TMBHMM: A frequency profile based HMM for predicting the topology of transmembrane beta barrel proteins and the exposure status of transmembrane residues

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1814, Issue 5, 2011, Pages 664-670

  Singh, Nitesh Kumar ^a   Goodman, Aaron ^b   Walter, Peter ^a   Helms, Volkhard ^a   Hayat, Sikander ^a  

^a SAARLAND UNIVERSITY   (Germany)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Hidden Markov model; Lipid exposure; Membrane protein topology; Structure prediction web server; Transmembrane beta barrel proteins

Indexed keywords

MEMBRANE PROTEIN; TRANSMEMBRANE BETA BARREL PROTEIN; UNCLASSIFIED DRUG;

ACCURACY; ANALYTIC METHOD; ARTICLE; HIDDEN MARKOV MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; TMBHMM METHOD; WEB BROWSER;

COMPUTATIONAL BIOLOGY; MEMBRANE PROTEINS; MODELS, THEORETICAL;

EID: 79955605443     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2011.03.004     Document Type: Article

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