Effect of dietary phosphorus and its interaction with genetic background on global gene expression in porcine muscle

Journal of Animal Breeding and Genetics

Volumn 124, Issue 4, 2007, Pages 214-224

  Qu, A ^a   Rothschild, M F ^a   Stahl, C H ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Gene expression; Microarray; Muscle; Phosphorus; Pig

Indexed keywords

ENZYME; PHOSPHORUS; RNA;

ANIMAL; ANIMAL FOOD; ARTICLE; COST; DIET; DIET SUPPLEMENTATION; DNA MICROARRAY; DRUG EFFECT; ECONOMICS; GENE EXPRESSION; GENETICS; ISOLATION AND PURIFICATION; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SKELETAL MUSCLE; SWINE;

ANIMAL FEED; ANIMALS; COSTS AND COST ANALYSIS; DIET; DIETARY SUPPLEMENTS; ENZYMES; GENE EXPRESSION; MUSCLE, SKELETAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHORUS; POLYMERASE CHAIN REACTION; RNA; SWINE;

ANIMALIA; SUIDAE; SUS;

EID: 34547208772     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/j.1439-0388.2007.00655.x     Document Type: Article

References (31)

1. Afonson C.L., Piccone M.E., Zaffuto K.M., Neilan J., Kutish G.F., Lu Z., Balinsky C.A., Gibb T.R., Bean T.J., Zsak L., Rock D.L. (2004) African swine fever virus multigene family 360 and 530 genes affect host interferon response. J. Virol., 78, 1858 1864.
2. Bai Q., McGillivray C., da Costa N., Dornan S., Evans G. Stear M.J., Chang K.C. (2003) Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. BMC Genomics, 4, 8.
3. Besson P., Fernandez-Rachubinski F., Yang W., Fliegel L. (1998) Regulation of Na+/H+ exchanger gene expression: mitogenic stimulation increases NHE1 promoter activity. Am. J. Physiol., 274, C831 C839.
4. Carter S.D., Cromwell G.L. (1998) Influence of porcine somatotropin on the phosphorus requirement of finishing pigs: I. Performance and bone characteristics. J. Anim. Sci., 76, 584 595.
5. Cleveland W.S. (1979) Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc., 74, 829 836.
6. Da Costa N., McGillivray C., Bai Q., Wood J.D., Evans G., Chang K.C. (2004) Restriction of dietary energy and protein induces molecular changes in young porcine skeletal muscles. J. Nutr., 134, 2191 2199.
7. Denker S.P., Huang D.C., Orlowski J., Furthmayr H., Barber D.L. (2000) Direct binding of the Na-H exchanger NHE1 to ERM proteins regulates the cortical cytoskeleton and cell shape independently of H+ translocation. Mol. Cell, 6, 1425 1436.
8. Harper A.E., Miller R.H., Block K.P. (1984) Branched-chain amino acid metabolism. Annu. Rev. Nutr., 4, 409 454.
9. Harris R.A., Joshi M., Jeoung N.H. (2004) Mechanisms responsible for regulation of branched-chain amino acid catabolism. Biochem. Biophys. Res. Commun., 313, 391 396.
10. Hastad C.W., Dritz S.S., Tokach M.D., Goodband R.D., Nelssen J.L., DeRouchey J.M., Boyd R.D., Johnston M.E. (2004) Phosphorus requirements of growing-finishing pigs reared in a commercial environment. J. Anim. Sci., 82, 2945 2952.
11. Hittmeier L.J., Grapes L., Lensing R.L., Rothschild M.F., Stahl C.H. (2006) Genetic background influences metabolic responses to dietary phosphorus restriction. J. Nutr. Biochem., 17, 285 295.
12. Ji W., Zhou W.L., Gregg K., Yu N., Davis S. (2004) A method for cross-species gene expression analysis with high-density oligonucleotide arrays. Nucleic Acids Res., 32, e93.
13. Kim S.G., Sohn I., Ahn J.I., Lee K.H., Lee Y.S., Lee Y.S. (2004) Hepatic gene expression profiles in a long-term high-fat diet-induced obesity mouse model. Gene, 340, 99 109.
14. Knowlton K.F., Radcliffe J.S., Novak C.L., Emmerson D.A. (2004) Animal management to reduce phosphorus losses to the environment. J. Anim. Sci., 82, 173 195.
15. Ledger T.N., Pinton P., Bourges D., Roumi P., Salmon H., Oswald I.P. (2004) Development of a macroarray to specifically analyze immunological gene expression in swine. Clin. Diagn. Lab. Immunol., 11, 691 698.
16. Lei X.G., Ku P.K., Miller E.R., Yokoyama M.T., Ullrey D.E. (1993) Supplementing corn soybean meal diets with microbial phytase maximizes phytate phosphorus utilization by weanling pigs. J. Anim. Sci., 71, 3368 3375.
17. Livak K.J., Schmittgen T.D. (2001) Analysis of relative gene expression data using real- time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods, 25, 402 408.
18. Moody D.E., Zou Z., McIntyre L. (2002) Cross-species hybridization of pig RNA to human nylon microarrays. BMC Genomics, 3, 27.
19. Moser R.J., Reverter A., Kerr C.A., Beh K.J., Lehnert S.A. (2004) A mixed-model approach for the analysis of cDNA microarrays gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae. J. Anim. Sci., 82, 1261 1271.
20. Nadon R., Shoemaker J. (2002) Statistical issues with microarrays: processing and analysis. Trends Genet., 18, 265 271.
21. NRC (1998) Nutrient Requirement of Swine (10th Edn). National Academy Press, Washington, DC.
22. Radcliffe J.S., Zhang Z., Kornegay E.T. (1998) The effect of microbial phytase, citric aid, and their interaction in a corn-soybean meal-based diet for weaning pigs. J. Anim. Sci., 76, 1880 1886.
23. Rao G.N., de Roux N., Sardet C., Pouyssegur J., Berk B.C. (1991) Na+/H+ antiporter gene expression increases during monocytic differentiation of HL60 cells. J. Biol. Chem., 266, 13485 13488.
24. Rao G.N., Sardet C., Pouyssegur J., Berk B.C. (1992) Na+/H+ antiporter gene expression increases during retinoic acid-induced granulocytic differentiation of HL60 cells. J. Cell Physiol., 151, 361 366.
25. Riond J.L., Wanner M., Coste H., Parvu G. (2001) Pathophysiological effects of low dietary phosphorus in pigs. Vet. J., 161, 165 173.
26. Sreekumar R., Unnikrishnan J., Fu A., Nygren J., Short K.R., Schimke J., Barazzoni R., Nair K.S. (2002) Effects of caloric restriction on mitochondrial function and gene transcripts in rat muscle. Am. J. Physiol. Endocrinol. Metab., 283, E38 E43.
27. Stahl C.H., Roneker K.R., Pond W.G., Lei X.G. (2004) Effects of combining three fungal phytases with a bacterial phytase on plasma phosphorus status of weanling pigs fed a corn-soy diet. J. Anim. Sci., 82, 1725 1731.
28. Traylor S.L., Cromwell G.L., Lindemann M.D. (2005) Bioavailability of phosphorus in meat and bone meal for swine. J. Anim. Sci., 83, 1054 1061.
29. Wolfinger R.D., Gibson G., Wolfinger E.D., Bennett L., Hamadeh H., Bushel P., et al. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol., 8, 625 637.
30. Zhang M.Y.H., Wang X., Wang J.T., Compagnone N.A., Mellon S.H., Olson J.L., Tenenhouse H.S., Miller W.L., Portale A.A. (2002) Dietary phosphorus transcriptionally regulates 25-hydroxyvitamin D-1-hydroxylase gene expression in the proximal renal tubule. Endocrinology, 143, 587 595.
31. Zhao S.H., Recknor J., Lunney J.K., Nettleton D., Kuhar D., Orley S., Tuggle C.K. (2005) Validation of a first generation long-Oligonucleotide micro array for transcriptional profiling in the pig. Genomics, 86, 618 625.