-
1
-
-
0037338297
-
Data analysis - The Achilles heel of proteomics
-
DOI 10.1038/nbt0303-221
-
Patterson, S. D. Data analysis-the Achilles heel of proteomics. Nat. Biotechnol. 2003, 21 (3), 221-222. (Pubitemid 36314795)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.3
, pp. 221-222
-
-
Patterson, S.D.1
-
2
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon, B.; Aebersold, R. Mass spectrometry and protein analysis. Science. 2006, 312 (5771), 212-217.
-
(2006)
Science.
, vol.312
, Issue.5771
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
3
-
-
35848929694
-
Analysis and validation of proteomic data generated by tandem mass spectrometry
-
DOI 10.1038/nmeth1088, PII NMETH1088
-
Nesvizhskii, A. I.; Vitek, O.; Aebersold, R. Analysis and validation of proteomic data generated by tandem mass spectrometry. Nat. Methods. 2007, 4 (10), 787-797. (Pubitemid 350055575)
-
(2007)
Nature Methods
, vol.4
, Issue.10
, pp. 787-797
-
-
Nesvizhskii, A.I.1
Vitek, O.2
Aebersold, R.3
-
4
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
DOI 10.1021/pr049882h
-
Craig, R.; Cortens, J. P.; Beavis, R. C. Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004, 3 (6), 1234-1242. (Pubitemid 40040378)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.6
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
5
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
DOI 10.1021/ac0258709
-
Fenyo, D.; Beavis, R. C. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 2003, 75 (4), 768-774. (Pubitemid 36232428)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.4
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
6
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
DOI 10.1093/bioinformatics/bth092
-
Craig, R.; Beavis, R. C. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20 (9), 1466-1467. (Pubitemid 38931421)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
7
-
-
0141955057
-
A method for reducing the time required to match protein sequences with tandem mass spectra
-
Craig, R.; Beavis, R. C. A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom. 2003, 17 (20), 2310-2316. (Pubitemid 37243315)
-
(2003)
Rapid Communications in Mass Spectrometry
, vol.17
, Issue.20
, pp. 2310-2316
-
-
Craig, R.1
Beavis, R.C.2
-
8
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger, K.; Mäder, A. W.; Richmond, R. K.; Sargent, D. F.; Richmond, T. J. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 1997, 389 (6648), 251-260. (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
9
-
-
84856043226
-
-
http://thegpm.org/docs/peptide-protein-expect.pdf.
-
-
-
-
10
-
-
77249162697
-
Streamlined analysis schema for highthroughput identification of endogenous protein complexes
-
Malovannaya, A.; Li, Y.; Bulynko, Y.; Jung, S. Y.; Wang, Y.; Lanz, R. B.; O'Malley, B. W.; Qin, J. Streamlined analysis schema for highthroughput identification of endogenous protein complexes. Proc. Natl. Acad. Sci. U.S.A. 2010, 107 (6), 2431-2436.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, Issue.6
, pp. 2431-2436
-
-
Malovannaya, A.1
Li, Y.2
Bulynko, Y.3
Jung, S.Y.4
Wang, Y.5
Lanz, R.B.6
O'Malley, B.W.7
Qin, J.8
-
11
-
-
0032867676
-
The 26S proteasome: A molecular machine designed for controlled proteolysis
-
DOI 10.1146/annurev.biochem.68.1.1015
-
Voges, D.; Zwickl, P.; Baumeister, W. The 26S proteasome: a molecular machine designed for controlled proteolysis. Annu. Rev. Biochem. 1999, 68, 1015-1068. (Pubitemid 29449214)
-
(1999)
Annual Review of Biochemistry
, vol.68
, pp. 1015-1068
-
-
Voges, D.1
Zwickl, P.2
Baumeister, W.3
-
12
-
-
58149193234
-
STRING 8 - A global view on proteins and their functional interactions in 630 organisms
-
Jensen, L. J.; Kuhn, M.; Stark, M.; Chaffron, S.; Creevey, C.; Muller, J.; Doerks, T.; Julien, P.; Roth, A.; Simonovic, M.; Bork, P.; von Mering, C. STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009, 37 (Database issue), D412-416.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.DATABASE ISSUE
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
Bork, P.11
Von Mering, C.12
-
13
-
-
31044441154
-
3
-
DOI 10.1172/JCI26989
-
Bennett, J. S. Structure and function of the platelet integrin alphaIIbbeta3. J. Clin. Invest. 2005, 115 (12), 3363-3369. (Pubitemid 43121820)
-
(2005)
Journal of Clinical Investigation
, vol.115
, Issue.12
, pp. 3363-3369
-
-
Bennett, J.S.1
-
14
-
-
0141865705
-
Talin binding to integrin β tails: A final common step in integrin activation
-
DOI 10.1126/science.1086652
-
Tadokoro, S.; Shattil, S. J.; Eto, K.; Tai, V.; Liddington, R. C.; de Pereda, J. M.; Ginsberg, M. H.; Calderwood, D. A. Talin binding to integrin beta tails: a final common step in integrin activation. Science 2003, 302 (5642), 103-106. (Pubitemid 37210697)
-
(2003)
Science
, vol.302
, Issue.5642
, pp. 103-106
-
-
Tadokoro, S.1
Shattil, S.J.2
Eto, K.3
Tai, V.4
Liddington, R.C.5
De Pereda, J.M.6
Ginsberg, M.H.7
Calderwood, D.A.8
-
15
-
-
37549029679
-
Loss of talin1 in platelets abrogates integrin activation, platelet aggregation, and thrombus formation in vitro and in vivo
-
Nieswandt, B.; Moser, M.; Pleines, I.; Varga-Szabo, D.; Monkley, S.; Critchley, D.; Fassler, R. Loss of talin1 in platelets abrogates integrin activation, platelet aggregation, and thrombus formation in vitro and in vivo. J. Exp. Med. 2007, 204 (13), 3113-3118.
-
(2007)
J. Exp. Med.
, vol.204
, Issue.13
, pp. 3113-3118
-
-
Nieswandt, B.1
Moser, M.2
Pleines, I.3
Varga-Szabo, D.4
Monkley, S.5
Critchley, D.6
Fassler, R.7
-
16
-
-
37549064277
-
Talin is required for integrin-mediated platelet function in hemostasis and thrombosis
-
Petrich, B. G.; Marchese, P.; Ruggeri, Z. M.; Spiess, S.; Weichert, R. A.; Ye, F.; Tiedt, R.; Skoda, R. C.; Monkley, S. J.; Critchley, D. R.; Ginsberg, M. H. Talin is required for integrin-mediated platelet function in hemostasis and thrombosis. J. Exp. Med. 2007, 204 (13), 3103-3011.
-
(2007)
J. Exp. Med.
, vol.204
, Issue.13
, pp. 3103-3011
-
-
Petrich, B.G.1
Marchese, P.2
Ruggeri, Z.M.3
Spiess, S.4
Weichert, R.A.5
Ye, F.6
Tiedt, R.7
Skoda, R.C.8
Monkley, S.J.9
Critchley, D.R.10
Ginsberg, M.H.11
-
17
-
-
40449133970
-
Kindlin-3 is essential for integrin activation and platelet aggregation
-
DOI 10.1038/nm1722, PII NM1722
-
Moser, M.; Nieswandt, B.; Ussar, S.; Pozgajova, M.; Fässler, R. Kindlin-3 is essential for integrin activation and platelet aggregation. Nat. Med. 2008, 14 (3), 325-330. (Pubitemid 351347914)
-
(2008)
Nature Medicine
, vol.14
, Issue.3
, pp. 325-330
-
-
Moser, M.1
Nieswandt, B.2
Ussar, S.3
Pozgajova, M.4
Fassler, R.5
-
18
-
-
66149128873
-
The tail of integrins, talin, and kindlins
-
Moser, M.; Legate, K. R.; Zent, R.; Fässler, R. The tail of integrins, talin, and kindlins. Science. 2009, 324 (5929), 895-899.
-
(2009)
Science.
, vol.324
, Issue.5929
, pp. 895-899
-
-
Moser, M.1
Legate, K.R.2
Zent, R.3
Fässler, R.4
-
19
-
-
14644400415
-
Rap1b is required for normal platelet function and hemostasis in mice
-
DOI 10.1172/JCI200522973
-
Chrzanowska-Wodnicka, M.; Smyth, S. S.; Schoenwaelder, S. M.; Fischer, T. H.; G, C. W. Rap1b is required for normal platelet function and hemostasis in mice. J. Clin. Invest. 2005,115 (3), 680-687. (Pubitemid 40322242)
-
(2005)
Journal of Clinical Investigation
, vol.115
, Issue.3
, pp. 680-687
-
-
Chrzanowska-Wodnicka, M.1
Smyth, S.S.2
Schoenwaelder, S.M.3
Fischer, T.H.4
White II, G.C.5
-
20
-
-
33748454742
-
Reconstructing and Deconstructing Agonist-Induced Activation of Integrin αIIbβ3
-
DOI 10.1016/j.cub.2006.08.035, PII S0960982206020471
-
Han, J.; Lim, C. J.; Watanabe, N.; Soriani, A.; Ratnikov, B.; Calderwood, D. A.; Puzon-McLaughlin, W.; Lafuente, E. M.; Boussiotis, V. A.; Shattil, S. J.; Ginsberg, M. H. Reconstructing and deconstructing agonist-induced activation of integrin alphaIIbbeta3. Curr. Biol. 2006, 16 (18), 1796-1806. (Pubitemid 44354146)
-
(2006)
Current Biology
, vol.16
, Issue.18
, pp. 1796-1806
-
-
Han, J.1
Lim, C.J.2
Watanabe, N.3
Soriani, A.4
Ratnikov, B.5
Calderwood, D.A.6
Puzon-McLaughlin, W.7
Lafuente, E.M.8
Boussiotis, V.A.9
Shattil, S.J.10
Ginsberg, MarkH.11
-
21
-
-
77955394572
-
Optimization of formaldehyde crosslinking for protein interaction analysis of non-tagged integrin β1
-
Klockenbusch, C.; Kast, J. Optimization of formaldehyde crosslinking for protein interaction analysis of non-tagged integrin β1. J. Biomed. Biotechnol. 2010, 2010, 927585.
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 927585
-
-
Klockenbusch, C.1
Kast, J.2
-
22
-
-
38549173606
-
The BioGRID interaction database: 2008 update
-
Breitkreutz, B. J.; Stark, C.; Reguly, T.; Boucher, L.; Breitkreutz, A.; Livstone, M.; Oughtred, R.; Lackner, D. H.; Bahler, J.; Wood, V.; Dolinski, K.; Tyers, M. The BioGRID interaction database: 2008 update. Nucleic Acids Res. 2007, 36 (Database issue), D637-640.
-
(2007)
Nucleic Acids Res.
, vol.36
, Issue.DATABASE ISSUE
-
-
Breitkreutz, B.J.1
Stark, C.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Livstone, M.6
Oughtred, R.7
Lackner, D.H.8
Bahler, J.9
Wood, V.10
Dolinski, K.11
Tyers, M.12
-
23
-
-
33644877439
-
Human protein reference database - 2006 update
-
Mishra, G. R.; Suresh, M.; Kumaran, K.; Kannabiran, N.; Suresh, S.; Bala, P.; Shivakumar, K.; Anuradha, N.; Reddy, R.; Raghavan, T. M.; Menon, S.; Hanumanthu, G.; Gupta, M.; Upendran, S.; Gupta, S.; Mahesh, M.; Jacob, B.; Mathew, P.; Chatterjee, P.; Arun, K. S.; Sharma, S.; Chandrika, K. N.; Deshpande, N.; Palvankar, K.; Raghavnath, R.; Krishnakanth, R.; Karathia, H.; Rekha, B.; Nayak, R.; Vishnupriya, G.; Kumar, H. G.; Nagini, M.; Kumar, G. S.; Jose, R.; Deepthi, P.; Mohan, S. S.; Gandhi, T. K.; Harsha, H. C.; Deshpande, K. S.; Sarker, M.; Prasad, T. S.; Pandey, A. Human protein reference database - 2006 update. Nucleic Acids Res. 2006, 34 (Database issue), D411-414.
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.DATABASE ISSUE
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
Menon, S.11
Hanumanthu, G.12
Gupta, M.13
Upendran, S.14
Gupta, S.15
Mahesh, M.16
Jacob, B.17
Mathew, P.18
Chatterjee, P.19
Arun, K.S.20
Sharma, S.21
Chandrika, K.N.22
Deshpande, N.23
Palvankar, K.24
Raghavnath, R.25
Krishnakanth, R.26
Karathia, H.27
Rekha, B.28
Nayak, R.29
Vishnupriya, G.30
Kumar, H.G.31
Nagini, M.32
Kumar, G.S.33
Jose, R.34
Deepthi, P.35
Mohan, S.S.36
Gandhi, T.K.37
Harsha, H.C.38
Deshpande, K.S.39
Sarker, M.40
Prasad, T.S.41
Pandey, A.42
more..
-
24
-
-
33846047770
-
IntAct - Open source resource for molecular interaction data
-
Kerrien, S.; Alam-Faruque, Y.; Aranda, B.; Bancarz, I.; Bridge, A.; Derow, C.; Dimmer, E.; Feuermann, M.; Friedrichsen, A.; Huntley, R.; Kohler, C.; Khadake, J.; Leroy, C.; Liban, A.; Lieftink, C.; Montecchi-Palazzi, L.; Orchard, S.; Risse, J.; Robbe, K.; Roechert, B.; Thorneycroft, D.; Zhang, Y.; Apweiler, R.; Hermjakob, H. IntAct - open source resource for molecular interaction data. Nucleic Acids Res. 2006, 35 (Database issue), 561-565.
-
(2006)
Nucleic Acids Res.
, vol.35
, Issue.DATABASE ISSUE
, pp. 561-565
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
Kohler, C.11
Khadake, J.12
Leroy, C.13
Liban, A.14
Lieftink, C.15
Montecchi-Palazzi, L.16
Orchard, S.17
Risse, J.18
Robbe, K.19
Roechert, B.20
Thorneycroft, D.21
Zhang, Y.22
Apweiler, R.23
Hermjakob, H.24
more..
-
25
-
-
33846073818
-
MINT the Molecular INTeraction database
-
Chatr-aryamontri, A.; Ceol, A.; Palazzi, L. M.; Nardelli, G.; Schneider, M. V.; Castagnoli, L.; Cesareni, G. MINT the Molecular INTeraction database. Nucleic Acids Res. 2007, 35 (Database issue), D572-574.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.DATABASE ISSUE
-
-
Chatr-Aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
Castagnoli, L.6
Cesareni, G.7
-
26
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
DOI 10.1093/nar/gkm882
-
Kanehisa, M.; Araki, M.; Goto, S.; Hattori, M.; Hirakawa, M.; Itoh, M.; Katayama, T.; Kawashima, S.; Okuda, S.; Tokimatsu, T.; Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008, 36 (Database issue), D480-484. (Pubitemid 351149770)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
27
-
-
61449213806
-
Mechanisms that regulate adaptor binding to beta-integrin cytoplasmic tails
-
Legate, K. R.; Fassler, R. Mechanisms that regulate adaptor binding to beta-integrin cytoplasmic tails. J. Cell Sci. 2009, 122 (Pt 2), 187-198.
-
(2009)
J. Cell Sci.
, vol.122
, Issue.PART 2
, pp. 187-198
-
-
Legate, K.R.1
Fassler, R.2
-
28
-
-
0037145037
-
Integrins: Bidirectional, allosteric signaling machines
-
DOI 10.1016/S0092-8674(02)00971-6
-
Hynes, R. O. Integrins: bidirectional, allosteric signaling machines. Cell 2002, 110 (6), 673-687. (Pubitemid 35283958)
-
(2002)
Cell
, vol.110
, Issue.6
, pp. 673-687
-
-
Hynes, R.O.1
-
29
-
-
0033529596
-
The proteasome, a novel protease regulated by multiple mechanisms
-
DeMartino, G. N.; Slaughter, C. A. The proteasome, a novel protease regulated by multiple mechanisms. J. Biol. Chem. 1999, 274 (32), 22123-22126.
-
(1999)
J. Biol. Chem.
, vol.274
, Issue.32
, pp. 22123-22126
-
-
Demartino, G.N.1
Slaughter, C.A.2
-
30
-
-
12844270522
-
Regulation of outside-in signaling in platelets by integrin-associated protein kinase Cβ
-
DOI 10.1074/jbc.M410229200
-
Buensuceso, C. S.; Obergfell, A.; Soriani, A.; Eto, K.; Kiosses, W. B.; Arias-Salgado, E. G.; Kawakami, T.; Shattil, S. J. Regulation of outside-in signaling in platelets by integrin-associated protein kinase C beta. J. Biol. Chem. 2005, 280 (1), 644-653. (Pubitemid 40165031)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.1
, pp. 644-653
-
-
Buensuceso, C.S.1
Obergfell, A.2
Soriani, A.3
Eto, K.4
Kiosses, W.B.5
Arias-Salgado, E.G.6
Kawakami, T.7
Shattil, S.J.8
-
31
-
-
0037092048
-
Coordinate interactions of Csk, Src, and Syk kinases with αIIbβ3 initiate integrin signaling to the cytoskeleton
-
DOI 10.1083/jcb.200112113
-
Obergfell, A.; Eto, K.; Mocsai, A.; Buensuceso, C.; Moores, S. L.; Brugge, J. S.; Lowell, C. A.; Shattil, S. J. Coordinate interactions of Csk, Src, and Syk kinases with [alpha]IIb[beta]3 initiate integrin signaling to the cytoskeleton. J. Cell Biol. 2002, 157 (2), 265-275. (Pubitemid 34839823)
-
(2002)
Journal of Cell Biology
, vol.157
, Issue.2
, pp. 265-275
-
-
Obergfell, A.1
Eto, K.2
Mocsai, A.3
Buensuceso, C.4
Moores, S.L.5
Brugge, J.S.6
Lowell, C.A.7
Shattil, S.J.8
-
32
-
-
0036660207
-
Thrombin functions during tissue factor-induced blood coagulation
-
DOI 10.1182/blood.V100.1.148
-
Brummel, K. E.; Paradis, S. G.; Butenas, S.; Mann, K. G. Thrombin functions during tissue factor-induced blood coagulation. Blood. 2002, 100 (1), 148-152. (Pubitemid 35177440)
-
(2002)
Blood
, vol.100
, Issue.1
, pp. 148-152
-
-
Brummel, K.E.1
Paradis, S.G.2
Butenas, S.3
Mann, K.G.4
-
33
-
-
8744300054
-
Cytoskeletal proteins talin and vinculin in integrin-mediated adhesion
-
DOI 10.1042/BST0320831
-
Critchley, D. R. Cytoskeletal proteins talin and vinculin in integrinmediated adhesion. Biochem. Soc. Trans. 2004, 32 (Pt 5), 831-836. (Pubitemid 39524391)
-
(2004)
Biochemical Society Transactions
, vol.32
, Issue.5
, pp. 831-836
-
-
Critchley, D.R.1
-
34
-
-
0026492891
-
Phosphorylation of vinculin in human platelets spreading on a solid surface
-
Hagmann, J.; Burger, M. M. Phosphorylation of vinculin in human platelets spreading on a solid surface. J. Cell Biochem. 1992, 50 (3), 237-244.
-
(1992)
J. Cell Biochem.
, vol.50
, Issue.3
, pp. 237-244
-
-
Hagmann, J.1
Burger, M.M.2
-
35
-
-
0030026679
-
1-integrin-linked protein kinase
-
DOI 10.1038/379091a0
-
Hannigan, G. E.; Leung-Hagesteijn, C.; Fitz-Gibbon, L.; Coppolino, M. G.; Radeva, G.; Filmus, J.; Bell, J. C.; Dedhar, S. Regulation of cell adhesion and anchorage-dependent growth by a new 1-integrin-linked protein kinase. Nature 1996, 379 (6560), 91-96. (Pubitemid 26008142)
-
(1996)
Nature
, vol.379
, Issue.6560
, pp. 91-96
-
-
Hannigan, G.E.1
Leung-Hagesteijn, C.2
Fitz-Gibbon, L.3
Coppolino, M.G.4
Radeva, G.5
Filmus, J.6
Bell, J.C.7
Dedhar, S.8
-
36
-
-
0032879692
-
Melusin is a new muscle-specific interactor for betal integrin cytoplasmic domain
-
Brancaccio, M.; Guazzone, S.; Menini, N.; Sibona, E.; Hirsch, E.; De Andrea, M.; Rocchi, M.; Altruda, F.; Tarone, G.; Silengo, L. Melusin is a new muscle-specific interactor for betal integrin cytoplasmic domain. J. Biol. Chem. 1999, 274 (41), 29282-29288.
-
(1999)
J. Biol. Chem.
, vol.274
, Issue.41
, pp. 29282-29288
-
-
Brancaccio, M.1
Guazzone, S.2
Menini, N.3
Sibona, E.4
Hirsch, E.5
De Andrea, M.6
Rocchi, M.7
Altruda, F.8
Tarone, G.9
Silengo, L.10
|