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Volumn 9, Issue , 2008, Pages

Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; ACTIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; RNA 18S; RNA 28S;

EID: 41049086156     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-91     Document Type: Article
Times cited : (64)

References (32)
  • 1
    • 3142721756 scopus 로고    scopus 로고
    • Expression profile analysis of neurodegenerative disease: Advances in specificity and resolution
    • 10.1023/B:NERE.0000023603.17615.8c 15176473
    • Glanzer JG Haydon PG Eberwine JH Expression profile analysis of neurodegenerative disease: Advances in specificity and resolution Neurochem Res 2004, 29:1161-8. 10.1023/B:NERE.0000023603.17615.8c 15176473
    • (2004) Neurochem Res , vol.29 , pp. 1161-1168
    • Glanzer, J.G.1    Haydon, P.G.2    Eberwine, J.H.3
  • 2
    • 0036807851 scopus 로고    scopus 로고
    • Gene expression profiling with DNA microarrays: Advancing our understanding of psychiatric disorders
    • 10.1023/A:1020904821237 12462404
    • Pongrac J Middleton FA Lewis DA Levitt P Mirnics K Gene expression profiling with DNA microarrays: Advancing our understanding of psychiatric disorders Neurochem Res 2000, 27(10):1049-63. 10.1023/ A:1020904821237 12462404
    • (2000) Neurochem Res , vol.27 , Issue.10 , pp. 1049-1063
    • Pongrac, J.1    Middleton, F.A.2    Lewis, D.A.3    Levitt, P.4    Mirnics, K.5
  • 4
    • 0038206578 scopus 로고    scopus 로고
    • Gene microarrays in hippocampal aging: Statistical profiling identifies novel processes correlated with cognitive impairment
    • 12736351
    • Blalock EM Chen KC Sharrow K Herman JP Porter NM Foster TC Landfield PW Gene microarrays in hippocampal aging: Statistical profiling identifies novel processes correlated with cognitive impairment J Neurosci 2003, 23(9):3807-19. 12736351
    • (2003) J Neurosci , vol.23 , Issue.9 , pp. 3807-3819
    • Blalock, E.M.1    Chen, K.C.2    Sharrow, K.3    Herman, J.P.4    Porter, N.M.5    Foster, T.C.6    Landfield, P.W.7
  • 6
    • 33745698337 scopus 로고    scopus 로고
    • Critical appraisal of DNA microarrays in psychiatric genomics
    • Epub 2006 Apr 17. 16616896
    • Mirnics K Levitt P Lewis DA Critical appraisal of DNA microarrays in psychiatric genomics Psychiatry 2006, 60(2):163-76. Epub 2006 Apr 17. 16616896
    • (2006) Psychiatry , vol.60 , Issue.2 , pp. 163-176
    • Mirnics, K.1    Levitt, P.2    Lewis, D.A.3
  • 7
    • 0036146670 scopus 로고    scopus 로고
    • The human brain revisited: Opportunities and challenges in post-mortem studies of psychiatric disorders
    • 10.1016/S0893-133X(01)00393-1 11790510
    • Lewis DA The human brain revisited: Opportunities and challenges in post-mortem studies of psychiatric disorders Neuropsychopharmacology 2002, 26(2):143-54. 10.1016/S0893-133X(01)00393-1 11790510
    • (2002) Neuropsychopharmacology , vol.26 , Issue.2 , pp. 143-154
    • Lewis, D.A.1
  • 8
    • 0035222137 scopus 로고    scopus 로고
    • Expressing what's on your mind: DNA arrays and the brain
    • 10.1038/35049070 11253360
    • Lockhart DJ Barlow C Expressing what's on your mind: DNA arrays and the brain Nat Rev Neurosci 2001, 2(1):63-8. 10.1038/35049070 11253360
    • (2001) Nat Rev Neurosci , vol.2 , Issue.1 , pp. 63-68
    • Lockhart, D.J.1    Barlow, C.2
  • 9
    • 0037207069 scopus 로고    scopus 로고
    • Gene expression profiling: Methodological challenges, results, and prospects for addiction research
    • 10.1016/S0009-3084(02)00160-3 12505704
    • Pollock JD Gene expression profiling: Methodological challenges, results, and prospects for addiction research Chem Phys Lipids 2002, 121(1-2):241-56. 10.1016/S0009-3084(02)00160-3 12505704
    • (2002) Chem Phys Lipids , vol.121 , Issue.1-2 , pp. 241-256
    • Pollock, J.D.1
  • 10
  • 11
    • 27844592179 scopus 로고    scopus 로고
    • A microarray data analysis framework for post-mortem tissues
    • 10.1016/j.ymeth.2005.09.006 16308154
    • Jackson ES Wayland MT Fitzgerald W Bahn S A microarray data analysis framework for post-mortem tissues Methods 2005, 37(3):247-260. 10.1016/ j.ymeth.2005.09.006 16308154
    • (2005) Methods , vol.37 , Issue.3 , pp. 247-260
    • Jackson, E.S.1    Wayland, M.T.2    Fitzgerald, W.3    Bahn, S.4
  • 13
    • 2142757232 scopus 로고    scopus 로고
    • Progress in the use of microarray technology to study the neurobiology of disease
    • 10.1038/nn1230 15114354
    • Mirnics K Pevzner J Progress in the use of microarray technology to study the neurobiology of disease Nat Neurosci 2004, 7(5):434-9. 10.1038/ nn1230 15114354
    • (2004) Nat Neurosci , vol.7 , Issue.5 , pp. 434-439
    • Mirnics, K.1    Pevzner, J.2
  • 14
    • 16544381445 scopus 로고    scopus 로고
    • DNA microarray analysis of post-mortem brain tissue
    • 15474590
    • Mirnics K Levitt P Lewis DA DNA microarray analysis of post-mortem brain tissue Int Rev Neurobiol 2004, 60:153-81. 15474590
    • (2004) Int Rev Neurobiol , vol.60 , pp. 153-181
    • Mirnics, K.1    Levitt, P.2    Lewis, D.A.3
  • 16
    • 23444456437 scopus 로고    scopus 로고
    • Effects of RNA degradation on gene expression analysis of human post-mortem tissues
    • 15955843
    • Lee J Hever A Willhite D Zlotnik A Hevezi P Effects of RNA degradation on gene expression analysis of human post-mortem tissues FASEB J 2005, 19(10):1356-8. 15955843
    • (2005) FASEB J , vol.19 , Issue.10 , pp. 1356-1358
    • Lee, J.1    Hever, A.2    Willhite, D.3    Zlotnik, A.4    Hevezi, P.5
  • 17
  • 18
    • 0028845078 scopus 로고
    • The relative importance of pre-mortem acidosis and post-mortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins
    • 10.1016/0304-3940(95)12102-A 9064599
    • Harrison PJ Heath PR Eastwood SL Burnet PW McDonald B Pearson RC The relative importance of pre-mortem acidosis and post-mortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins Neurosci Lett 1995, 200:151-4. 10.1016/0304-3940(95)12102-A 9064599
    • (1995) Neurosci Lett , vol.200 , pp. 151-154
    • Harrison, P.J.1    Heath, P.R.2    Eastwood, S.L.3    Burnet, P.W.4    McDonald, B.5    Pearson, R.C.6
  • 19
    • 33746720828 scopus 로고    scopus 로고
    • Brain pH has a significant impact on human post-mortem hippocampal gene expression profiles
    • 10.1016/j.brainres.2006.05.043 16843448
    • Mexal S Berger R Adams CE Ross RG Freedman R Leonard S Brain pH has a significant impact on human post-mortem hippocampal gene expression profiles Brain Research 2006, 1106(1):1-11. 10.1016/ j.brainres.2006.05.043 16843448
    • (2006) Brain Research , vol.1106 , Issue.1 , pp. 1-11
    • Mexal, S.1    Berger, R.2    Adams, C.E.3    Ross, R.G.4    Freedman, R.5    Leonard, S.6
  • 22
    • 33748745764 scopus 로고    scopus 로고
    • Critical factors in gene expression in post-mortem human brain: Focus on studies in schizophrenia
    • 10.1016/j.biopsych.2006.06.019 16997002
    • Lipska BK Deep-Soboslay A Weickert CS Hyde TM Martin CE Herman MM Kleinman JE Critical factors in gene expression in post-mortem human brain: Focus on studies in schizophrenia Biol Psychiatry 2006, 60(6):650-658. 10.1016/j.biopsych.2006.06.019 16997002
    • (2006) Biol Psychiatry , vol.60 , Issue.6 , pp. 650-658
    • Lipska, B.K.1    Deep-Soboslay, A.2    Weickert, C.S.3    Hyde, T.M.4    Martin, C.E.5    Herman, M.M.6    Kleinman, J.E.7
  • 25
    • 0345257783 scopus 로고    scopus 로고
    • Chipping away at the chip bias: RNA degradation in microarray analysis
    • 10.1038/ng1203-292 14647279
    • Auer H Lyianarachchi S Newsom D Klisovic MI Marcucci G Kornacker K Chipping away at the chip bias: RNA degradation in microarray analysis Nat Genet 2003, 35(4):292-3. 10.1038/ng1203-292 14647279
    • (2003) Nat Genet , vol.35 , Issue.4 , pp. 292-293
    • Auer, H.1    Lyianarachchi, S.2    Newsom, D.3    Klisovic, M.I.4    Marcucci, G.5    Kornacker, K.6
  • 27
    • 33645560786 scopus 로고    scopus 로고
    • Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed effects models
    • 10.1093/biostatistics/kxj001 16135694
    • Archer KJ Dumur CI Joel SE Ramakrishnan V Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed effects models Biostatistics 2006, 7(2):198-212. 10.1093/biostatistics/kxj001 16135694
    • (2006) Biostatistics , vol.7 , Issue.2 , pp. 198-212
    • Archer, K.J.1    Dumur, C.I.2    Joel, S.E.3    Ramakrishnan, V.4
  • 28
    • 25444494145 scopus 로고    scopus 로고
    • Correlation test to assess low-level processing of high-density oligonucleotide microarray data
    • 1084343 15799785 10.1186/1471-2105-6-80
    • Pawitan Yu Correlation test to assess low-level processing of high-density oligonucleotide microarray data BMC Bioinformatics 2005, 6:80. 1084343 15799785 10.1186/1471-2105-6-80
    • (2005) BMC Bioinformatics , vol.6 , pp. 80
    • Pawitan, Yu.1
  • 29
    • 33847129281 scopus 로고    scopus 로고
    • Relationship between mRNA stability and length: An old question with a new twist
    • 10.1007/s10528-006-9059-5 17221301
    • Feng L Niu D-K Relationship between mRNA stability and length: An old question with a new twist Biochem Genet 2007, 45(1-2):131-7. 10.1007/ s10528-006-9059-5 17221301
    • (2007) Biochem Genet , vol.45 , Issue.1-2 , pp. 131-137
    • Feng, L.1    Niu, D.-K.2
  • 31
    • 0037252788 scopus 로고    scopus 로고
    • ARED 2.0: An update of AU-rich element mRNA database
    • 165470 12520039 10.1093/nar/gkg023
    • Bakheet T Williams BR Khabar KS ARED 2.0: An update of AU-rich element mRNA database Nucl Acids Res 2003, 31(1):421-3. 165470 12520039 10.1093/ nar/gkg023
    • (2003) Nucl Acids Res , vol.31 , Issue.1 , pp. 421-423
    • Bakheet, T.1    Williams, B.R.2    Khabar, K.S.3
  • 32
    • 33750616028 scopus 로고    scopus 로고
    • A summarisation approach for Affymetrix GeneChip data using reference training set from a large, biologically diverse database
    • 1624855 17059591 10.1186/1471-2105-7-464
    • Katz S Irizarry RA Lin X Tripputi M Porter MW A summarisation approach for Affymetrix GeneChip data using reference training set from a large, biologically diverse database BMC Bioinformatics 2006, 7:464. 1624855 17059591 10.1186/1471-2105-7-464
    • (2006) BMC Bioinformatics , vol.7 , pp. 464
    • Katz, S.1    Irizarry, R.A.2    Lin, X.3    Tripputi, M.4    Porter, M.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.