Effect of nitrate and acetylene on nirS, cnorB, and nosZ expression and denitrification activity in Pseudomonas mandelii

Applied and Environmental Microbiology

Volumn 75, Issue 15, 2009, Pages 5082-5087

  Saleh Lakha, Saleema ^a,b   Shannon, Kelly E ^a,b   Henderson, Sherri L ^a   Zebarth, Bernie J ^a   Burton, David L ^c   Goyer, Claudia ^a   Trevors, Jack T ^b  

^a FREDERICTON RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^b UNIVERSITY OF GUELPH   (Canada)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DENITRIFICATION PROCESS; ELECTRON ACCEPTOR; NITRATE CONCENTRATION; QUANTITATIVE PCR; REVERSE TRANSCRIPTION;

ACETYLENE; BIOACTIVITY; CHROMATOGRAPHIC ANALYSIS; DENITRIFICATION; GAS CHROMATOGRAPHY; LIGHTING; NITRATES; OPTICAL SENSORS;

TRANSCRIPTION;

ACETYLENE; NITRATE; NITRIC OXIDE REDUCTASE; NITRITE REDUCTASE; POTASSIUM NITRATE;

ACETYLENE; BACTERIUM; DENITRIFICATION; ENZYME ACTIVITY; GAS CHROMATOGRAPHY; GENE EXPRESSION; MICROBIAL ACTIVITY; NITRATE; POLYMERASE CHAIN REACTION; POTASSIUM;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM CULTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DENITRIFICATION; GAS CHROMATOGRAPHY; GENE EXPRESSION; GENE INDUCTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOMONAS; PSEUDOMONAS MANDELII; QUANTITATIVE ASSAY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ACETYLENE; BACTERIAL PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; NITRATES; PSEUDOMONAS;

PSEUDOMONAS MANDELII;

EID: 67651247175     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00777-09     Document Type: Article

References (26)

1. Arai, H., T. Kodama, and Y. Igarashi. 1999. Effect of nitrogen oxides on expression of the nir and nor genes for denitrification in Pseudomonas aeruginosa. FEMS Microbiol. Lett. 170:19-24.
2. Arai, H., M. Masayuki, and Y. Igarashi. 2003. Transcriptional regulation of the nos genes or nitrous oxide reductase in Pseudomonas aeruginosa. Microbiology 149:29-36.
3. Balderstone, W. L., B. Sherr, and W. J. Payne. 1976. Blockage by acetylene of nitrous oxide reduction in Pseudomonas perfectomarinus. Appl. Environ. Microbiol. 31:504-508.
4. Bergaust, L., J. Shapleigh, Å. Frostegård, and L. Bakken. 2008. Transcription and activities of NOx reductases in Agrobacterium tumefaciens: the influence of nitrate, nitrite, and oxygen availability. Environ. Microbiol. 10:3070-3081.
5. Carlson, C. A., and J. L. Ingraham. 1983. Comparison of denitrification by Pseudomonas stutzeri, Pseudomonas aeruginosa, and Paracoccus denitrificans. Appl. Environ. Microbiol. 45:1247-1253.
6. Dandie, C. E., D. L. Burton, B. J. Zebarth, S. L. Henderson, J. T. Trevors, and C. Goyer. 2008. Changes in bacterial denitrifier community abundance over time in an agricultural field and their relationship with denitrification activity. Appl. Environ. Microbiol. 74:5997-6005.
7. Dandie, C. E., D. L. Burton, B. J. Zebarth, J. T. Trevors, and C. Goyer. 2007. Analysis of denitrification genes and comparison of nosZ, cnorB, and 16S rDNA from culturable denitrifying bacteria in potato cropping systems. Syst. Appl. Microbiol. 30:128-138.
8. Dandie, C. E., M. N. Miller, D. L. Burton, B. J. Zebarth, J. T. Trevors, and C. Goyer. 2007. Nitric oxide reductase-targeted real-time PCR quantification of denitrifier populations in soil. Appl. Environ. Microbiol. 73:4250-4258.
9. Hartig, E., U. Schiek, K. U. Vollack, and W. G. Zumft. 1999. Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli. J. Bacteriol. 181:3658-3665.
10. Hartig, E., and W. G. Zumft. 1999. Kinetics of nirS expression (cytochrome cd1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system. J. Bacteriol. 181:161-166.
11. Jarvis, S. C., D. J. Hatch, and R. D. Lovell. 2001. An improved soil core incubation methods for the field measurement of denitrification and net mineralization using acetylene inhibition. Nutr. Cycl. Agroecosys. 59:219-225.
12. Knowles, R. 1982. Denitrification. Microbiol. Rev. 46:43-70.
13. Körner, H. 1993. Anaerobic expression of nitric oxide reductase from denitrifying Pseudomonas stutzeri. Arch. Microbiol. 159:410-416.
14. Körner, H., and W. G. Zumft. 1989. Expression of denitrification enzymes in response to the dissolved oxygen level and respiratory substrate in continuous culture of Pseudomonas stutzeri. Appl. Environ. Microbiol. 55:1670-1676.
15. 2O emissions and denitrifier community abundance in soil. Soil Biol. Biochem. 40:2553-2562.
16. Moraghan, J. T., and R. Buresh. 1977. Correction for dissolved nitrous oxide in nitrogen studies. Soil Sci. Soc. Am. J. 41:1201-1202.
17. Müller, M. M., V. Sundman, and J. Skujins. 1980. Denitrification in low pH spodosols and peats determined with the acetylene inhibition method. Appl. Environ. Microbiol. 40:235-239.
18. Parkin, T. B., A. J. Sexstone, and J. M. Tiedje. 1985. Adaptation of denitrifying population to low soil pH. Appl. Environ. Microbiol. 49:1053-1056.
19. Saleh-Lakha, S., K. E. Shannon, C. Goyer, J. T. Trevors, B. J. Zebarth, and D. L. Burton. 2008. Nitric oxide reductase gene expression and nitrous oxide production in nitrate-grown Pseudomonas mandelii. Appl. Environ. Microbiol. 74:6876-6879.
20. Smith, M. S., M. K. Firestone, and J. M. Tiedje. 1978. The acetylene inhibition method for short-term measurement of soil denitrification and is evaluation using nitrogen-13. Soil Sci. Soc. Am. J. 42:611-615.
21. Tate, R. L., III. 2000. Denitrification, p. 404-432. In Soil microbiology, 2nd ed. John Wiley, Inc., New York, NY.
22. Thomas, K. L., D. Lloyd, and L. Boddy. 1994. Effects of oxygen, pH and nitrate concentration on denitrification by Pseudomonas species. FEMS Microbiol. Lett. 118:181-186.
23. Van Raalte, C. D., and D. G. Patriquin. 1979. Use of the acetylene blockage technique for assaying denitrification in a salt marsh. Mar. Biol. 52:315-320.
24. Vollack, K. U., and W. G. Zumft. 2001. Nitric oxide signaling and transcriptional control of denitrification genes in Pseudomonas stutzeri. J. Bacteriol. 183:2516-2526.
25. Yoshinari, T., and R. Knowles. 1976. Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria. Biochem. Biophys. Res. Commun. 69:705-710.
26. Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.