-
1
-
-
0000002384
-
Post-transcriptional control of gene expression: bacterial mRNA degradation
-
Arriano C.M. Post-transcriptional control of gene expression: bacterial mRNA degradation. World J. Microbiol. Biotechol. 1993, 9:421-432.
-
(1993)
World J. Microbiol. Biotechol.
, vol.9
, pp. 421-432
-
-
Arriano, C.M.1
-
2
-
-
44849121863
-
Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
-
Baelum J., Nicolaisen M.H., Holben W.E., Strobel B.W., Sørensen J., Jacobsen C.S. Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil. Int. Soc. Microb. Ecol. 2008, 2:677-687.
-
(2008)
Int. Soc. Microb. Ecol.
, vol.2
, pp. 677-687
-
-
Baelum, J.1
Nicolaisen, M.H.2
Holben, W.E.3
Strobel, B.W.4
Sørensen, J.5
Jacobsen, C.S.6
-
3
-
-
77955926028
-
Direct detection of soil mRNAs using targeted microarrays for genes associated with lignin degradation
-
Bailey V.L., Fansler S.J., Bandyopadhyay S., Smith J.L., Waters K.M., Bolton H. Direct detection of soil mRNAs using targeted microarrays for genes associated with lignin degradation. Soil Biol. Biochem. 2010, 42:1793-1799.
-
(2010)
Soil Biol. Biochem.
, vol.42
, pp. 1793-1799
-
-
Bailey, V.L.1
Fansler, S.J.2
Bandyopadhyay, S.3
Smith, J.L.4
Waters, K.M.5
Bolton, H.6
-
4
-
-
0242668357
-
MRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil
-
Bürgmann H., Widmer F., Sigler W.V., Zeyer J. mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil. Appl. Env. Microbiol. 2003, 69:1928-1935.
-
(2003)
Appl. Env. Microbiol.
, vol.69
, pp. 1928-1935
-
-
Bürgmann, H.1
Widmer, F.2
Sigler, W.V.3
Zeyer, J.4
-
5
-
-
0029737394
-
Expression of lip genes during growth in soil and oxidation of anthracene by Phanerochaete chrysosporium
-
Bogan B.W., Schoenike B., Lamar R.T., Cullen D. Expression of lip genes during growth in soil and oxidation of anthracene by Phanerochaete chrysosporium. Appl. Environ. Microbiol. 1996, 62:3697-3703.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3697-3703
-
-
Bogan, B.W.1
Schoenike, B.2
Lamar, R.T.3
Cullen, D.4
-
6
-
-
0033775615
-
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
-
Bustin S.A. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol. 2000, 25:169-193.
-
(2000)
J. Mol. Endocrinol.
, vol.25
, pp. 169-193
-
-
Bustin, S.A.1
-
7
-
-
64149097786
-
The MIQE guidelines: minimum quantification for publication of quantitative real-time PCR experiments
-
Bustin S.A., Benes V., Garson J.S., Hellemans J., Huggett J., Kubista M., Mueller R., Nolan T., Pfaffl M.W., Shipley G.L., Vandesompele J., Wittwer C. The MIQE guidelines: minimum quantification for publication of quantitative real-time PCR experiments. Clin. Chem. 2009, 55:611-622.
-
(2009)
Clin. Chem.
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.S.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
Mueller, R.7
Nolan, T.8
Pfaffl, M.W.9
Shipley, G.L.10
Vandesompele, J.11
Wittwer, C.12
-
8
-
-
77953356429
-
Characteristics of Escherichia coli biofilm production, genetic typing, drug resistance pattern and gene expression under aminoglycoside pressure
-
Chen C., Liao X., Jiang H., Zhu H., Yue L., Li S., Fang B., Liu H. Characteristics of Escherichia coli biofilm production, genetic typing, drug resistance pattern and gene expression under aminoglycoside pressure. Environ. Toxicol. Pharmocol. 2010, 30:5-10.
-
(2010)
Environ. Toxicol. Pharmocol.
, vol.30
, pp. 5-10
-
-
Chen, C.1
Liao, X.2
Jiang, H.3
Zhu, H.4
Yue, L.5
Li, S.6
Fang, B.7
Liu, H.8
-
9
-
-
13544277388
-
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria
-
Davis K.E.R., Joseph S.J., Jannssen O.H. Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl. Environ. Microbiol. 2005, 71:826-834.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 826-834
-
-
Davis, K.E.R.1
Joseph, S.J.2
Jannssen, O.H.3
-
10
-
-
0035068240
-
Extraction and detection of baculoviral DNA from lake water detritus and forest litter
-
England L.S., Holmes S.B., Trevors J.T. Extraction and detection of baculoviral DNA from lake water detritus and forest litter. J. Appl. Microbiol. 2001, 90:194-205.
-
(2001)
J. Appl. Microbiol.
, vol.90
, pp. 194-205
-
-
England, L.S.1
Holmes, S.B.2
Trevors, J.T.3
-
11
-
-
0142027735
-
The microbial DNA cycle in soil
-
England L.S., Trevors J.T. The microbial DNA cycle in soil. Biol. Forum. 2003, 96:249-258.
-
(2003)
Biol. Forum.
, vol.96
, pp. 249-258
-
-
England, L.S.1
Trevors, J.T.2
-
12
-
-
29144482711
-
Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
-
Ferrari B.C., Binnerup S.J., Gillings M. Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Appl. Env. Microbiol. 2005, 71:8714-8720.
-
(2005)
Appl. Env. Microbiol.
, vol.71
, pp. 8714-8720
-
-
Ferrari, B.C.1
Binnerup, S.J.2
Gillings, M.3
-
13
-
-
70350475884
-
Correlation of methane production and functional gene transcriptional activity in a peat soil
-
Freitag T.E., Prosser J.I. Correlation of methane production and functional gene transcriptional activity in a peat soil. Appl. Environ. Microbiol. 2009, 75:6679-6687.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6679-6687
-
-
Freitag, T.E.1
Prosser, J.I.2
-
14
-
-
77950289122
-
Changes in denitrifier abundance, denitrification gene mRNA levels, nitrous oxide emissions and denitrification in anoxic soil microcosms amended with glucose and plant residues
-
Henderson S.L., Dandie C.E., Patten C.L., Zebarth B.J., Burton D.L., Trevors J.T., Goyer C.M. Changes in denitrifier abundance, denitrification gene mRNA levels, nitrous oxide emissions and denitrification in anoxic soil microcosms amended with glucose and plant residues. Appl. Environ. Microbiol. 2010, 76:2155-2164.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2155-2164
-
-
Henderson, S.L.1
Dandie, C.E.2
Patten, C.L.3
Zebarth, B.J.4
Burton, D.L.5
Trevors, J.T.6
Goyer, C.M.7
-
15
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt R.A., Qui X., Wu L., Roh Y., Palumbo A.V., Tiedje J.M., Zhou J. Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol. 2001, 67:4495-4503.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
Qui, X.2
Wu, L.3
Roh, Y.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.7
-
16
-
-
0036250036
-
Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
-
Janssen P.H., Yates P.S., Grinton B.E., Taylor P.M., Sait M. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl. Environ. Microbiol. 2002, 68:2391-2396.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2391-2396
-
-
Janssen, P.H.1
Yates, P.S.2
Grinton, B.E.3
Taylor, P.M.4
Sait, M.5
-
17
-
-
2142687113
-
Laboratory cultivation of widespread and previously uncultured soil bacteria
-
Joseph S.J., Hugenholtz P., Sangwan P., Osborne C.A., Janssen P. Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl. Environ. Microbiol. 2003, 69:7210-7215.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7210-7215
-
-
Joseph, S.J.1
Hugenholtz, P.2
Sangwan, P.3
Osborne, C.A.4
Janssen, P.5
-
18
-
-
33646759934
-
Expression analysis of stress-specific responsive genes in two-stage continuous cultures of Escherichia coli using cDNA microarray and real-time RT-PCR analysis
-
Kim B.C., Gu M.B. Expression analysis of stress-specific responsive genes in two-stage continuous cultures of Escherichia coli using cDNA microarray and real-time RT-PCR analysis. Enzyme Microb. Technol. 2006, 39:440-446.
-
(2006)
Enzyme Microb. Technol.
, vol.39
, pp. 440-446
-
-
Kim, B.C.1
Gu, M.B.2
-
19
-
-
0030048084
-
Relief of amplication inhibition in PCR with bovine serum albumin or T4 gene 32 protein
-
Kreader C. Relief of amplication inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl. Environ. Microbiol. 1996, 62:1102-1106.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1102-1106
-
-
Kreader, C.1
-
20
-
-
77951959969
-
Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH
-
Liu B., Mǿrkved P.T., Frostegard A., Bakken L.R. Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH. FEMS Microbiol. Ecol. 2010, 72:407-417.
-
(2010)
FEMS Microbiol. Ecol.
, vol.72
, pp. 407-417
-
-
Liu, B.1
Mǿrkved, P.T.2
Frostegard, A.3
Bakken, L.R.4
-
21
-
-
0032528138
-
The detection of gram-negative bacterial mRNA from soil by RT-PCR
-
Mendum T.A., Sockett R.E., Hirsch P.R. The detection of gram-negative bacterial mRNA from soil by RT-PCR. FEMS Microbiol. Lett. 1998, 164:369-373.
-
(1998)
FEMS Microbiol. Lett.
, vol.164
, pp. 369-373
-
-
Mendum, T.A.1
Sockett, R.E.2
Hirsch, P.R.3
-
22
-
-
0042668493
-
Molecular cloning, characterisation, and expression of a cDNA encoding an andochitinase gene from the mycoparasite Stachybotrys elegans
-
Morissette D.C., Driscoll B.T., Jabaji-Harea S. Molecular cloning, characterisation, and expression of a cDNA encoding an andochitinase gene from the mycoparasite Stachybotrys elegans. Fungal Genet. Biol. 2003, 39:276-285.
-
(2003)
Fungal Genet. Biol.
, vol.39
, pp. 276-285
-
-
Morissette, D.C.1
Driscoll, B.T.2
Jabaji-Harea, S.3
-
23
-
-
0036793715
-
Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
-
Nogales B., Timmis K.N., Nedwell D.B., Osborn A.M. Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl. Env. Microbiol. 2002, 68:5017-5025.
-
(2002)
Appl. Env. Microbiol.
, vol.68
, pp. 5017-5025
-
-
Nogales, B.1
Timmis, K.N.2
Nedwell, D.B.3
Osborn, A.M.4
-
24
-
-
0036657564
-
Molecular and functional diversity in soil microorganisms
-
Prosser J.I. Molecular and functional diversity in soil microorganisms. Plant Soil 2002, 244:9-17.
-
(2002)
Plant Soil
, vol.244
, pp. 9-17
-
-
Prosser, J.I.1
-
25
-
-
24644499924
-
Microbial gene expression in soil: methods, applications and challenges
-
Saleh-Lakha S., Miller M., Campbell R.G., Schneider K., Elahimanesh P., Hart M.M., Trevors J.T. Microbial gene expression in soil: methods, applications and challenges. J. Microbiol. Methods. 2005, 63:1-19.
-
(2005)
J. Microbiol. Methods.
, vol.63
, pp. 1-19
-
-
Saleh-Lakha, S.1
Miller, M.2
Campbell, R.G.3
Schneider, K.4
Elahimanesh, P.5
Hart, M.M.6
Trevors, J.T.7
-
26
-
-
55949091794
-
Nitric oxide reductase gene expression and nitrous oxide production in nitrate-grown Pseudomonas mandelii
-
Saleh-Lakha S., Shannon K.E., Goyer C., Trevors J.T., Zebarth B.J., Burton D. Nitric oxide reductase gene expression and nitrous oxide production in nitrate-grown Pseudomonas mandelii. Appl. Environ. Microbiol. 2008, 74:6876-6879.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 6876-6879
-
-
Saleh-Lakha, S.1
Shannon, K.E.2
Goyer, C.3
Trevors, J.T.4
Zebarth, B.J.5
Burton, D.6
-
27
-
-
67651247175
-
Effect of nitrate and acetylene on denitrification gene expression and nitrous oxide production in Pseudomonas mandelii
-
Saleh-Lakha S., Shannon K.E., Henderson S.L., Goyer C., Trevors J.T., Zebarth B.J., Burton D. Effect of nitrate and acetylene on denitrification gene expression and nitrous oxide production in Pseudomonas mandelii. Appl. Environ. Microbiol. 2009, 75:5082-5087.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5082-5087
-
-
Saleh-Lakha, S.1
Shannon, K.E.2
Henderson, S.L.3
Goyer, C.4
Trevors, J.T.5
Zebarth, B.J.6
Burton, D.7
-
28
-
-
67149109754
-
Effect of pH and temperature on denitrification gene expression and nitrous oxide production in Pseudomonas mandelii
-
Saleh-Lakha S., Shannon K.E., Henderson S.L., Goyer C., Trevors J.T., Zebarth B.J., Burton D. Effect of pH and temperature on denitrification gene expression and nitrous oxide production in Pseudomonas mandelii. Appl. Environ. Microbiol. 2009, 75:3903-3911.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3903-3911
-
-
Saleh-Lakha, S.1
Shannon, K.E.2
Henderson, S.L.3
Goyer, C.4
Trevors, J.T.5
Zebarth, B.J.6
Burton, D.7
-
29
-
-
0035476674
-
Gene expression monitoring in soils by mRNA analysis and gene lux fusions
-
Sayler G.S., Fleming J.T., Nivens D.E. Gene expression monitoring in soils by mRNA analysis and gene lux fusions. Curr. Opin. Biotech. 2001, 12:455-460.
-
(2001)
Curr. Opin. Biotech.
, vol.12
, pp. 455-460
-
-
Sayler, G.S.1
Fleming, J.T.2
Nivens, D.E.3
-
30
-
-
8744263850
-
Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi
-
Schena L., Nigro F., Ippolito A., Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur. J. Plant. Path. 2004, 110:893-908.
-
(2004)
Eur. J. Plant. Path.
, vol.110
, pp. 893-908
-
-
Schena, L.1
Nigro, F.2
Ippolito, A.3
Gallitelli, D.4
-
31
-
-
0036069298
-
RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocols
-
Sessitsch A., Gyamfi S., Stralis-Pavese N., Weilharter A., Pfeifer U. RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocols. J. Microbiol. Methods. 2002, 51:171-179.
-
(2002)
J. Microbiol. Methods.
, vol.51
, pp. 171-179
-
-
Sessitsch, A.1
Gyamfi, S.2
Stralis-Pavese, N.3
Weilharter, A.4
Pfeifer, U.5
-
32
-
-
79955122014
-
Effect of nitrate and glucose addition on denitrification and nitric oxide reductase (cnorB) gene abundance and mRNA levels in Pseudomonas mandelii inoculated into anoxic soil
-
in press.
-
Shannon, K.E., Saleh-Lakha, S., Burton, D.L., Zebarth, B.J., Goyer, C., Trevors, J.T., in press. Effect of nitrate and glucose addition on denitrification and nitric oxide reductase (cnorB) gene abundance and mRNA levels in Pseudomonas mandelii inoculated into anoxic soil. Antonie van Leeuwenhoek.
-
Antonie van Leeuwenhoek.
-
-
Shannon, K.E.1
Saleh-Lakha, S.2
Burton, D.L.3
Zebarth, B.J.4
Goyer, C.5
Trevors, J.T.6
-
33
-
-
33847334185
-
Quantification of functional genes from prokaryotes in soil by PCR
-
Sharma S., Radl V., Hai B., Kloos K., Fuka M.M., Engel M., Schauss K., Schloter M. Quantification of functional genes from prokaryotes in soil by PCR. J. Microbiol. Methods. 2007, 68:445-452.
-
(2007)
J. Microbiol. Methods.
, vol.68
, pp. 445-452
-
-
Sharma, S.1
Radl, V.2
Hai, B.3
Kloos, K.4
Fuka, M.M.5
Engel, M.6
Schauss, K.7
Schloter, M.8
-
34
-
-
28644435323
-
Novel genes for nitrite reductase and amo-related proteins indicate role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch A.H., Leininger S., Kletzin A., Schuster S.C., Klenk H.-P., Schleper C. Novel genes for nitrite reductase and amo-related proteins indicate role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 2005, 7:1985-1995.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.-P.5
Schleper, C.6
-
35
-
-
0029938247
-
Nucleic acids in the environment
-
Trevors J.T. Nucleic acids in the environment. Curr. Opin. Biotechnol. 1996, 7:331-336.
-
(1996)
Curr. Opin. Biotechnol.
, vol.7
, pp. 331-336
-
-
Trevors, J.T.1
-
36
-
-
33644868717
-
Analysis of one-step and two-step real-time RT-PCR using superscript III
-
Wacker M.J., Godard M.P. Analysis of one-step and two-step real-time RT-PCR using superscript III. J. Biomol. Tech. 2005, 16:266-271.
-
(2005)
J. Biomol. Tech.
, vol.16
, pp. 266-271
-
-
Wacker, M.J.1
Godard, M.P.2
-
37
-
-
33845492873
-
Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods
-
Wallenstein M.D., Myrold D.D., Firestone M., Voytek M. Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecol. Appl. 2006, 16:2143-2152.
-
(2006)
Ecol. Appl.
, vol.16
, pp. 2143-2152
-
-
Wallenstein, M.D.1
Myrold, D.D.2
Firestone, M.3
Voytek, M.4
-
38
-
-
41549145885
-
Detection of bphAa gene expression of Rhodococcus sp. Strain RHA1 in soil using a new method of RNA preparation from soil
-
Wang Y., Shimodaira J., Miyasaka T., Morimoto S., Oomori T., Ogawam N., Fukuda M., Fujii T. Detection of bphAa gene expression of Rhodococcus sp. Strain RHA1 in soil using a new method of RNA preparation from soil. Biosci. Biotech. Biochem. 2008, 72:694-701.
-
(2008)
Biosci. Biotech. Biochem.
, vol.72
, pp. 694-701
-
-
Wang, Y.1
Shimodaira, J.2
Miyasaka, T.3
Morimoto, S.4
Oomori, T.5
Ogawam, N.6
Fukuda, M.7
Fujii, T.8
-
39
-
-
0038265142
-
Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing
-
Wellington E.M.H., Berry A., Krsek M. Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing. Curr. Opin. Microb. 2003, 295-301.
-
(2003)
Curr. Opin. Microb.
, pp. 295-301
-
-
Wellington, E.M.H.1
Berry, A.2
Krsek, M.3
-
40
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft W.G. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 1997, 61:533-616.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
|