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1
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0026870117
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Direct recovery and molecular analysis of DNA and RNA from soil
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Selenska S, Klingmuller W: Direct recovery and molecular analysis of DNA and RNA from soil. Microb Releases 1992, 1:41-46.
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(1992)
Microb Releases
, vol.1
, pp. 41-46
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Selenska, S.1
Klingmuller, W.2
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2
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0002994685
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Applications of the polymerase chain reaction (PCR) in vitro DNA-amplification method in environmental microbiology
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Edited by Griffin HG, Griffin AM. Boca Raton: CRC Press
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Bej AK, Mahbubani MH: Applications of the polymerase chain reaction (PCR) in vitro DNA-amplification method in environmental microbiology. In PCR Technology: Current innovations, Edited by Griffin HG, Griffin AM. Boca Raton: CRC Press; 1994:327-339.
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(1994)
PCR Technology: Current Innovations
, pp. 327-339
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Bej, A.K.1
Mahbubani, M.H.2
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4
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0003654766
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Heidelberg: Springer-Verlag
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Trevors JT, Van Elsas JD (Eds): Nucleic Acids in the Environment: Methods and Applications. Heidelberg: Springer-Verlag; 1995. This text contains theory and methods for extraction, purification and amplification of nucleic acids from environmental samples. Topics discussed include recovery of bacterial cells from soil, direct extraction of DNA from soil, extraction and amplification of DNA from the rhizosphere and rhizoplane of plants, extraction of DN A from the phyllosphere, specific DNA sequences for the detection of soil bacteria, PCR amplification of DNA from root nodules, extraction of DNA/RNA from aquatic environments, PCR amplification of DNA recovered from the aquatic environment, extraction and amplification of 16S rRNA genes from deep marine sediments and PCR for detection of antibiotic resistance genes in environmental samples.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
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Trevors, J.T.1
Van Elsas, J.D.2
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5
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0025893814
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Rapid method for direct extraction of mRNA from seeded soils
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Tsai YL, Park MJ, Olson BH: Rapid method for direct extraction of mRNA from seeded soils. Appl Environ Microbiol 1991, 57:765-768.
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(1991)
Appl Environ Microbiol
, vol.57
, pp. 765-768
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Tsai, Y.L.1
Park, M.J.2
Olson, B.H.3
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6
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0025919297
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Detection of gene expression in genetically engineered microorganisms and natural phytoplankton populations in the marine environment by mRNA analysis
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Pichard SL, Paul JH: Detection of gene expression in genetically engineered microorganisms and natural phytoplankton populations in the marine environment by mRNA analysis. Appl Environ Microbiol 1994, 57:1721-1727. A useful manuscript that describes the extraction of mRNA from aquatic samples, allowing an analysis of gene expression.
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(1994)
Appl Environ Microbiol
, vol.57
, pp. 1721-1727
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Pichard, S.L.1
Paul, J.H.2
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7
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0002649845
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Extraction, purification and analysis of DNA from soil bacteria
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Torsvik V, Daae FL, Goksoyr J: Extraction, purification and analysis of DNA from soil bacteria. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:29-48.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 29-48
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Torsvik, V.1
Daae, F.L.2
Goksoyr, J.3
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8
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0001882778
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Extraction and amplification of DNA from the rhizosphere and rhizoplane of plants
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Leung K, Trevors JT, Van Elsas JD: Extraction and amplification of DNA from the rhizosphere and rhizoplane of plants. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:69-87.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 69-87
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Leung, K.1
Trevors, J.T.2
Van Elsas, J.D.3
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9
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0001782023
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Use of DNA analysis to determine the diversity of microbial communities
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Edited by Ritz K, Dighton J, Giller KE. London: British Society of Soil Science/Wiley-Sayce Publications
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Torsvik V, Goksoyr J, Daae FL, Sorheim R, Michalsen J, Salte K: Use of DNA analysis to determine the diversity of microbial communities. In Beyond the Biomass. Edited by Ritz K, Dighton J, Giller KE. London: British Society of Soil Science/Wiley-Sayce Publications; 1994:39-48. An excellent paper on DNA diversity in soil microbial populations on the basis of DNA reassociation of highly purified microbial DNA from soil microorganisms. The diversity of the total soil microbial community is in the order of thousands of species.
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(1994)
Beyond the Biomass
, pp. 39-48
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Torsvik, V.1
Goksoyr, J.2
Daae, F.L.3
Sorheim, R.4
Michalsen, J.5
Salte, K.6
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10
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0027976839
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Molecular marker systems for detection of genetically engineered micro-organisms in the environment
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Prosser JI: Molecular marker systems for detection of genetically engineered micro-organisms in the environment. Microbiology 1994, 140:5-17. This is an excellent review of marker/reporter genes for use in the environment.
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(1994)
Microbiology
, vol.140
, pp. 5-17
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Prosser, J.I.1
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11
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0028212861
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Survival of a lux-lac marked biosurfactant-producing Pseudomonas aeruginosa UG2 strain in soil: Monitored by non-selective plating and PCR techniques
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Flemming CA, Leung KT, Lee H, Trevors JT, Greer C: Survival of a lux-lac marked biosurfactant-producing Pseudomonas aeruginosa UG2 strain in soil: monitored by non-selective plating and PCR techniques. Appl Environ Microbiol 1994, 60:1606-1613.
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(1994)
Appl Environ Microbiol
, vol.60
, pp. 1606-1613
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Flemming, C.A.1
Leung, K.T.2
Lee, H.3
Trevors, J.T.4
Greer, C.5
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12
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0029776180
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Survival and polymerase chain reaction detection of luxAB-marked Alcaligenes eutrophus H850 in PCB-contaminated soil and sediment in the presence of rhamnolipid biosurfactants
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Van Dyke MI, Lee H, Trevors JT: Survival and polymerase chain reaction detection of luxAB-marked Alcaligenes eutrophus H850 in PCB-contaminated soil and sediment in the presence of rhamnolipid biosurfactants. J Chem Technol Biotechnol 1996, 65:115-122.
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(1996)
J Chem Technol Biotechnol
, vol.65
, pp. 115-122
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Van Dyke, M.I.1
Lee, H.2
Trevors, J.T.3
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13
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0028985502
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Survival of carrageenan-encapsulated and unencapsulated Pseudomonas aeruginosa UG2Lr in a forest soil: Monitored by polymerase chain reaction and viable plating
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Leung K, Cassidy M, Holmes, Lee H, Trevors JT: Survival of carrageenan-encapsulated and unencapsulated Pseudomonas aeruginosa UG2Lr in a forest soil: monitored by polymerase chain reaction and viable plating. FEMS Microbiol Ecol 1995,16:71-82.
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(1995)
FEMS Microbiol Ecol
, vol.16
, pp. 71-82
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Leung, K.1
Cassidy, M.2
Holmes3
Lee, H.4
Trevors, J.T.5
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14
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0028136885
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Bacterial gene transfer by natural genetic transformation in the environment
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Lorenz MG, Wackernagel W: Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 1994, 58:563-60 A review on natural genetic transformation in the environment as a mechanism of gene transfer or gene flow. The authors provide an excellent description of the fundamentals of natural genetic transformation and the bacterial species involved.
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(1994)
Microbiol Rev
, vol.58
, pp. 563-660
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Lorenz, M.G.1
Wackernagel, W.2
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15
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0030426157
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DNA in soil: Adsorption, genetic transformation and molecular evolution
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in press
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Trevors JT: DNA in soil: adsorption, genetic transformation and molecular evolution. Antonie van Leeuwenhoek 1996, in press.
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(1996)
Antonie Van Leeuwenhoek
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Trevors, J.T.1
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16
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0342288046
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The effect of divalent cations on the frequency of natural transformation in Pseudomonas stutzeri strain Zobell in marine sediment
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Stewart GJ, Garko KA: The effect of divalent cations on the frequency of natural transformation in Pseudomonas stutzeri strain Zobell in marine sediment. Microb Releases 1994, 2:201-207.
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(1994)
Microb Releases
, vol.2
, pp. 201-207
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Stewart, G.J.1
Garko, K.A.2
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17
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0006136056
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The effect of divalent cations on the binding of divalent cations to marine sediment
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Garko KA, Stewart GJ: The effect of divalent cations on the binding of divalent cations to marine sediment. Microb Releases 1994, 2:191-199.
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(1994)
Microb Releases
, vol.2
, pp. 191-199
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Garko, K.A.1
Stewart, G.J.2
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18
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0028057740
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Effects of DNA polymer length on its adsorption to soils
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Ogram AV, Mathot ML, Harsh JB, Boyle J, Peltigrew CA Jr: Effects of DNA polymer length on its adsorption to soils. Appl Environ Microbiol 1994, 60:393-396.
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(1994)
Appl Environ Microbiol
, vol.60
, pp. 393-396
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Ogram, A.V.1
Mathot, M.L.2
Harsh, J.B.3
Boyle, J.4
Peltigrew C.A., Jr.5
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19
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0028836985
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Expression vectors for the use of eukaryotic luciferases with different colors of luminescence
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Cebolla A, Vazquez ME, Palomares AJ: Expression vectors for the use of eukaryotic luciferases with different colors of luminescence. Appl Environ Microbiol 1995, 61:660-668.
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(1995)
Appl Environ Microbiol
, vol.61
, pp. 660-668
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Cebolla, A.1
Vazquez, M.E.2
Palomares, A.J.3
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20
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23444431611
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Green fluorescent protein as a marker for gene expression
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Chalfie M, Tu Y, Euskirchen G, Ward WW, Prasher DC: Green fluorescent protein as a marker for gene expression. Science 1994, 263:802-805. The description of GFP as a marker reporter gene for use in biological research. This is an excellent paper that has stimulated a considerable amount of research on the use of GFP as a marker gene.
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(1994)
Science
, vol.263
, pp. 802-805
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Chalfie, M.1
Tu, Y.2
Euskirchen, G.3
Ward, W.W.4
Prasher, D.C.5
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21
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0003462220
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Dordrecht: Kluwer Academic Publishers
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Akkermens ADL, Van Elsas JD, De Bruijn FJ (Eds): Molecular Microbial Ecology Manual. Dordrecht: Kluwer Academic Publishers; 1995. This comprehensive manual contains molecular protocols relevant in microbial ecology research. The manual is divided into seven sections: isolation of microbial nucleic acids, detection of microbial nucleic acid sequences, identification and classification of microbes using DNA and RNA sequences, detection of gene transfer in the environment, tracking of specific microbes in the environment, and designing field and microcosm experiments with GEMs.
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(1995)
Molecular Microbial Ecology Manual
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Akkermens, A.D.L.1
Van Elsas, J.D.2
De Bruijn, F.J.3
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22
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0002716765
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Extraction and analysis of microbial DNA from soil
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Saano A, Tas E, Pippola S, Lindstrom K, Van Elsas JD: Extraction and analysis of microbial DNA from soil. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:49-67.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 49-67
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Saano, A.1
Tas, E.2
Pippola, S.3
Lindstrom, K.4
Van Elsas, J.D.5
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23
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0001930098
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Extraction of DNA from the phyllosphere
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Bailey MJ: Extraction of DNA from the phyllosphere. In Nucleic Acids in the Environment: Methods and Applications, Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:89-109.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 89-109
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Bailey, M.J.1
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24
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0003132082
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Specific DNA sequences for detection of soil bacteria
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Nesme X, Picard C, Simonet P: Specific DNA sequences for detection of soil bacteria. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:112-139.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 112-139
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Nesme, X.1
Picard, C.2
Simonet, P.3
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25
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0343157636
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PCR amplification of DNA from root nodules
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Pepper IL, Pillai SD: PCR amplification of DNA from root nodules. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:141-151.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 141-151
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Pepper, I.L.1
Pillai, S.D.2
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26
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0008661871
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Extraction of DNA and RNA from aquatic environments
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Paul JH, Richard SL: Extraction of DNA and RNA from aquatic environments. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:154-177.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 154-177
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Paul, J.H.1
Richard, S.L.2
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27
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0343157635
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PCR amplification of DNA recovered from the aquatic environment
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Bej AK: PCR amplification of DNA recovered from the aquatic environment. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:179-218.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 179-218
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Bej, A.K.1
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28
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0002613892
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Extraction and amplification of 16S rRNA genes from deep marine sediments and seawater to assess bacterial community diversity
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Rochelle PA, Will JAK, Fry JC, Jenkins GJS, Parkes RJ, Turley CM, Weightman AJ: Extraction and amplification of 16S rRNA genes from deep marine sediments and seawater to assess bacterial community diversity. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:119-239.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 119-239
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Rochelle, P.A.1
Will, J.A.K.2
Fry, J.C.3
Jenkins, G.J.S.4
Parkes, R.J.5
Turley, C.M.6
Weightman, A.J.7
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29
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0001881657
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Application of the PCR for detection of antibiotic resistance genes in environmental samples
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Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag
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Smalla K, Van Elsas JD: Application of the PCR for detection of antibiotic resistance genes in environmental samples. In Nucleic Acids in the Environment: Methods and Applications. Edited by Trevors JT, Van Elsas JD. Heidelberg: Springer-Verlag; 1995:242-256.
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(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 242-256
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Smalla, K.1
Van Elsas, J.D.2
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30
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0002769671
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Detection of specific DNA sequences in environmental samples via polymerase chain reaction
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Madison: Soil Science Society of America
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Pepper IL, Pillai SD: Detection of specific DNA sequences in environmental samples via polymerase chain reaction. In Methods of Soil Analysis Part 2: Microbiological and Biochemical Properties. Madison: Soil Science Society of America; 1994:707-726.
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(1994)
Methods of Soil Analysis Part 2: Microbiological and Biochemical Properties
, pp. 707-726
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Pepper, I.L.1
Pillai, S.D.2
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32
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0028149512
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Key issues in the deliberate release of genetically-manipulated bacteria
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Ryder M: Key issues in the deliberate release of genetically-manipulated bacteria. FEMS Microbiol Ecol 1994, 15:139-146.
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(1994)
FEMS Microbiol Ecol
, vol.15
, pp. 139-146
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Ryder, M.1
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33
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0028998781
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Molecular evolution in bacteria
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Trevors J: Molecular evolution in bacteria. Antonie Van Leeuwenhoek 1995, 67:315-324.
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(1995)
Antonie Van Leeuwenhoek
, vol.67
, pp. 315-324
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Trevors, J.1
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