메뉴 건너뛰기




Volumn 61, Issue 4, 2011, Pages 795-803

Olsenella umbonata sp. nov., a microaerotolerant anaerobic lactic acid bacterium from the sheep rumen and pig jejunum, and emended descriptions of Olsenella, Olsenella uli and Olsenella profusa

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 79955399988     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.022954-0     Document Type: Article
Times cited : (109)

References (56)
  • 1
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman, M. & Wagner, M. (2008). Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol 6, 431-440.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 2
    • 85054258666 scopus 로고    scopus 로고
    • Lactic acid bacteria: Classification and physiology
    • 3rd edn, Edited by S. Salminen, A. von Wright & A. Ouwehand. New York: Marcel Dekker
    • Axelsson, L. (2004). Lactic acid bacteria: classification and physiology. In Lactic Acid Bacteria: Microbiological and Functional Aspects, 3rd edn, pp. 1-66. Edited by S. Salminen, A. von Wright & A. Ouwehand. New York: Marcel Dekker.
    • (2004) Lactic Acid Bacteria: Microbiological and Functional Aspects , pp. 1-66
    • Axelsson, L.1
  • 4
    • 33748490305 scopus 로고    scopus 로고
    • Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents
    • Bowman, K. S., Moe, W. M., Rash, B. A., Bae, H. S. & Rainey, F. A. (2006). Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents. FEMS Microbiol Ecol 58, 120-133.
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 120-133
    • Bowman, K.S.1    Moe, W.M.2    Rash, B.A.3    Bae, H.S.4    Rainey, F.A.5
  • 5
    • 36148942886 scopus 로고    scopus 로고
    • Aerotolerance of strictly anaerobic microorganisms and factors of defense against oxidative stress: A review
    • Brioukhanov, A. L. & Netrusov, A. I. (2007). Aerotolerance of strictly anaerobic microorganisms and factors of defense against oxidative stress: a review. Appl Biochem Microbiol 43, 567-582.
    • (2007) Appl Biochem Microbiol , vol.43 , pp. 567-582
    • Brioukhanov, A.L.1    Netrusov, A.I.2
  • 6
    • 46249113590 scopus 로고    scopus 로고
    • The microbiome of the cloacal openings of the urogenital and anal tracts of the tammar wallaby, Macropus eugenii
    • Chhour, K. L., Hinds, L. A., Deane, E. M. & Jacques, N. A. (2008). The microbiome of the cloacal openings of the urogenital and anal tracts of the tammar wallaby, Macropus eugenii. Microbiology 154, 1535-1543.
    • (2008) Microbiology , vol.154 , pp. 1535-1543
    • Chhour, K.L.1    Hinds, L.A.2    Deane, E.M.3    Jacques, N.A.4
  • 9
    • 33947112073 scopus 로고    scopus 로고
    • Rumen ciliate protozoa contain high concentrations of conjugated linoleic acids and vaccenic acid, yet do not hydrogenate linoleic acid or desaturate stearic acid
    • Devillard, E., McIntosh, F. M., Newbold, C. J. & Wallace, R. J. (2006). Rumen ciliate protozoa contain high concentrations of conjugated linoleic acids and vaccenic acid, yet do not hydrogenate linoleic acid or desaturate stearic acid. Br J Nutr 96, 697-704.
    • (2006) Br J Nutr , vol.96 , pp. 697-704
    • Devillard, E.1    McIntosh, F.M.2    Newbold, C.J.3    Wallace, R.J.4
  • 10
    • 0034802146 scopus 로고    scopus 로고
    • Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: Description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov
    • Dewhirst, F. E., Paster, B. J., Tzellas, N., Coleman, B., Downes, J., Spratt, D. A. & Wade, W. G. (2001). Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov. Int J Syst Evol Microbiol 51, 1797-1804.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1797-1804
    • Dewhirst, F.E.1    Paster, B.J.2    Tzellas, N.3    Coleman, B.4    Downes, J.5    Spratt, D.A.6    Wade, W.G.7
  • 11
    • 49949095159 scopus 로고    scopus 로고
    • Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: Bacterial diversity in the ileum of newly weaned Salmonella-infected pigs
    • Dowd, S. E., Sun, Y., Wolcott, R. D., Domingo, A. & Carroll, J. A. (2008). Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonella-infected pigs. Foodborne Pathog Dis 5, 459-472.
    • (2008) Foodborne Pathog Dis , vol.5 , pp. 459-472
    • Dowd, S.E.1    Sun, Y.2    Wolcott, R.D.3    Domingo, A.4    Carroll, J.A.5
  • 12
    • 0036793702 scopus 로고    scopus 로고
    • Ammonia production by ruminal microorganisms and enumeration, isolation, and characterization of bacteria capable of growth on peptides and amino acids from the sheep rumen
    • Eschenlauer, S. C. P., McKain, N., Walker, N. D., McEwan, N. R., Newbold, C. J. & Wallace, R. J. (2002). Ammonia production by ruminal microorganisms and enumeration, isolation, and characterization of bacteria capable of growth on peptides and amino acids from the sheep rumen. Appl Environ Microbiol 68, 4925-4931.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4925-4931
    • Eschenlauer, S.C.P.1    McKain, N.2    Walker, N.D.3    McEwan, N.R.4    Newbold, C.J.5    Wallace, R.J.6
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0003437299 scopus 로고    scopus 로고
    • Version 3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2010). PHYLIP (Phylogeny Inference Package), version 3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2010) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 15
    • 84959747425 scopus 로고
    • Toward defining course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. (1971). Toward defining course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 16
    • 44249101121 scopus 로고    scopus 로고
    • The characterization of lactic acid producing bacteria from the rumen of dairy cattle grazing on improved pasture supplemented with wheat and barley grain
    • Hernandez, J. D., Scott, P. T., Shephard, R. W. & Al Jassim, R. A. M. (2008). The characterization of lactic acid producing bacteria from the rumen of dairy cattle grazing on improved pasture supplemented with wheat and barley grain. J Appl Microbiol 104, 1754-1763.
    • (2008) J Appl Microbiol , vol.104 , pp. 1754-1763
    • Hernandez, J.D.1    Scott, P.T.2    Shephard, R.W.3    Al Jassim, R.A.M.4
  • 17
    • 77956851336 scopus 로고
    • Rumen bacteria
    • Hobson, P. N. (1969). Rumen bacteria. Methods Microbiol 3B, 133-149.
    • (1969) Methods Microbiol , vol.3 B , pp. 133-149
    • Hobson, P.N.1
  • 18
    • 0003535096 scopus 로고
    • 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
    • Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
    • (1977) Anaerobe Laboratory Manual
    • Holdeman, L.V.1    Cato, E.P.2    Moore, W.E.C.3
  • 24
    • 4043128209 scopus 로고    scopus 로고
    • Production of antimicrobial substances by lactic acid bacteria. I. Determination of hydrogen peroxide
    • Juárez Tomás, M. S., Otero, M. C., Ocaña, V. & Nader-Macías, M. E. (2004). Production of antimicrobial substances by lactic acid bacteria. I. Determination of hydrogen peroxide. Methods Mol Biol 268, 337-346.
    • (2004) Methods Mol Biol , vol.268 , pp. 337-346
    • Juárez Tomás, M.S.1    Otero, M.C.2    Ocaña, V.3    Nader-Macías, M.E.4
  • 25
    • 0038247864 scopus 로고    scopus 로고
    • A simple and rapid test for differentiation of aerobic from anaerobic bacteria
    • Karakashev, D., Galabova, D. & Simeonov, I. (2003). A simple and rapid test for differentiation of aerobic from anaerobic bacteria. World J Microbiol Biotechnol 19, 233-238.
    • (2003) World J Microbiol Biotechnol , vol.19 , pp. 233-238
    • Karakashev, D.1    Galabova, D.2    Simeonov, I.3
  • 27
    • 58949104350 scopus 로고    scopus 로고
    • Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti
    • Kraatz, M. & Taras, D. (2008). Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti. Int J Syst Evol Microbiol 58, 2755-2761.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2755-2761
    • Kraatz, M.1    Taras, D.2
  • 28
    • 65549084897 scopus 로고    scopus 로고
    • Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria
    • Krogius-Kurikka, L., Kassinen, A., Paulin, L., Corander, J., Mäkivuokko, H., Tuimala, J. & Palva, A. (2009). Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria. BMC Microbiol 9, 68.
    • (2009) BMC Microbiol , vol.9 , pp. 68
    • Krogius-Kurikka, L.1    Kassinen, A.2    Paulin, L.3    Corander, J.4    Mäkivuokko, H.5    Tuimala, J.6    Palva, A.7
  • 29
    • 11144241375 scopus 로고    scopus 로고
    • Anaerobic, non-sporulating, Gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing
    • Lau, S. K. P., Woo, P. C. Y., Fung, A. M. Y., Chan, K.-M., Woo, G. K. S. & Yuen, K.-Y. (2004). Anaerobic, non-sporulating, Gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing. J Med Microbiol 53, 1247-1253.
    • (2004) J Med Microbiol , vol.53 , pp. 1247-1253
    • Lau, S.K.P.1    Woo, P.C.Y.2    Fung, A.M.Y.3    Chan, K.-M.4    Woo, G.K.S.5    Yuen, K.-Y.6
  • 30
  • 31
    • 0242489005 scopus 로고    scopus 로고
    • Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
    • Lu, J. R., Idris, U., Harmon, B., Hofacre, C., Maurer, J. J. & Lee, M. D. (2003). Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl Environ Microbiol 69, 6816-6824.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6816-6824
    • Lu, J.R.1    Idris, U.2    Harmon, B.3    Hofacre, C.4    Maurer, J.J.5    Lee, M.D.6
  • 32
    • 33751556362 scopus 로고    scopus 로고
    • Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis
    • Martinez-Medina, M., Aldeguer, X., Gonzalez-Huix, F., Acero, D. & Garcia-Gil, L. J. (2006). Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis. Inflamm Bowel Dis 12, 1136-1145.
    • (2006) Inflamm Bowel Dis , vol.12 , pp. 1136-1145
    • Martinez-Medina, M.1    Aldeguer, X.2    Gonzalez-Huix, F.3    Acero, D.4    Garcia-Gil, L.J.5
  • 33
    • 0036828242 scopus 로고    scopus 로고
    • Molecular and cultural analysis of the microflora associated with endodontic infections
    • Munson, M. A., Pitt-Ford, T., Chong, B., Weightman, A. & Wade, W. G. (2002). Molecular and cultural analysis of the microflora associated with endodontic infections. J Dent Res 81, 761-766.
    • (2002) J Dent Res , vol.81 , pp. 761-766
    • Munson, M.A.1    Pitt-Ford, T.2    Chong, B.3    Weightman, A.4    Wade, W.G.5
  • 34
    • 3142757153 scopus 로고    scopus 로고
    • Molecular analysis of the microflora associated with dental caries
    • Munson, M. A., Banerjee, A., Watson, T. F. & Wade, W. G. (2004). Molecular analysis of the microflora associated with dental caries. J Clin Microbiol 42, 3023-3029.
    • (2004) J Clin Microbiol , vol.42 , pp. 3023-3029
    • Munson, M.A.1    Banerjee, A.2    Watson, T.F.3    Wade, W.G.4
  • 35
    • 0025762024 scopus 로고
    • Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the human gingival crevice and emended descriptions of Lactobacillus minutus and Streptococcus parvulus
    • Olsen, I., Johnson, J. L., Moore, L. V. H. & Moore, W. E. C. (1991). Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the human gingival crevice and emended descriptions of Lactobacillus minutus and Streptococcus parvulus. Int J Syst Bacteriol 41, 261-266.
    • (1991) Int J Syst Bacteriol , vol.41 , pp. 261-266
    • Olsen, I.1    Johnson, J.L.2    Moore, L.V.H.3    Moore, W.E.C.4
  • 37
    • 33748468180 scopus 로고    scopus 로고
    • 2-producing Lactobacillus gasseri isolated from the vaginal tract of cattle
    • 2-producing Lactobacillus gasseri isolated from the vaginal tract of cattle. Anim Reprod Sci 96, 35-46.
    • (2006) Anim Reprod Sci , vol.96 , pp. 35-46
    • Otero, M.C.1    Nader-Macías, M.E.2
  • 38
    • 17844369762 scopus 로고    scopus 로고
    • The effect of protozoa on the composition of rumen bacteria in cattle using 16S rRNA gene clone libraries
    • Ozutsumi, Y., Tajima, K., Takenaka, A. & Itabashi, H. (2005). The effect of protozoa on the composition of rumen bacteria in cattle using 16S rRNA gene clone libraries. Biosci Biotechnol Biochem 69, 499-506.
    • (2005) Biosci Biotechnol Biochem , vol.69 , pp. 499-506
    • Ozutsumi, Y.1    Tajima, K.2    Takenaka, A.3    Itabashi, H.4
  • 40
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9, 945-967.
    • (1992) Mol Biol Evol , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 42
    • 0029041260 scopus 로고
    • Analysis of short-chain fatty acids from different intestinal samples by capillary gas chromatography
    • Schäfer, K. (1995). Analysis of short-chain fatty acids from different intestinal samples by capillary gas chromatography. Chromatographia 40, 550-556.
    • (1995) Chromatographia , vol.40 , pp. 550-556
    • Schäfer, K.1
  • 43
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-653. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods For General and Molecular Bacteriology , pp. 607-653
    • Smibert, R.M.1    Krieg, N.R.2
  • 46
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K. & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10, 512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 47
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura, K., Nei, M. & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101, 11030-11035.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 48
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 49
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 50
    • 0036351880 scopus 로고    scopus 로고
    • Succinate accumulation in pig large intestine during antibiotic-associated diarrhea and the constitution of succinate-producing flora
    • Tsukahara, T. & Ushida, K. (2002). Succinate accumulation in pig large intestine during antibiotic-associated diarrhea and the constitution of succinate-producing flora. J Gen Appl Microbiol 48, 143-154.
    • (2002) J Gen Appl Microbiol , vol.48 , pp. 143-154
    • Tsukahara, T.1    Ushida, K.2
  • 51
    • 53149143854 scopus 로고    scopus 로고
    • Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense
    • Urdiain, M., López-López, A., Gonzalo, C., Busse, H.-J., Langer, S., Kämpfer, P. & Rosselló-Móra, R. (2008). Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense. Syst Appl Microbiol 31, 339-351.
    • (2008) Syst Appl Microbiol , vol.31 , pp. 339-351
    • Urdiain, M.1    López-López, A.2    Gonzalo, C.3    Busse, H.-J.4    Langer, S.5    Kämpfer, P.6    Rosselló-Móra, R.7
  • 53
    • 54349124512 scopus 로고    scopus 로고
    • Diversity of the resident microbiota in a thermophilic municipal biogas plant
    • Weiss, A., Jérôme, V., Freitag, R. & Mayer, H. K. (2008). Diversity of the resident microbiota in a thermophilic municipal biogas plant. Appl Microbiol Biotechnol 81, 163-173.
    • (2008) Appl Microbiol Biotechnol , vol.81 , pp. 163-173
    • Weiss, A.1    Jérôme, V.2    Freitag, R.3    Mayer, H.K.4
  • 56
    • 34547812767 scopus 로고    scopus 로고
    • Biohydrogen production by fermentative process in continuous stirred-tank reactor
    • Wongtanet, J., Sang, B.-I., Lee, S.-M. & Pak, D. (2007). Biohydrogen production by fermentative process in continuous stirred-tank reactor. Int J Green Energy 4, 385-395.
    • (2007) Int J Green Energy , vol.4 , pp. 385-395
    • Wongtanet, J.1    Sang, B.-I.2    Lee, S.-M.3    Pak, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.