Calculating Sedimentation Coefficient Distributions by Direct Modeling of Sedimentation Velocity Concentration Profiles

Methods in Enzymology

Volumn 384, Issue , 2004, Pages 185-212

  Dam, Julie ^a   Schuck, Peter ^b  

^a UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CALCULATION; CONFORMATIONAL TRANSITION; GRAVITY; HYDRODYNAMICS; MACROMOLECULE; MASS; MATHEMATICAL MODEL; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; SEDIMENTATION; SEDIMENTATION VELOCITY CONCENTRATION MODEL; ULTRACENTRIFUGATION; VELOCITY;

EID: 1842428822     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(04)84012-6     Document Type: Article

References (55)

1. J. Lebowitz, M. S. Lewis, and P. Schuck, Protein Sci. 11, 2067 (2002).
2. G. Rivas, W. Stafford, and A. P. Minton, Methods Companion Methods Enzymol. 19, 194 (1999).
3. T. M. Laue and W. F. I. Stafford, Annu. Rev. Biophys. Biomol. Struct. 28, 75 (1999).
4. T. Svedberg and K. O. Pedersen, "The Ultracentrifuge." Oxford University Press, London, 1940.
5. H. K. Schachman, "Ultracentrifugation in Biochemistry." Academic Press, New York, 1959.
6. B. Elzen, "Scientists and Rotors: The Development of Biochemical Ultracentrifuges." Dissertation, University Twente, Enschede, Netherlands, 1988.
7. O. Lamm, Ark. Mat. Astr. Fys. 21B(2), 1 (1929).
8. J. S. Philo, Biophys. J. 72, 435 (1997).
9. P. Schuck, C. E. MacPhee, and G. J. Howlett, Biophys. J. 74, 466 (1998).
10. P. Schuck and D. B. Millar, Anal. Biochem. 259, 48 (1998).
11. P. Schuck, Biophys. J. 75, 1503 (1998).
12. W. F. Stafford, Biophys. J. 74(2), A301 (1998).
13. B. Demeler, J. Behlke, and O. Ristau, Methods Enzymol. 321, 36 (2000).
14. J. Behlke and O. Ristau, Biophys. Chem. 95, 59 (2002).
15. P. Schuck, Biophys. Chem. in press (2004).
16. P. Schuck, Biophys. Chem. in press (2004).
17. P. Schuck, Anal. Biochem. 320, 104 (2003).
18. D. A. Yphantis, J. W. Lary, W. F. Stafford, S. Liu, P. H. Olsen, D. B. Hayes, T. P. Moody, T. M. Ridgeway, D. A. Lyons, and T. M. Laue, in "Modern Analytical Ultracentrifugation" (T. M. Schuster and T. M. Laue, eds.), p. 209. Birkhäuser, Boston, 1994.
19. P. Schuck, M. A. Perugini, N. R. Gonzales, G. J. Howlett, and D. Schubert, Biophys. J. 82, 1096 (2002).
20. P. Schuck, Biophys. J. 78, 1606 (2000).
21. http://www.analyticalultracentrifugation.com/references.htm.
22. W. F. Stafford, Methods Enzymol. 240, 478 (1994).
23. J. S. Philo, Anal. Biochem. 279, 151 (2000).
24. J.-M. Claverie, H. Dreux, and R. Cohen, Biopolymers 14, 1685 (1975).
25. J. Crank and P. Nicholson, Proc. Camb. Philos. Soc. 43, 50 (1947).
26. W. H. Press, S. A. Teukolsky, W. T. Vetterling, and B. P. Flarnery, "Numerical Recipes in C." Cambridge University Press, Cambridge, 1992.
27. H. Fujita, "Mathematical Theory of Sedimentation Analysis." Academic Press, New York, 1962.
28. P. Schuck and P. Rossmanith, Biopolymers 54, 328 (2000).
29. M. A. Perugini, P. Schuck, and G. J. Howlett, Eur. J. Biochem. 269, 5939 (2002).
30. J. Lebowitz, M. Teale, and P. Schuck, Biochem. Soc. Trans. 26, 745 (1998).
31. S. R. Kar, J. S. Kinsbury, M. S. Lewis, T. M. Laue, and P. Schuck, Anal. Biochem. 285, 135 (2000).
32. P. Schuck and B. Demeler, Biophys. J. 76, 2288 (1999).
33. W. F. Stafford, Methods Enzymol. 323, 302 (2000).
34. M. Straume and M. L. Johnson, Methods Enzymol. 210, 87 (1992).
35. C. L. Lawson and R. J. Hanson, "Solving Least Squares Problems." Prentice-Hall, Englewood Cliffs, NJ, 1974.
36. D. L. Phillips, Assoc. Comput. Mach. 9, 84 (1962).
37. S. W. Provencher, Comp. Phys. Commun. 27, 213 (1982).
38. P. C. Hansen, Inverse Probl. 8, 849 (1992).
39. S. W. Provencher, Makromol. Chem. 180, 201 (1979).
40. A. K. Livesey, P. Licinio, and M. Delaye, J. Chem. Phys. 84, 5102 (1986).
41. S. W. Provencher, Comp. Phys. Commun. 27, 229 (1982).
42. P. C. Hansen, in "Rank-Deficient and Discrete III-Posed Problems." SIAM, Philadelphia, PA, 1998.
43. P. Schuck, in preparation (2004).
44. C. R. Cantor and P. R. Schimmel, "Biophysical Chemistry. II. Techniques for the Study of Biological Structure and Function." W. H. Freeman & Co., New York, 1980.
45. P. Schuck, Z. Taraporewala, P. McPhie, and J. T. Patton, J. Biol. Chem. 276, 9679 (2000).
46. D. M. Hatters, L. Wilson, B. W. Atcliffe, T. D. Mulhern, N. Guzzo-Pernell, and G. J. Howlett, Biophys. J. 81, 371 (2001).
47. J. Benach, Y.-T. Chou, J. J. Fak, A. Itkin, D. D. Nicolae, P. C. Smith, G. Wittrock, D. L. Floyd, C. M. Golsaz, L. M. Gierasch, and J. F. Hunt, J. Biol. Chem. 278, 3628 (2003).
48. W. F. Stafford, Anal. Biochem. 203, 295 (1992).
49. K. E. van Holde and W. O. Weischet, Biopolymers 17, 1387 (1978).
50. B. Demeler, H. Saber, and J. C. Hansen, Biophys. J. 72, 397 (1997).
51. J. Dam. Nature Immunol. 4, 1213 (2003).
52. J. Garcia De La Torre, M. L. Huertas, and B. Carrasco, Biophys. J. 78, 719 (2000).
53. J. J. Correia, Methods Enzymol. 321, 81 (2000).
54. P. J. Steinbach, Biophys. J. 70, 1521 (1996).
55. J. Svitel, A. Balbo, R. A. Mariuzza, N. R. Gonzales, and P. Schuck, Biophys. J. 84, 4062 (2003).