-
1
-
-
33645560786
-
Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models
-
Archer K.J., Dumur C.I., Joel S.E., Ramakrishnan V. Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models. Biostatistics 2006, 7:198-202.
-
(2006)
Biostatistics
, vol.7
, pp. 198-202
-
-
Archer, K.J.1
Dumur, C.I.2
Joel, S.E.3
Ramakrishnan, V.4
-
2
-
-
0345257783
-
Chipping away at the chip bias: RNA degradation in microarray analysis
-
Auer H., Lyianarachchi S., Newsom D., Klisovic M.I., Marcucci G., Kornacker K. Chipping away at the chip bias: RNA degradation in microarray analysis. Nature Genetics 2003, 35:292-293.
-
(2003)
Nature Genetics
, vol.35
, pp. 292-293
-
-
Auer, H.1
Lyianarachchi, S.2
Newsom, D.3
Klisovic, M.I.4
Marcucci, G.5
Kornacker, K.6
-
3
-
-
38949143604
-
Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues
-
Bahar B., Monahan F.J., Moloney A.P., Schmidt O., MacHugh D.E., Sweeney T. Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues. BMC Molecular Biology 2007, 8:108.
-
(2007)
BMC Molecular Biology
, vol.8
, pp. 108
-
-
Bahar, B.1
Monahan, F.J.2
Moloney, A.P.3
Schmidt, O.4
MacHugh, D.E.5
Sweeney, T.6
-
4
-
-
0242490216
-
Quantification of mRNA degradation as possible indicator of postmortem interval - A pilot study
-
Bauer M., Gramlich I., Polzin S., Patzelt D. Quantification of mRNA degradation as possible indicator of postmortem interval - A pilot study. Legal Medicine 2003, 5:220-227.
-
(2003)
Legal Medicine
, vol.5
, pp. 220-227
-
-
Bauer, M.1
Gramlich, I.2
Polzin, S.3
Patzelt, D.4
-
5
-
-
12244253042
-
Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction
-
Byrne K.A., Wang Y.H., Lehnert S.A., Harper G.S., McWilliam S.M., Bruce H.L., et al. Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction. Journal of Animal Science 2005, 83:1-12.
-
(2005)
Journal of Animal Science
, vol.83
, pp. 1-12
-
-
Byrne, K.A.1
Wang, Y.H.2
Lehnert, S.A.3
Harper, G.S.4
McWilliam, S.M.5
Bruce, H.L.6
-
6
-
-
77953308695
-
Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits
-
Cánovas A., Quintanilla R., Amills M., Pena R.N. Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits. BMC Genomics 2010, 11:372.
-
(2010)
BMC Genomics
, vol.11
, pp. 372
-
-
Cánovas, A.1
Quintanilla, R.2
Amills, M.3
Pena, R.N.4
-
7
-
-
23744462814
-
A microarray study of post-mortem mRNA degradation in mouse brain tissue
-
Catts V.S., Catts S.V., Fernandez H.R., Taylor J.M., Coulson E.J., Lutze-Mann L.H. A microarray study of post-mortem mRNA degradation in mouse brain tissue. Molecular Brain Research 2005, 138:164-177.
-
(2005)
Molecular Brain Research
, vol.138
, pp. 164-177
-
-
Catts, V.S.1
Catts, S.V.2
Fernandez, H.R.3
Taylor, J.M.4
Coulson, E.J.5
Lutze-Mann, L.H.6
-
8
-
-
38549171520
-
Assessing RNA quality in postmortem human brain tissue
-
Chevyreva I., Faull R.L., Green C.R., Nicholson L.F. Assessing RNA quality in postmortem human brain tissue. Experimental and Molecular Pathology 2008, 84:71-77.
-
(2008)
Experimental and Molecular Pathology
, vol.84
, pp. 71-77
-
-
Chevyreva, I.1
Faull, R.L.2
Green, C.R.3
Nicholson, L.F.4
-
9
-
-
33845600784
-
Impact of RNA degradation on gene expression profiles: Assessment of different methods to reliably determine RNA quality
-
Copois V., Bibeau F., Bascoul-Mollevi C., Salvetat N., Chalbos P., Bareil C., et al. Impact of RNA degradation on gene expression profiles: Assessment of different methods to reliably determine RNA quality. Journal of Biotechnology 2007, 127:549-559.
-
(2007)
Journal of Biotechnology
, vol.127
, pp. 549-559
-
-
Copois, V.1
Bibeau, F.2
Bascoul-Mollevi, C.3
Salvetat, N.4
Chalbos, P.5
Bareil, C.6
-
10
-
-
0041856154
-
Genomic approaches to economic trait loci and tissue expression profiling: application to muscle biochemistry and beef quality
-
Eggen A., Hocquette J.F. Genomic approaches to economic trait loci and tissue expression profiling: application to muscle biochemistry and beef quality. Meat Science 2004, 66:1-9.
-
(2004)
Meat Science
, vol.66
, pp. 1-9
-
-
Eggen, A.1
Hocquette, J.F.2
-
11
-
-
37349049648
-
Postmortem delay has minimal effect on brain RNA integrity
-
Ervin J.F., Heinzen E.L., Cronin K.D., Goldstein D., Szymanski M.H., Burke J.R., et al. Postmortem delay has minimal effect on brain RNA integrity. Journal of Neuropathology and Experimental Neurology 2007, 66(12):1093-1099.
-
(2007)
Journal of Neuropathology and Experimental Neurology
, vol.66
, Issue.12
, pp. 1093-1099
-
-
Ervin, J.F.1
Heinzen, E.L.2
Cronin, K.D.3
Goldstein, D.4
Szymanski, M.H.5
Burke, J.R.6
-
12
-
-
0023595211
-
Stability of protein and mRNA in human postmortem liver: analysis by two-dimensional gel electrophoresis
-
Finger J.M., Mercer J.F., Cotton R.G., Danks D.M. Stability of protein and mRNA in human postmortem liver: analysis by two-dimensional gel electrophoresis. Clinica Chimica Acta 1987, 170:209-218.
-
(1987)
Clinica Chimica Acta
, vol.170
, pp. 209-218
-
-
Finger, J.M.1
Mercer, J.F.2
Cotton, R.G.3
Danks, D.M.4
-
13
-
-
0037138807
-
Postmortem stability of RNA isolated from bovine reproductive tissues
-
Fitzpatrick R., Casey O.M., Morris D., Smith T., Powell R., Sreenan J.M. Postmortem stability of RNA isolated from bovine reproductive tissues. Biochimica et Biophisica Acta 2002, 1574:10-14.
-
(2002)
Biochimica et Biophisica Acta
, vol.1574
, pp. 10-14
-
-
Fitzpatrick, R.1
Casey, O.M.2
Morris, D.3
Smith, T.4
Powell, R.5
Sreenan, J.M.6
-
14
-
-
52049111203
-
Evaluation of post mortem stability of porcine skeletal muscle RNA
-
Fontanesi L., Colombo M., Beretti F., Russo V. Evaluation of post mortem stability of porcine skeletal muscle RNA. Meat Science 2008, 80:1345-1351.
-
(2008)
Meat Science
, vol.80
, pp. 1345-1351
-
-
Fontanesi, L.1
Colombo, M.2
Beretti, F.3
Russo, V.4
-
15
-
-
1342288026
-
Affy - analysis of Affymetrix GeneChip data at the probe level
-
Gautier L., Cope L., Bolstad B.M., Irizarry R.A. Affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20:307-315.
-
(2004)
Bioinformatics
, vol.20
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
16
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 2004, 5:R80.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
-
17
-
-
33645756545
-
-
Springer, New York
-
Gentleman R.C., Carey V.J., Huber W., Irizarry R.A., Dudoit S. Bioinformatics and computational biology solutions using R and Bioconductor 2005, Springer, New York.
-
(2005)
Bioinformatics and computational biology solutions using R and Bioconductor
-
-
Gentleman, R.C.1
Carey, V.J.2
Huber, W.3
Irizarry, R.A.4
Dudoit, S.5
-
18
-
-
33846931145
-
Successful RNA extraction from various human post-mortem tissues
-
Heinrich M., Matt K., Lutz-Bonengel S., Schmidt U. Successful RNA extraction from various human post-mortem tissues. International Journal of Legal Medicine 2007, 121:136-142.
-
(2007)
International Journal of Legal Medicine
, vol.121
, pp. 136-142
-
-
Heinrich, M.1
Matt, K.2
Lutz-Bonengel, S.3
Schmidt, U.4
-
19
-
-
0037021618
-
Degradation profile of mRNA in a dead rat body: basic semi-quantification study
-
Inoue H., Kimura A., Tuji T. Degradation profile of mRNA in a dead rat body: basic semi-quantification study. Forensic Science International 2002, 130:127-132.
-
(2002)
Forensic Science International
, vol.130
, pp. 127-132
-
-
Inoue, H.1
Kimura, A.2
Tuji, T.3
-
20
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry R.A., Hobbs B., Collin F., Beazer-Barclay Y.D., Antonellis K.J., Scherf U., et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
-
21
-
-
0036833462
-
Analysis of the molecular quality of human tissues: an experience from the cooperative human tissue network
-
Jewell S.D., Srinivasan M., McCart L.M., Williams N., Crizzle W.H., LiVolsi V., et al. Analysis of the molecular quality of human tissues: an experience from the cooperative human tissue network. Anatomic Pathology 2002, 118:733-741.
-
(2002)
Anatomic Pathology
, vol.118
, pp. 733-741
-
-
Jewell, S.D.1
Srinivasan, M.2
McCart, L.M.3
Williams, N.4
Crizzle, W.H.5
LiVolsi, V.6
-
23
-
-
33746690326
-
Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
-
Jones L., Goldstein D.R., Hughes G., Strand A.D., Collin F., Dunnett S.B., et al. Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data. BMC Bioinformatics 2006, 7:211.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 211
-
-
Jones, L.1
Goldstein, D.R.2
Hughes, G.3
Strand, A.D.4
Collin, F.5
Dunnett, S.B.6
-
24
-
-
1842483155
-
Nutritional genomics: the next frontier in the postgenomic era
-
Kaput J., Rodriguez R.L. Nutritional genomics: the next frontier in the postgenomic era. Physiological Genomics 2004, 16:166-177.
-
(2004)
Physiological Genomics
, vol.16
, pp. 166-177
-
-
Kaput, J.1
Rodriguez, R.L.2
-
25
-
-
63449111012
-
Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression
-
Li M., Reilly C. Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. Journal of Biomolecular Techniques 2008, 19:122-128.
-
(2008)
Journal of Biomolecular Techniques
, vol.19
, pp. 122-128
-
-
Li, M.1
Reilly, C.2
-
26
-
-
12144287672
-
Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions
-
Li J.Z., Vawter M.P., Walsh D.M., Tomita H., Evans S.J., Choudary P.V., et al. Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions. Human Molecular Genetics 2004, 13:609-616.
-
(2004)
Human Molecular Genetics
, vol.13
, pp. 609-616
-
-
Li, J.Z.1
Vawter, M.P.2
Walsh, D.M.3
Tomita, H.4
Evans, S.J.5
Choudary, P.V.6
-
27
-
-
0032472778
-
Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage
-
Marchuk L., Sciore P., Reno C., Frank C.B., Hart D.A. Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage. Biochimica et Biophisica Acta 1998, 1379:171-177.
-
(1998)
Biochimica et Biophisica Acta
, vol.1379
, pp. 171-177
-
-
Marchuk, L.1
Sciore, P.2
Reno, C.3
Frank, C.B.4
Hart, D.A.5
-
28
-
-
53749101270
-
Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets
-
Martínez-Montemayor M.M., Hill G.M., Raney N.E., Rilington V.D., Tempelman R.J., Link J.E., et al. Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets. BMC Genomics 2008, 9:421.
-
(2008)
BMC Genomics
, vol.9
, pp. 421
-
-
Martínez-Montemayor, M.M.1
Hill, G.M.2
Raney, N.E.3
Rilington, V.D.4
Tempelman, R.J.5
Link, J.E.6
-
29
-
-
1442356474
-
Altered mRNA abundance of ASB15 and four other genes in skeletal muscle following administration of beta-adrenergic receptor agonists
-
McDaneld T.G., Hancock D.L., Moody D.E. Altered mRNA abundance of ASB15 and four other genes in skeletal muscle following administration of beta-adrenergic receptor agonists. Physiological Genomics 2004, 16:275-283.
-
(2004)
Physiological Genomics
, vol.16
, pp. 275-283
-
-
McDaneld, T.G.1
Hancock, D.L.2
Moody, D.E.3
-
30
-
-
77955290840
-
Impact of RNA degradation on gene expression profiling
-
Opitz L., Salinas-Riester G., Grade M., Jung K., Jo P., Emons G., et al. Impact of RNA degradation on gene expression profiling. BMC Medical Genomics 2010, 3:36.
-
(2010)
BMC Medical Genomics
, vol.3
, pp. 36
-
-
Opitz, L.1
Salinas-Riester, G.2
Grade, M.3
Jung, K.4
Jo, P.5
Emons, G.6
-
31
-
-
51249085231
-
Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle
-
Ponsuksili S., Jonas E., Murani E., Phatsara C., Srikanchai T., Walz C., et al. Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. BMC Genomics 2008, 9:367.
-
(2008)
BMC Genomics
, vol.9
, pp. 367
-
-
Ponsuksili, S.1
Jonas, E.2
Murani, E.3
Phatsara, C.4
Srikanchai, T.5
Walz, C.6
-
32
-
-
41049086156
-
Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues
-
Popova T., Mennerich D., Weith A., Quast K. Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues. BMC Genomics 2008, 9:91.
-
(2008)
BMC Genomics
, vol.9
, pp. 91
-
-
Popova, T.1
Mennerich, D.2
Weith, A.3
Quast, K.4
-
33
-
-
34547208772
-
Effect of dietary phosphorus and its interaction with genetic background on global gene expression in porcine muscle
-
Qu A., Rothschild M.F., Stahl C.H. Effect of dietary phosphorus and its interaction with genetic background on global gene expression in porcine muscle. Journal of Animal Breeding and Genetics 2007, 124:214-224.
-
(2007)
Journal of Animal Breeding and Genetics
, vol.124
, pp. 214-224
-
-
Qu, A.1
Rothschild, M.F.2
Stahl, C.H.3
-
34
-
-
70549098725
-
Quality control in microarray assessment of gene expression in human airway epithelium
-
Raman T., O'Connor T.P., Hackett N.R., Wang W., Harvey B.G., Attiyeh M.A., et al. Quality control in microarray assessment of gene expression in human airway epithelium. BMC Genomics 2009, 10:493.
-
(2009)
BMC Genomics
, vol.10
, pp. 493
-
-
Raman, T.1
O'Connor, T.P.2
Hackett, N.R.3
Wang, W.4
Harvey, B.G.5
Attiyeh, M.A.6
-
35
-
-
33847034000
-
Gene expression profiling: insights into skeletal muscle growth and development
-
E. Suppl.
-
Reecy J.M., Spurlock D.M., Stahl C.H. Gene expression profiling: insights into skeletal muscle growth and development. Journal of Animal Science 2006, 84:E150-E154. (E. Suppl.).
-
(2006)
Journal of Animal Science
, vol.84
-
-
Reecy, J.M.1
Spurlock, D.M.2
Stahl, C.H.3
-
36
-
-
1442331944
-
Transcriptional profile of postmortem skeletal muscle
-
Sanoudou D., Kang P.B., Haslett J.N., Han M., Kunkel L.M., Beggs A.H. Transcriptional profile of postmortem skeletal muscle. Physiological Genomics 2004, 16:222-228.
-
(2004)
Physiological Genomics
, vol.16
, pp. 222-228
-
-
Sanoudou, D.1
Kang, P.B.2
Haslett, J.N.3
Han, M.4
Kunkel, L.M.5
Beggs, A.H.6
-
37
-
-
33751181235
-
Human postmortem tissue: what quality markers matter?
-
Stan A.D., Ghose S., Gao X.M., Roberts R.C., Lewis-Amezcua K., Hatanpaa K.J., et al. Human postmortem tissue: what quality markers matter?. Brain Research 2006, 1123:1-11.
-
(2006)
Brain Research
, vol.1123
, pp. 1-11
-
-
Stan, A.D.1
Ghose, S.2
Gao, X.M.3
Roberts, R.C.4
Lewis-Amezcua, K.5
Hatanpaa, K.J.6
-
38
-
-
24644519314
-
Significance analysis of time course microarray experiments
-
Storey J.D., Xiao W., Leek J., Tompkins R.G., Davies R.W. Significance analysis of time course microarray experiments. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:12837-12842.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 12837-12842
-
-
Storey, J.D.1
Xiao, W.2
Leek, J.3
Tompkins, R.G.4
Davies, R.W.5
-
39
-
-
36348997057
-
Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
-
Thompson K.L., Pine P.S., Rosenzweig B.A., Turpaz Y., Retief J. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. BMC Biotechnology 2007, 7:57.
-
(2007)
BMC Biotechnology
, vol.7
, pp. 57
-
-
Thompson, K.L.1
Pine, P.S.2
Rosenzweig, B.A.3
Turpaz, Y.4
Retief, J.5
-
40
-
-
77953956761
-
Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs
-
Wimmers K., Murani E., Ponsuksili S. Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs. Briefings in Functional Genomics 2010, 9:251-258.
-
(2010)
Briefings in Functional Genomics
, vol.9
, pp. 251-258
-
-
Wimmers, K.1
Murani, E.2
Ponsuksili, S.3
-
41
-
-
38949195745
-
Differential gene expression profile in pig adipose tissue treated with/without clenbuterol
-
Zhang J., He Q., Liu Q.Y., Guo W., Deng X.M., Zhang W.W., et al. Differential gene expression profile in pig adipose tissue treated with/without clenbuterol. BMC Genomics 2007, 8:433.
-
(2007)
BMC Genomics
, vol.8
, pp. 433
-
-
Zhang, J.1
He, Q.2
Liu, Q.Y.3
Guo, W.4
Deng, X.M.5
Zhang, W.W.6
|