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Volumn 42, Issue 10, 2010, Pages 1793-1799

Direct detection of soil mRNAs using targeted microarrays for genes associated with lignin degradation

Author keywords

Gene expression; Lignin degradation; Microarray; MRNA

Indexed keywords

AMPLICONS; AMPLIFICATION STRATEGY; BEFORE AND AFTER; DEGRADING ENZYMES; DIRECT ASSESSMENT; DIRECT DETECTION; DYNAMIC RANGE; EXPRESSION PROFILE; KLENOW FRAGMENT; LIGNIN DEGRADATION; MICROBIAL COMMUNITIES; MICROBIAL SYSTEM; MRNA; PHANEROCHAETE CHRYSOSPORIUM; ROBUST SIGNALS; SIGNAL AMPLIFICATIONS;

EID: 77955926028     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2010.06.017     Document Type: Article
Times cited : (4)

References (26)
  • 2
    • 0036721418 scopus 로고    scopus 로고
    • Relationships between soil microbial biomass determined by chloroform fumigation-extraction, substrate induced respiration, and lipid extraction
    • Bailey V.L., Peacock A.D., Smith J.L., Bolton H. Relationships between soil microbial biomass determined by chloroform fumigation-extraction, substrate induced respiration, and lipid extraction. Soil Biology & Biochemistry 2002, 34:1385-1389.
    • (2002) Soil Biology & Biochemistry , vol.34 , pp. 1385-1389
    • Bailey, V.L.1    Peacock, A.D.2    Smith, J.L.3    Bolton, H.4
  • 3
    • 32144447415 scopus 로고    scopus 로고
    • C-14 cycling in lignocellulose-amended soils: predicting long-term C fate from short-term indicators
    • Bailey V.L., Smith J.L., Bolton H. C-14 cycling in lignocellulose-amended soils: predicting long-term C fate from short-term indicators. Biology and Fertility of Soils 2006, 42:198-206.
    • (2006) Biology and Fertility of Soils , vol.42 , pp. 198-206
    • Bailey, V.L.1    Smith, J.L.2    Bolton, H.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Ser B 1995, 57:289-300.
    • (1995) Journal of the Royal Statistical Society Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 0037316625 scopus 로고    scopus 로고
    • Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes
    • Call D.R., Borucki M.K., Besser T.E. Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes. Journal of Clinical Microbiology 2003, 41:632-639.
    • (2003) Journal of Clinical Microbiology , vol.41 , pp. 632-639
    • Call, D.R.1    Borucki, M.K.2    Besser, T.E.3
  • 10
    • 2442659512 scopus 로고    scopus 로고
    • Automated purification and suspension array detection of 16S rRNA from soil and sediment extracts by using tunable surface microparticles
    • Chandler D.P., Jarrell A.E. Automated purification and suspension array detection of 16S rRNA from soil and sediment extracts by using tunable surface microparticles. Applied and Environmental Microbiology 2004, 70:2621-2631.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 2621-2631
    • Chandler, D.P.1    Jarrell, A.E.2
  • 15
    • 4444364240 scopus 로고    scopus 로고
    • Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts
    • Larrondo L.F., Gonzalez B., Cullen D., Vicuna R. Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts. Microbiology 2004, 150:2775-2783.
    • (2004) Microbiology , vol.150 , pp. 2775-2783
    • Larrondo, L.F.1    Gonzalez, B.2    Cullen, D.3    Vicuna, R.4
  • 16
    • 0242317346 scopus 로고    scopus 로고
    • Fundamentals of cDNA microarray data analysis
    • Leung Y.F., Cavalieri D. Fundamentals of cDNA microarray data analysis. Trends in Genetics 2003, 19:649-659.
    • (2003) Trends in Genetics , vol.19 , pp. 649-659
    • Leung, Y.F.1    Cavalieri, D.2
  • 17
    • 0037225001 scopus 로고    scopus 로고
    • Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
    • Lueders T., Friedrich M.W. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Applied and Environmental Microbiology 2003, 69:320-326.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 320-326
    • Lueders, T.1    Friedrich, M.W.2
  • 18
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • Pan W. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics 2002, 18:546-554.
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 19
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nature Genetics Supplement 2002, 32:496-501.
    • (2002) Nature Genetics Supplement , vol.32 , pp. 496-501
    • Quackenbush, J.1
  • 25
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
    • Wintzingerode F.V., Gobel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiology Reviews 1997, 21:213-229.
    • (1997) FEMS Microbiology Reviews , vol.21 , pp. 213-229
    • Wintzingerode, F.V.1    Gobel, U.B.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.