-
1
-
-
0345257783
-
Chipping away at the chip bias: RNA degradation in microarray analysis
-
Auer H., Lyianarachchi S., Newsom D., Klisovic M.I., Marcucci G., and Kornacker K. Chipping away at the chip bias: RNA degradation in microarray analysis. Nature Genetics 35 (2003) 292-293
-
(2003)
Nature Genetics
, vol.35
, pp. 292-293
-
-
Auer, H.1
Lyianarachchi, S.2
Newsom, D.3
Klisovic, M.I.4
Marcucci, G.5
Kornacker, K.6
-
2
-
-
38949143604
-
Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues
-
Bahar B., Monahan F.J., Moloney A.P., Schmidt O., MacHugh D.E., and Sweeney T. Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues. BMC Molecular Biology 8 (2007) 108
-
(2007)
BMC Molecular Biology
, vol.8
, pp. 108
-
-
Bahar, B.1
Monahan, F.J.2
Moloney, A.P.3
Schmidt, O.4
MacHugh, D.E.5
Sweeney, T.6
-
4
-
-
0242490216
-
Quantification of mRNA degradation as possible indicator of postmortem interval - A pilot study
-
Bauer M., Gramlich I., Polzin S., and Patzelt D. Quantification of mRNA degradation as possible indicator of postmortem interval - A pilot study. Legal Medicine 5 (2003) 220-227
-
(2003)
Legal Medicine
, vol.5
, pp. 220-227
-
-
Bauer, M.1
Gramlich, I.2
Polzin, S.3
Patzelt, D.4
-
5
-
-
22144489165
-
The use of proteomics in meat science
-
Bendixen E. The use of proteomics in meat science. Meat Science 71 (2005) 138-149
-
(2005)
Meat Science
, vol.71
, pp. 138-149
-
-
Bendixen, E.1
-
6
-
-
14044265394
-
Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction
-
Bustin S.A., and Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. Journal of Biomolecular Techniques 15 (2004) 155-166
-
(2004)
Journal of Biomolecular Techniques
, vol.15
, pp. 155-166
-
-
Bustin, S.A.1
Nolan, T.2
-
7
-
-
12244253042
-
Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction
-
Byrne K.A., Wang Y.H., Lehnert S.A., Harper G.S., McWilliam S.M., Bruce H.L., et al. Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction. Journal of Animal Science 83 (2005) 1-12
-
(2005)
Journal of Animal Science
, vol.83
, pp. 1-12
-
-
Byrne, K.A.1
Wang, Y.H.2
Lehnert, S.A.3
Harper, G.S.4
McWilliam, S.M.5
Bruce, H.L.6
-
8
-
-
23744462814
-
A microarray study of post-mortem mRNA degradation in mouse brain tissue
-
Catts V.S., Catts S.V., Fernandez H.R., Taylor J.M., Coulson E.J., and Lutze-Mann L.H. A microarray study of post-mortem mRNA degradation in mouse brain tissue. Molecular Brain Research 138 (2005) 164-177
-
(2005)
Molecular Brain Research
, vol.138
, pp. 164-177
-
-
Catts, V.S.1
Catts, S.V.2
Fernandez, H.R.3
Taylor, J.M.4
Coulson, E.J.5
Lutze-Mann, L.H.6
-
10
-
-
33845600784
-
Impact of RNA degradation on gene expression profiles: Assessment of different methods to reliably determine RNA quality
-
Copois V., Bibeau F., Bascoul-Mollevi C., Salvetat N., Chalbos P., Bareil C., et al. Impact of RNA degradation on gene expression profiles: Assessment of different methods to reliably determine RNA quality. Journal of Biotechnology 127 (2007) 549-559
-
(2007)
Journal of Biotechnology
, vol.127
, pp. 549-559
-
-
Copois, V.1
Bibeau, F.2
Bascoul-Mollevi, C.3
Salvetat, N.4
Chalbos, P.5
Bareil, C.6
-
11
-
-
0035171691
-
Recovery and expression of messenger RNA from post-mortem human brain tissue
-
Cummings T.J., Strum J.C., Yoon L.W., Szymanski M.H., and Hulette C.M. Recovery and expression of messenger RNA from post-mortem human brain tissue. Methods in Pathology 14 (2001) 1157-1161
-
(2001)
Methods in Pathology
, vol.14
, pp. 1157-1161
-
-
Cummings, T.J.1
Strum, J.C.2
Yoon, L.W.3
Szymanski, M.H.4
Hulette, C.M.5
-
12
-
-
0036707754
-
Postmortem RNA and protein stability in perinatal human lungs
-
De Paepe M.E., Mao Q., Huang C., Zhu D., Jackson C.L., and Hansen K. Postmortem RNA and protein stability in perinatal human lungs. Diagnostic Molecular Pathology 11 (2002) 170-176
-
(2002)
Diagnostic Molecular Pathology
, vol.11
, pp. 170-176
-
-
De Paepe, M.E.1
Mao, Q.2
Huang, C.3
Zhu, D.4
Jackson, C.L.5
Hansen, K.6
-
13
-
-
0036883882
-
Degradation of cellular mRNA is a general early apoptosis-induced event
-
Del Prete M.J., Robles M.S., Guáo A., Martínez-A C., Izquierdo M., and Garcia-Sanz J.A. Degradation of cellular mRNA is a general early apoptosis-induced event. FASEB Journal 16 (2002) 2003-2005
-
(2002)
FASEB Journal
, vol.16
, pp. 2003-2005
-
-
Del Prete, M.J.1
Robles, M.S.2
Guáo, A.3
Martínez-A, C.4
Izquierdo, M.5
Garcia-Sanz, J.A.6
-
14
-
-
0041856154
-
Genomic approaches to economic trait loci and tissue expression profiling: Application to muscle biochemistry and beef quality
-
Eggen A., and Hocquette J.F. Genomic approaches to economic trait loci and tissue expression profiling: Application to muscle biochemistry and beef quality. Meat Science 66 (2004) 1-9
-
(2004)
Meat Science
, vol.66
, pp. 1-9
-
-
Eggen, A.1
Hocquette, J.F.2
-
15
-
-
37349049648
-
Postmortem delay has minimal effect on brain RNA integrity
-
Ervin J.F., Heinzen E.L., Cronin K.D., Goldstein D., Szymanski M.H., Burke J.R., et al. Postmortem delay has minimal effect on brain RNA integrity. Journal of Neuropathology and Experimental Neurology 66 12 (2007) 1093-1099
-
(2007)
Journal of Neuropathology and Experimental Neurology
, vol.66
, Issue.12
, pp. 1093-1099
-
-
Ervin, J.F.1
Heinzen, E.L.2
Cronin, K.D.3
Goldstein, D.4
Szymanski, M.H.5
Burke, J.R.6
-
17
-
-
0023595211
-
Stability of protein and mRNA in human postmortem liver: Analysis by two-dimensional gel electrophoresis
-
Finger J.M., Mercer J.F., Cotton R.G., and Danks D.M. Stability of protein and mRNA in human postmortem liver: Analysis by two-dimensional gel electrophoresis. Clinica Chimica Acta 170 (1987) 209-218
-
(1987)
Clinica Chimica Acta
, vol.170
, pp. 209-218
-
-
Finger, J.M.1
Mercer, J.F.2
Cotton, R.G.3
Danks, D.M.4
-
18
-
-
0037138807
-
Postmortem stability of RNA isolated from bovine reproductive tissues
-
Fitzpatrick R., Casey O.M., Morris D., Smith T., Powell R., and Sreenan J.M. Postmortem stability of RNA isolated from bovine reproductive tissues. Biochimica et Biophisica Acta 1574 (2002) 10-14
-
(2002)
Biochimica et Biophisica Acta
, vol.1574
, pp. 10-14
-
-
Fitzpatrick, R.1
Casey, O.M.2
Morris, D.3
Smith, T.4
Powell, R.5
Sreenan, J.M.6
-
19
-
-
33644975004
-
RNA integrity and the effect on the real-time qRT-PCR performance
-
Fleige S., and Pfaffl M.W. RNA integrity and the effect on the real-time qRT-PCR performance. Molecular Aspects of Medicine 27 (2006) 126-139
-
(2006)
Molecular Aspects of Medicine
, vol.27
, pp. 126-139
-
-
Fleige, S.1
Pfaffl, M.W.2
-
21
-
-
0028845078
-
The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins
-
Harrison P.J., Heath P.R., Eastwood S.L., Burnet P.W., McDonald B., and Pearson R.C. The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins. Neuroscience Letters 200 (1995) 151-154
-
(1995)
Neuroscience Letters
, vol.200
, pp. 151-154
-
-
Harrison, P.J.1
Heath, P.R.2
Eastwood, S.L.3
Burnet, P.W.4
McDonald, B.5
Pearson, R.C.6
-
23
-
-
34250634816
-
Application of proteomics to understand the molecular mechanism behind meat quality
-
Hollung K., Veiset E., Jia X., Færgested E.M., and Hildrum K.I. Application of proteomics to understand the molecular mechanism behind meat quality. Meat Science 77 (2007) 97-104
-
(2007)
Meat Science
, vol.77
, pp. 97-104
-
-
Hollung, K.1
Veiset, E.2
Jia, X.3
Færgested, E.M.4
Hildrum, K.I.5
-
25
-
-
28644452204
-
Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces
-
Imbeaud S., Graudens E., Boulanger V., Barlet X., Zaborski P., Eveno E., et al. Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces. Nucleic Acids Research 33 (2005) e56
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Imbeaud, S.1
Graudens, E.2
Boulanger, V.3
Barlet, X.4
Zaborski, P.5
Eveno, E.6
-
26
-
-
0037021618
-
Degradation profile of mRNA in a dead rat body: Basic semi-quantification study
-
Inoue H., Kimura A., and Tuji T. Degradation profile of mRNA in a dead rat body: Basic semi-quantification study. Forensic Science International 130 (2002) 127-132
-
(2002)
Forensic Science International
, vol.130
, pp. 127-132
-
-
Inoue, H.1
Kimura, A.2
Tuji, T.3
-
27
-
-
0036833462
-
Analysis of the molecular quality of human tissues: An experience from the cooperative human tissue network
-
Jewell S.D., Srinivasan M., McCart L.M., Williams N., Crizzle W.H., LiVolsi V., et al. Analysis of the molecular quality of human tissues: An experience from the cooperative human tissue network. Anatomic Pathology 118 (2002) 733-741
-
(2002)
Anatomic Pathology
, vol.118
, pp. 733-741
-
-
Jewell, S.D.1
Srinivasan, M.2
McCart, L.M.3
Williams, N.4
Crizzle, W.H.5
LiVolsi, V.6
-
29
-
-
1842483155
-
Nutritional genomics: The next frontier in the postgenomic era
-
Kaput J., and Rodriguez R.L. Nutritional genomics: The next frontier in the postgenomic era. Physiological Genomics 16 (2004) 166-177
-
(2004)
Physiological Genomics
, vol.16
, pp. 166-177
-
-
Kaput, J.1
Rodriguez, R.L.2
-
30
-
-
0028812040
-
Tissue pH as an indicator of mRNA preservation in human post-mortem brain
-
Kingsbury A.E., Foster O.J., Nisbet A.P., Cairns N., Bray L., Eve D.J., et al. Tissue pH as an indicator of mRNA preservation in human post-mortem brain. Molecular Brain Research 28 (1995) 311-318
-
(1995)
Molecular Brain Research
, vol.28
, pp. 311-318
-
-
Kingsbury, A.E.1
Foster, O.J.2
Nisbet, A.P.3
Cairns, N.4
Bray, L.5
Eve, D.J.6
-
31
-
-
18844406575
-
Stability of RNA isolated from human trabecular bone at post-mortem and surgery
-
Kuliwaba J.S., Fazzalari N.L., and Findlay D.M. Stability of RNA isolated from human trabecular bone at post-mortem and surgery. Biochimica et Biophysica Acta 1740 (2005) 1-11
-
(2005)
Biochimica et Biophysica Acta
, vol.1740
, pp. 1-11
-
-
Kuliwaba, J.S.1
Fazzalari, N.L.2
Findlay, D.M.3
-
32
-
-
0034769635
-
Proteome analysis applied to meat science: Characterizing postmortem changes in porcine muscle
-
Lametsch R., and Bendixen E. Proteome analysis applied to meat science: Characterizing postmortem changes in porcine muscle. Journal of Agricultural and Food Chemistry 49 (2001) 4531-4537
-
(2001)
Journal of Agricultural and Food Chemistry
, vol.49
, pp. 4531-4537
-
-
Lametsch, R.1
Bendixen, E.2
-
33
-
-
0004265561
-
-
Pergamon International Library, Oxford, UK
-
Lawrie R.A. Meat science. 4th ed. (1985), Pergamon International Library, Oxford, UK
-
(1985)
Meat science. 4th ed.
-
-
Lawrie, R.A.1
-
34
-
-
12144287672
-
Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions
-
Li J.Z., Vawter M.P., Walsh D.M., Tomita H., Evans S.J., Choudary P.V., et al. Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions. Human Molecular Genetics 13 (2004) 609-616
-
(2004)
Human Molecular Genetics
, vol.13
, pp. 609-616
-
-
Li, J.Z.1
Vawter, M.P.2
Walsh, D.M.3
Tomita, H.4
Evans, S.J.5
Choudary, P.V.6
-
35
-
-
0038147058
-
Stability of RNA from the retina and retinal pigment epithelium in a porcine model simulating human eye bank conditions
-
Malik K.J., Chen C., and Olsen T.W. Stability of RNA from the retina and retinal pigment epithelium in a porcine model simulating human eye bank conditions. Investigative Ophtalmology and Visual Science 44 (2003) 2730-2735
-
(2003)
Investigative Ophtalmology and Visual Science
, vol.44
, pp. 2730-2735
-
-
Malik, K.J.1
Chen, C.2
Olsen, T.W.3
-
36
-
-
0032472778
-
Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage
-
Marchuk L., Sciore P., Reno C., Frank C.B., and Hart D.A. Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage. Biochimica et Biophisica Acta 1379 (1998) 171-177
-
(1998)
Biochimica et Biophisica Acta
, vol.1379
, pp. 171-177
-
-
Marchuk, L.1
Sciore, P.2
Reno, C.3
Frank, C.B.4
Hart, D.A.5
-
37
-
-
1442356474
-
Altered mRNA abundance of ASB15 and four other genes in skeletal muscle following administration of beta-adrenergic receptor agonists
-
McDaneld T.G., Hancock D.L., and Moody D.E. Altered mRNA abundance of ASB15 and four other genes in skeletal muscle following administration of beta-adrenergic receptor agonists. Physiological Genomics 16 (2004) 275-283
-
(2004)
Physiological Genomics
, vol.16
, pp. 275-283
-
-
McDaneld, T.G.1
Hancock, D.L.2
Moody, D.E.3
-
38
-
-
33746720828
-
Brain pH has a significant impact on human postmortem hippocampal gene expression profiles
-
Mexal S., Berger R., Adams C.E., Ross R.G., Freedman R., and Leonard S. Brain pH has a significant impact on human postmortem hippocampal gene expression profiles. Brain Research 1106 (2006) 1-11
-
(2006)
Brain Research
, vol.1106
, pp. 1-11
-
-
Mexal, S.1
Berger, R.2
Adams, C.E.3
Ross, R.G.4
Freedman, R.5
Leonard, S.6
-
40
-
-
0033986177
-
A microfluidic system for high-speed reproducible DNA sizing and quantitation
-
Mueller O., Hahnenberger K., Dittmann M., Yee H., Dubrow R., Nagle R., and Ilsley D. A microfluidic system for high-speed reproducible DNA sizing and quantitation. Electrophoresis 21 (2000) 128-134
-
(2000)
Electrophoresis
, vol.21
, pp. 128-134
-
-
Mueller, O.1
Hahnenberger, K.2
Dittmann, M.3
Yee, H.4
Dubrow, R.5
Nagle, R.6
Ilsley, D.7
-
41
-
-
52049115986
-
-
Mueller, O., Lightfood, S., & Schroeder, A. (2004). RNA Integrity Number - Standardization of RNA quality control. Agilent Application Note, Publication No. 5989-1165EN.
-
Mueller, O., Lightfood, S., & Schroeder, A. (2004). RNA Integrity Number - Standardization of RNA quality control. Agilent Application Note, Publication No. 5989-1165EN.
-
-
-
-
42
-
-
34547208772
-
Effect of dietary phosphorus and its interaction with genetic background on global gene expression in porcine muscle
-
Qu A., Rothschild M.F., and Stahl C.H. Effect of dietary phosphorus and its interaction with genetic background on global gene expression in porcine muscle. Journal of Animal Breeding and Genetics 124 (2007) 214-224
-
(2007)
Journal of Animal Breeding and Genetics
, vol.124
, pp. 214-224
-
-
Qu, A.1
Rothschild, M.F.2
Stahl, C.H.3
-
43
-
-
33847034000
-
Gene expression profiling: Insights into skeletal muscle growth and development
-
Reecy J.M., Spurlock D.M., and Stahl C.H. Gene expression profiling: Insights into skeletal muscle growth and development. Journal of Animal Science 84 E. Suppl. (2006) E150-E154
-
(2006)
Journal of Animal Science
, vol.84
, Issue.E. SUPPL
-
-
Reecy, J.M.1
Spurlock, D.M.2
Stahl, C.H.3
-
44
-
-
0030921985
-
The ability to cleave 28S ribosomal RNA during apoptosis is a cell-type dependent trait unrelated to DNA fragmentation
-
Samali A., Gilje B., Døskeland S.O., Cotter T.G., and Houge G. The ability to cleave 28S ribosomal RNA during apoptosis is a cell-type dependent trait unrelated to DNA fragmentation. Cell Death and Differentiation 4 (1997) 289-293
-
(1997)
Cell Death and Differentiation
, vol.4
, pp. 289-293
-
-
Samali, A.1
Gilje, B.2
Døskeland, S.O.3
Cotter, T.G.4
Houge, G.5
-
46
-
-
1442331944
-
Transcriptional profile of postmortem skeletal muscle
-
Sanoudou D., Kang P.B., Haslett J.N., Han M., Kunkel L.M., and Beggs A.H. Transcriptional profile of postmortem skeletal muscle. Physiological Genomics 16 (2004) 222-228
-
(2004)
Physiological Genomics
, vol.16
, pp. 222-228
-
-
Sanoudou, D.1
Kang, P.B.2
Haslett, J.N.3
Han, M.4
Kunkel, L.M.5
Beggs, A.H.6
-
47
-
-
0345168051
-
Moderate degradation does not preclude microarray analysis of small amounts of RNA
-
Schoor O., Weinschenk T., Hennenlotter J., Corvin S., Stenzl A., Rammensee H.G., et al. Moderate degradation does not preclude microarray analysis of small amounts of RNA. Biotechniques 35 (2003) 1192-1201
-
(2003)
Biotechniques
, vol.35
, pp. 1192-1201
-
-
Schoor, O.1
Weinschenk, T.2
Hennenlotter, J.3
Corvin, S.4
Stenzl, A.5
Rammensee, H.G.6
-
48
-
-
0032917255
-
Stability of RNA transcripts in post-mortem psychiatric brain
-
Schramm M., Falkai P., Tepest R., Scheneider-Axmann T., Przkora R., Waha A., et al. Stability of RNA transcripts in post-mortem psychiatric brain. Journal of Neural Transmission 106 (1999) 329-335
-
(1999)
Journal of Neural Transmission
, vol.106
, pp. 329-335
-
-
Schramm, M.1
Falkai, P.2
Tepest, R.3
Scheneider-Axmann, T.4
Przkora, R.5
Waha, A.6
-
49
-
-
33645241407
-
The RIN: An RNA integrity number for assigning integrity values to RNA measurements
-
Schroeder A., Mueller O., Stocker S., Salowsky R., Leiber M., Gassmann M., et al. The RIN: An RNA integrity number for assigning integrity values to RNA measurements. BMC Molecular Biology 7 (2006) 3
-
(2006)
BMC Molecular Biology
, vol.7
, pp. 3
-
-
Schroeder, A.1
Mueller, O.2
Stocker, S.3
Salowsky, R.4
Leiber, M.5
Gassmann, M.6
-
50
-
-
33751181235
-
Human postmortem tissue: What quality markers matter?
-
Stan A.D., Ghose S., Gao X.M., Roberts R.C., Lewis-Amezcua K., Hatanpaa K.J., et al. Human postmortem tissue: What quality markers matter?. Brain Research 1123 (2006) 1-11
-
(2006)
Brain Research
, vol.1123
, pp. 1-11
-
-
Stan, A.D.1
Ghose, S.2
Gao, X.M.3
Roberts, R.C.4
Lewis-Amezcua, K.5
Hatanpaa, K.J.6
-
51
-
-
36348997057
-
Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
-
Thompson K.L., Pine P.S., Rosenzweig B.A., Turpaz Y., and Retief J. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. BMC Biotechnology 7 (2007) 57
-
(2007)
BMC Biotechnology
, vol.7
, pp. 57
-
-
Thompson, K.L.1
Pine, P.S.2
Rosenzweig, B.A.3
Turpaz, Y.4
Retief, J.5
-
52
-
-
34250670413
-
Identification of pork quality parameters by proteomics
-
van de Wiel D.F.M., and Zhang W.L. Identification of pork quality parameters by proteomics. Meat Science 77 (2007) 46-54
-
(2007)
Meat Science
, vol.77
, pp. 46-54
-
-
van de Wiel, D.F.M.1
Zhang, W.L.2
-
53
-
-
34748890531
-
Associations of functional candidate genes derived from gene-expression profiles of prenatal porcine muscle tissue with meat quality and muscle deposition
-
Wimmers K., Murani E., Te Pas M.F., Chang K.C., Davoli R., Merks J.W., et al. Associations of functional candidate genes derived from gene-expression profiles of prenatal porcine muscle tissue with meat quality and muscle deposition. Animal Genetics 38 (2007) 474-484
-
(2007)
Animal Genetics
, vol.38
, pp. 474-484
-
-
Wimmers, K.1
Murani, E.2
Te Pas, M.F.3
Chang, K.C.4
Davoli, R.5
Merks, J.W.6
-
54
-
-
0035217572
-
High stability of mRNAs postmortem and protocols for their assessment by RT-PCR
-
Yasojima K., McGeer E.G., and McGeer P.L. High stability of mRNAs postmortem and protocols for their assessment by RT-PCR. Brain Research Protocols 8 (2001) 212-218
-
(2001)
Brain Research Protocols
, vol.8
, pp. 212-218
-
-
Yasojima, K.1
McGeer, E.G.2
McGeer, P.L.3
-
55
-
-
38949195745
-
Differential gene expression profile in pig adipose tissue treated with/without clenbuterol
-
Zhang J., He Q., Liu Q.Y., Guo W., Deng X.M., Zhang W.W., et al. Differential gene expression profile in pig adipose tissue treated with/without clenbuterol. BMC Genomics 8 (2007) 433
-
(2007)
BMC Genomics
, vol.8
, pp. 433
-
-
Zhang, J.1
He, Q.2
Liu, Q.Y.3
Guo, W.4
Deng, X.M.5
Zhang, W.W.6
|