New insights into neuroblastoma cisplatin resistance: A comparative proteomic and meta-mining investigation

Journal of Proteome Research

Volumn 10, Issue 2, 2011, Pages 416-428

  D'Aguanno, Simona ^a,b   D'Alessandro, Annamaria ^a,b   Pieroni, Luisa ^a,b   Roveri, Antonella ^c   Zaccarin, Mattia ^c   Marzano, Valeria ^a,b   De Canio, Michele ^a   Bernardini, Sergio ^a   Federici, Giorgio ^a,b   Urbani, Andrea ^a,b  

^a UNIVERSITY OF ROME TOR VERGATA   (Italy)

^b IRCCS FONDAZIONE SANTA LUCIA   (Italy)

^c UNIVERSITY OF PADOVA   (Italy)

Author keywords

2 DE; Chemoresistance; Cisplatin; Label free LC MS; Neuroblastoma; Nrf2

Indexed keywords

CISPLATIN; CYTOCHROME C; CYTOKERATIN 14; CYTOKERATIN 17; DEAD BOX PROTEIN; ELONGATION FACTOR 2; ELONGATION FACTOR TU; EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 DELTA ISOFORM 2; EZRIN; GLUTATHIONE TRANSFERASE M3; GLUTATHIONE TRANSFERASE P1; GUANINE NUCLEOTIDE BINDING PROTEIN SUBUNIT BETA 2 LIKE 1; HEAT SHOCK PROTEIN 90; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G; INITIATION FACTOR 4A; LIPOCORTIN 2; MYOSIN HEAVY CHAIN 9; PEROXIREDOXIN 4; PEROXISOMAL ENOYL COENZYME A HYDRATASE LIKE PROTEIN; PHOSPHOGLYCERATE KINASE 1; POLYADENYLATE BINDING PROTEIN 1; PROTEASOME ALPHA1 SUBUNIT ISOFORM2; RAN PROTEIN; TRANSCRIPTION FACTOR NRF2; TRANSKETOLASE; TRIOSEPHOSPHATE ISOMERASE 1; UBIQUITIN CARBOXYL TERMINAL ESTERASE L1; UNCLASSIFIED DRUG; UNINDEXED DRUG; VOLTAGE DEPENDENT ANION CHANNEL 2;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CELL FUNCTION; CELL PROTECTION; CELL SURVIVAL; CONFOCAL MICROSCOPY; DATA MINING; DRUG SENSITIVITY; DRUG TARGETING; ENZYME ASSAY; GEL ELECTROPHORESIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NEUROBLASTOMA; NEUROBLASTOMA CELL; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS;

ANTINEOPLASTIC AGENTS; CELL LINE, TUMOR; CELL SURVIVAL; CHROMATOGRAPHY, LIQUID; CISPLATIN; COMPUTER SIMULATION; DATA MINING; DATABASES, PROTEIN; DRUG RESISTANCE, NEOPLASM; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; MASS SPECTROMETRY; NEOPLASM PROTEINS; NEUROBLASTOMA; NF-E2-RELATED FACTOR 2; PROTEOME; PROTEOMICS; SIGNAL TRANSDUCTION;

EID: 79955415038     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100457n     Document Type: Article

References (65)

1. Brodeur, G. M. Nat. Rev. Cancer 2003, 3, 203-216.
2. Maris, J. M.; Hogarty, M. D.; Bagatell, R.; Cohn, S. L. Lancet 2007, 369, 2106-2120.
3. Matthay, K. K.; Villablanca, J. G.; Seeger, R. C.; Stram, D. O.; et al. N. Engl. J. Med. 1999, 341, 1165-1173.
4. Dorr, R. T.; Von Hoff, D. D. Cancer Chemotherapy Handbook, Appleton & Lange: Norwalk, 1994; pp 286-298.
5. Wang, D.; Lippard, S. J. Nat. Rev. Drug Discovery 2005, 4, 307-320.
6. Brozovic, A.; Osmak, M. Cancer Lett. 2007, 251, 1-16.
7. Borst, P.; Rottenberg, S.; Jonkers, J. Cell Cycle 2008, 7, 1353-1359.
8. Zhang, J. T.; Liu, Y. Cancer Treatment Rev. 2007, 33, 741-756.
9. D'Alessandro, A.; Marzano, V.; D'Aguanno, S. Progress in Cancer Drug Resistance Research; Robert, A. Ed.; Nova Publishers: Parsone, 2007; pp 161-176.
10. Urbani, A.; Poland, J.; Bernardini, S.; Bellincampi, L.; Biroccio, A.; Schnölzer, M.; Sinha, P.; Federici, G. Proteomics 2005, 3, 796-804.
11. Copple, I. M.; Goldring, C. E.; Kitteringham, N. R.; Park, B. K. Toxicology 2008, 246, 24-33.
12. Itoh, K.; Wakabayashi, N.; Katoh, Y.; Ishii, T.; et al. Genes Dev. 1999, 13, 76-86.
13. Cullinan, S. B.; Gordan, J. D.; Jin, J.; Harper, J. W.; et al. Mol. Cell. Biol. 2004, 24, 8477-8486.
14. Katsuoka, F.; Motohashi, H.; Ishii, T.; Aburatani, H.; Engel, J. D.; Yamamoto, M. Mol. Cell. Biol. 2005, 25, 8044-8051.
15. Inamdar, N. M.; Ahn, Y. I.; Alam, J. Biochem. Biophys. Res. Commun. 1996, 221, 570-576.
16. Kobayashi, M.; Itoh, K.; Suzuki, T.; Osanai, H.; et al. Genes Cells 2002, 7, 807-820.
17. Moinova, H. R.; Mulcahy, R. T. J. Biol. Chem. 1998, 273, 14683-14689.
18. Cheung, C. K.; Mak, Y. T.; Swaminathan, R. Ann. Clin. Biochem. 1987, 24, 140-144.
19. Mortz, E.; Krogh, T. N.; Vorum, H.; Gorg, A. Proteomics 2001, 1, 1359-1363.
20. De Canio, M.; D'Aguanno, S.; Sacchetti, C.; Petrucci, F.; Cavagni, G.; Nuccetelli, M.; Federici, G.; Urbani, A.; Bernardini, S. J Proteome Res. 2009, 9, 4383-91.
21. Vissers, J. P.; Langridge, J. I.; Aerts, J. M. Mol. Cell. Proteomics. 2007, 6, 755-766.
22. Fiorentino, L.; Vivanti, A.; Cavalera, M.; Marzano, V.; Ronci, M.; Fabrizi, M.; Menini, S.; Pugliese, G.; Menghini, R.; Khokha, R.; Lauro, R.; Urbani, A.; Federici, M. Hepatology 2010, 1, 103-10.
23. Caraux, G.; Pinloche, S. Bioinformatics 2005, 21, 1280-1281.
24. Roveri, A.; Maiorino, M.; Ursini, F. Methods Enzymol. 1994, 233, 202-212.
25. Puga, A.; Ma, C.; Marlowe, J. L. Biochem. Pharmacol. 2009, 77, 713-722.
26. Lazarides, E.; Burridge, K. Cell 1975, 6, 289-298.
27. Langanger, G.; Moeremans, M.; Daneels, G.; Sobieszek, A.; et al. J. Cell Biol. 1986, 102, 200-209.
28. Titulaer, M. K.; Mustafa, D. A.; Siccama, I.; Konijnenburg, M.; et al. BMC Bioinform. 2008, 9, 133.
29. Verrills, N. M.; Walsh, B. J.; Cobon, G. S.; Hains, P. G.; Kavallaris, M. L Biol. Chem. 2003, 278, 45082-45093.
30. Chang, T. W.; Chen, C. C; Chen, K. Y.; Su, J. H.; et al. Oncogene 2008, 27, 332-338.
31. Stravopodis, D. J.; Margaritis, L. H.; Voutsinas, G. E. Curr. Med. Chem. 2007, 14, 3122-3138.
32. Whitesell, L.; Lindquist, S. L. Nat. Rev. Cancer 2005, 5, 761-772.
33. Workman, P. Cancer Lett. 2004, 206, 149-157.
34. Niemantsverdriet, M.; Wagner, K.; Visser, M.; Backendorf, C. Oncogene 2008, 27, 1315-1319.
35. Neal, C. L.; Yao, J.; Yang, W.; Zhou, X.; et al. Cancer Res. 2009, 69, 3425-3432.
36. Han, B.; Xie, H.; Chen, Q.; Zhang, J. T. Mol. Cancer Ther. 2006, 5, 903-912.
37. Chan, T. A.; Hermeking, H.; Lengauer, C.; Kinzler, K. W.; et al. Nature 1999, 401, 616-620.
38. Laronga, C.; Yang, H. Y.; Neal, C.; Lee, M. H. J. Biol. Chem. 2000, 275, 23106-23112.
39. Fan, T.; Li, R.; Todd, N. W.; et al. Cancer Res. 2007, 67, 7901-7906.
40. Bajpai, U.; Sharma, R.; Kausar, T.; Dattagupta, S.; et al. Int. J. Biol. Markers. 2008, 23, 231-237.
41. Sawhney, M.; Matta, A.; Macha, M.A.,; Kaur, J.; et al. Int. J. Cancer 2009, 124, 2098-2105.
42. Yan, X. D.; Pan, L. Y.; Yuan, Y.; Lang, J. H.; Mao, N. J. Proteome Res. 2007, 2, 772-780.
43. Jaiswal, A. K. Free Radic. Biol. Med. 2004, 36, 1199-1207.
44. Sun, Z.; Zhang, S.; Chan, J. Y.; Zhang, D. D. Mol. Cell. Biol. 2007, 27, 6334-6349.
45. Zhang, D. D.; Hannink, M. Mol. Cell. Biol. 2003, 22, 8137-8151.
46. Zhang, D. D.; Lo, S. C.; Cross, J. V.; Templeton, D. J.; et al. Mol. Cell. Biol. 2004, 24, 10941-10953.
47. Bloom, D. A.; Jaiswal, A. K. J. Biol. Chem. 2003, 278, 44675-44682.
48. Papaiahgari, S.; Zhang, Q.; Kleeberger, S. R.; Cho, H. Y.; et al. Antioxid. Redox Signal. 2006, 8, 43-52.
49. Cullinan, S. B.; Zhang, D.; Hannink, M.; Arvisais, E.; et al. Mol. Cell. Biol. 2003, 20, 7198-7209.
50. Jain, A. K.; Jaiswal, A. K. J. Biol. Chem. 2007, 282, 16502-16510.
51. Kannan, S.; Jaiswal, A. K. Cancer Res. 2006, 66, 8421-8429.
52. Salazar, M.; Rojo, A. I.; Velasco, D.; De Sagarra, R. M.; et al. J. Biol. Chem. 2006, 281, 14841-14851.
53. Usami, H.; Kusano, Y.; Kumagai, T.; Osada, S.; et al. J. Biol. Chem. 2005, 280, 25267-25276.
54. Braun, S.; Hanselmann, C.; Gassmann, M. G.; auf dem Keller, U.; et al. Mol. Cell. Biol. 2002, 22, 5492-5505.
55. Chen, P. C.; Vargas, M. R.; Pani, A. K.; Smeyne, R. J.; et al. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 2933-2938.
56. Vargas, M. R.; Johnson, D. A.; Sirkis, D. W.; Messing, A.; et al. J. Neurosci. 2008, 28, 13574-13581.
57. Suh, J. H.; Shenvi, S. V.; Dixon, B. M.; Liu, H.; et al. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 3381-3386.
58. Lau, A.; Villeneuve, N. F.; Sun, Z.; Wong, P. K.; Zhang, D. D. Pharmacol. Res. 2008, 58, 262-270.
59. Singh, A.; Misra, V.; Thimmulappa, R. K.; Lee, H.; et al. PLoS Med. 2006, 3, e420.
60. Padmanabhan, B.; Tong, K. I.; Ohta, T.; Nakamura, Y.; et al. Mol. Cell 2006, 21, 689-700.
61. Stacy, D. R.; Ely, K.; Massion, P. P.; Yarbrough, W. G.; Hallahan, D. E.; et al. Head Neck 2006, 28, 813-818.
62. Wang, X. J.; Sun, Z.; Villeneuve, N. F.; Zhang, S.; et al. Carcinogenesis 2008, 29, 1235-1243.
63. Tan, K. P.; Kosuge, K.; Yang, M.; Ito, S. Free Radic Biol Med. 2008, 45, 1663-1673.
64. Singh, A.; Boldin-Adamsky, S.; Thimmulappa, R. K.; Rath, S. K.; et al. Cancer Res. 2008, 68, 7975-7984.
65. Cho, J. M.; Manandhar, S.; Lee, H. R.; Park, H. M.; et al. Cancer Lett. 2008, 260, 96-108.