Novel oligonucleotide probes for in situ detection of pederin-producing endosymbionts of Paederus riparius rove beetles (Coleoptera: Staphylinidae)

FEMS Microbiology Letters

Volumn 319, Issue 1, 2011, Pages 73-81

  Kador, Matthias ^a   Horn, Marcus A ^a   Dettner, Konrad ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

Bacterial endosymbiont; FISH; Pederin; Polyketide; Pseudomonas; Rove beetle

Indexed keywords

OLIGONUCLEOTIDE; PEDERIN; POLYKETIDE SYNTHASE; RNA 16S;

ANIMAL CELL; COLEOPTERA; CONTROLLED STUDY; EGG LAYING; ELECTRON MICROSCOPY; ENDOSYMBIONT; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; INSECT CELL; LETTER; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PAEDERUS RIPARIUS; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS;

ANIMALS; BACTERIA; BACTERIAL PHYSIOLOGICAL PHENOMENA; BEETLES; FEMALE; IN SITU HYBRIDIZATION, FLUORESCENCE; OLIGONUCLEOTIDE PROBES; OVUM; PYRANS; SYMBIOSIS;

BACTERIA (MICROORGANISMS); COLEOPTERA; PAEDERUS; PAEDERUS RIPARIUS; PSEUDOMONAS; PSEUDOMONAS SP.; STAPHYLINIDAE;

EID: 79954986201     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2011.02270.x     Document Type: Letter

References (64)

1. Amann R & Fuchs BM (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol 6: 339-348.
2. Amann R, Fuchs BM & Behrens S (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotech 12: 231-236.
3. Amann RI, Krumholz L & Stahl DA (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic and environmental studies in microbiology. J Bacteriol 172: 762-770.
4. Amann RI, Ludwig W, Schleifer KH, Amann RI, Ludwig W & Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
5. Austin MB & Noel JP (2003) The chalcone synthase superfamily of type III polyketide synthases. Nat Prod Rep 20: 79-110.
6. Behrens S, Rühland C, Inacio J, Huber H, Fonseca A, Spencer-Martins I, Fuchs BM & Amann R (2003) In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microb 69: 1748-1758.
7. Berchtold M, Chatzinotas A, Schönhuber W, Brune A, Amann R, Hahn D & König H (1999) Differential enumeration and in situ localization of microorganisms in the hindgut of the lower termite Mastotermes darwiniensis by hybridization with rRNA-targeted probes. Arch Microbiol 172: 407-416.
8. Brosius J, Dull TL, Sleeter DD & Noller HF (1981) Gene organization and primary structure of a ribosomal operon from Escherichia coli. J Mol Biol 148: 107-127.
9. Buchner P (1960) Tiere als Mikrobenzüchter. Springer-Verlag OHG, Berlin.
10. Buchner P (1965) Endosymbiosis of Animals with Plant Microorganisms. Wiley Interscience Publishers, New York.
11. Buchner P (1969) Endosymbiosestudien an Schildläusen VIII. Die Symbionten der Palaeococcoidea. Z Morphol Ökol Tiere 64: 201-308.
12. Choi GJ, Lee S-W, Jang KS, Kim J-S, Cho KJ & Kim J-C (2004) Effects of chrysophanol, parietin and nepodin of Rumex crispus on barley and cucumber powdery mildews. Crop Prot 23: 1215-1221.
13. Costerton JW & Stewart PS (2000) Bacterial biofilms. Persistent Bacterial Infections (Nataro JP, Blaser MJ & Cunningham-Rundles S, eds), pp. 423-439. American Society of Microbiology, Washington, DC.
14. Costerton JW, Lewandowski Z, Caldwell DE, Korber DR & Lappin-Scott HM (1995) Microbial biofilms. Annu Rev Microbiol 49: 711-745.
15. Daims H, Brühl A, Amann R, Schleifer K-H & Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
16. Darby AC, Chandler SM, Welburn SC & Douglas AE (2005) Aphid-symbiotic bacteria cultured in insect cell lines. Appl Environ Microb 71: 4833-4839.
17. Davey ME (2008) Tracking dynamic interactions during plaque formation. J Bacteriol 190: 7869-7870.
18. Davidson SK & Stahl DA (2006) Transmission of nephridial bacteria of the earthworm Eisenia fetida. Appl Environ Microb 72: 769-775.
19. De Marzo L (1986) Morfologia delle uova in alcuni Pselafidi (Coleoptera). Entomologica (Bari) 21: 155-163.
20. Dettner K (2003) Lehrbuch der Entomologie, 2 Auflage. Spektrum Verlag, Heidelberg.
21. Ferrari BC, Tujula N, Stoner K & Kjelleberg S (2006) Catalyzed reporter deposition-fluorescence in situ hybridization allows for enrichment-independent detection of microcolony-forming soil bacteria. Appl Environ Microb 72: 918-922.
22. Ferrari BC, Winsley T, Gillings M & Binnerup S (2008) Cultivating previously uncultured soil bacteria using a soil substrate membrane system. Nat Protoc 3: 1261-1269.
23. Fuchs BM, Wallner G, Beisker W, Schwippl I, Ludwig W & Amann R (1998) Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labelled oligonucleotide probes. Appl Environ Microb 64: 4973-4982.
24. Hanley RS (1996) Immature stages of Scaphisoma castaneum Motschulsky (Coleoptera: Staphylinidae: Scaphidiinae), with observations on natural history, fungal hosts and development. P Entomol Soc Wash 98: 36-43.
25. Hopwood DA & Sherman DH (1990) Molecular genetics of polyketides and its comparison to fatty acid biosynthesis. Annu Rev Genet 24: 37-66.
26. Howard RW & Kistner DH (1978) The eggs of Trichopsenius depressus and T. frosti (Coleoptera: Staphylinidae, Trichopseniinae) with a comparison to those of their host termites Reticulitermes virginicus and R. flavipes (Isoptera: Rhinotermitidae, Herterotermitinae). Sociobiology 3: 99-106.
27. Hugenholtz P, Tyson WG & Blackall LL (2001) Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization. Method Mol Biol 176: 29-41.
28. Jewett JC & Rawal VH (2007) Total synthesis of pederin. Angew Chem Int Edit 46: 6502-6504.
29. Kellner RLL (1999) What is the basis of pederin polymorphism in Paederus riparius rove beetles? The endosymbiotic hypothesis. Entomol Exp App 93: 41-49.
30. Kellner RLL (2001a) Suppression of pederin biosynthesis through antibiotic elimination of endosymbionts in Paederus sabaeus. J Insect Physiol 47: 475-483.
31. Kellner RLL (2001b) Horizontal transmission of biosynthetic capabilities for pederin in Paederus melanurus (Coleoptera: Staphylinidae). Chemoecology 11: 127-130.
32. Kellner RLL (2002a) Molecular identification of an endosymbiotic bacterium associated with pederin biosynthesis in Paederus sabaeus (Coleoptera: Staphylinidae). Insect Biochem Molec 32: 389-395.
33. Kellner RLL (2002b) Interspecific transmission of Paederus endosymbionts: relationship to the genetic divergence among the bacteria associated with pederin biosynthesis. Chemoecology 12: 133-138.
34. Kellner RLL (2003) Stadium-specific transmission of endosymbionts needed for pederin biosynthesis in three species of Paederus rove beetles. Entomol Exp Appl 107: 115-124.
35. Kellner RLL & Dettner K (1996) Differential efficacy of toxic pederin in deterring potential arthropod predators of Paederus (Coleoptera: Staphylinidae) offspring. Oecologia 107: 293-300.
36. Kocienski P, Narquizian R, Raubo P, Smith C, Farrugia LJ, Muir K & Boyle FT (2000) Synthetic studies on the pederin family of antitumour agents. Syntheses of mycalamide B, theopederin D and pederin. J Chem Soc Pein T 1 1: 2357-2384.
37. Lewis K (2007) Persister cells, dormancy and infectious disease. Nat Rev Microbiol 5: 48-56.
38. Ludwig WO, Strunk R, Westram L et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
39. Manojlovic NT, Solujic S, Sukdolak S & Krstic LJ (2000) Isolation and antimicrobial activity of anthraquinones from some species of the lichen genus Xanthoria. J Serb Chem Soc 65: 555-560.
40. Manz W, Amann R, Ludwig W, Wagner M & Schleifer K-H (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15: 593-600.
41. Matsuda F, Tomiyoshi N, Yanagiya M & Matsumoto T (1988) Stereocontrolled total synthesis of (+)-pederine. Tetrahedron 44: 7063-7080.
42. Meixner J (1932) Coleoptera Latreille. Handbuch der Zoologie, Band 4: Teilband 1 und 2: Progoneata, Chilopoda, Insecta 1, 2, 3 (Kükenthal W & Krumbach T, eds), pp. 1188-1348. Walter de Gruyter, Berlin.
43. Moore BS (2005) Biosynthesis of marine natural products: microorganisms (Part A). Nat Prod Rep 22: 580-593.
44. Moore BS (2006) Biosynthesis of marine natural products: macroorganisms (Part B). Nat Prod Rep 23: 615-629.
45. Munro MHG, Blunt JW, Dumdei EJ, Hickford SJH, Lill RE, Li SX, Battershill CN & Duckworth AR (1999) The discovery and development of marine compounds with pharmaceutical potential. J Biotechnol 70: 15-25.
46. Narquizian R & Kocienski PJ (2000) The pederin family of antitumor agents: structures, synthesis and biological activity. The Role of Natural Products in Drug Discovery, Vol. 32 (Mulzer R & Bohlemann R, eds), pp. 25-56. Springer-Verlag, Heidelberg.
47. Nocker A & Camper AK (2009) Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques. FEMS Microbiol Lett 291: 137-142.
48. O'Tool GA & Kolter R (1998) Initiation of biofilm in Pseudomonas fluorescens WC365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Mol Microbiol 28: 449-461.
49. Paul GK, Gunasekera SP, Longley RE & Pomponi SA (2002) Theopederins K and L. Highly potent cytotoxic metabolites from a marine sponge Discodermia species. J Nat Prod 65: 59-61.
50. Pernthaler J, Glockner FO, Schonhuber W et al. (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Method Microbiol 30: 207-226.
51. Piel J (2002) A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles. P Natl Acad Sci USA 99: 14002-14007.
52. Piel J (2004) Metabolites from symbiotic bacteria. Nat Prod Rep 21: 519-538.
53. Piel J (2005) Wirkstoffe aus Symbiosen. BIOspektrum 2: 172-173.
54. Piel J (2006) Bacterial symbionts: prospects for the sustainable production of invertebrate-derived pharmaceuticals. Curr Med Chem 13: 39-50.
55. Piel J, Wen G, Platzer M & Hui D (2004) Unprecedented diversity of catalytic domains in the first four modules of the putative pederin polyketide synthase. ChemBioChem 5: 93-98.
56. Piel J, Butzke D, Fusetani N, Hui D, Platzer M, Wen G & Matsunaga S (2005) Exploring the chemistry of uncultivated bacterial symbionts: antitumor polyketides of the pederin family. J Nat Prod 68: 472-479.
57. Rein KS & Borrone J (1999) Polyketides from dinoflagellates: origins, pharmacology and biosynthesis. Comp Biochem Phys B 124: 117-131.
58. Simpson JS, Garson MJ, Blunt JW, Murray HG, Munro MHG & Hooper JNA (2000) Mycalamides C and D, cytotoxic compounds from the marine sponge Stylinos n. species. J Nat Prod 63: 704-706.
59. Steinhaus EA (1946) Insect Microbiology. Comstock Publishing Company, Ithaca, NY.
60. Takemura T, Nishii Y, Takahashi S, Kobayashi S & Nakata T (2002) Total synthesis of pederin, a potent insect toxin: the efficient synthesis of the right half, (+)-benzoylpedamide. Tetrahedron 58: 6359-6365.
61. Teuscher E & Lindequist U (1998) Biogene Gifte, 2 Aufl. Wissenschaftliche Verlagsgesellschaft, Stuttgart.
62. Vartoukian SR, Palmer RM & Wade WG (2009) Diversity and morphology of members of the phylum 'Synergistetes' in periodontal health and disease. Appl Environ Microb 75: 3777-3786.
63. Vartoukian SR, Palmer RM & Wade WG (2010) Cultivation of a Synergistetes strain representing a previously uncultivated lineage. Environ Microbiol 12: 916-928.
64. Vuong D, Capon RJ, Lacey E, Gill JH, Heiland K & Friedel TJ (2001) Onnamide F: a new nematocide from a Southern Australian marine sponge, Trachycladus laevispirulifer. J Nat Prod 64: 640-642.