메뉴 건너뛰기




Volumn 72, Issue 1, 2006, Pages 918-922

Catalyzed reporter deposition-fluorescence in situ hybridization allows for enrichment-independent detection of microcolony-forming soil bacteria

Author keywords

[No Author keywords available]

Indexed keywords

CATALYST ACTIVITY; DEPOSITION; FLUORESCENCE; GROWTH KINETICS; RNA; VISUALIZATION;

EID: 33644865138     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.1.918-922.2006     Document Type: Article
Times cited : (40)

References (24)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluorescent- oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in-situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in-situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0344406194 scopus 로고    scopus 로고
    • In situ accessability of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes
    • Behrens, S., C. Ruhland, J. Inacio, H. Huber, A. Fonseca, I. Spencer-Martins, B. Fuchs, and R. Amann. 2003. In situ accessability of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl. Environ. Microbiol. 69:1748-1758.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1748-1758
    • Behrens, S.1    Ruhland, C.2    Inacio, J.3    Huber, H.4    Fonseca, A.5    Spencer-Martins, I.6    Fuchs, B.7    Amann, R.8
  • 4
    • 0035216164 scopus 로고    scopus 로고
    • Ribosomal RNA content in microcolony forming soil bacteria measured by quantitative 16S rRNA hybridization and image analysis
    • Binnerup, S., J. Bloem, B. Hansen, W. Wolters, M. Veninga, and M. Hansen. 2001. Ribosomal RNA content in microcolony forming soil bacteria measured by quantitative 16S rRNA hybridization and image analysis. FEMS Microbiol. Ecol. 37:231-237.
    • (2001) FEMS Microbiol. Ecol. , vol.37 , pp. 231-237
    • Binnerup, S.1    Bloem, J.2    Hansen, B.3    Wolters, W.4    Veninga, M.5    Hansen, M.6
  • 5
    • 0038532917 scopus 로고    scopus 로고
    • Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): A quantitative review of published reports
    • Bouvier, T., and P. A. del Giorgio. 2003. Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports. FEMS Microbiol. Ecol. 44:3-15.
    • (2003) FEMS Microbiol. Ecol. , vol.44 , pp. 3-15
    • Bouvier, T.1    Del Giorgio, P.A.2
  • 6
    • 0031739767 scopus 로고    scopus 로고
    • Rapid method for fluorescent in situ ribosomal RNA labelling of Cryptosporidium parvum
    • Deere, D., G. Vesey, M. Milner, K. Williams, N. Ashbolt, and D. Veal. 1998. Rapid method for fluorescent in situ ribosomal RNA labelling of Cryptosporidium parvum. J. Appl. Microbiol. 85:807-818.
    • (1998) J. Appl. Microbiol. , vol.85 , pp. 807-818
    • Deere, D.1    Vesey, G.2    Milner, M.3    Williams, K.4    Ashbolt, N.5    Veal, D.6
  • 7
    • 25144507206 scopus 로고    scopus 로고
    • Bacterial communities associated with benthic organic matter in headwater stream micro-habitats
    • Fazi, S., S. Amalfitano, J. Pernthaler, and A. Puddu. 2005. Bacterial communities associated with benthic organic matter in headwater stream micro-habitats. Environ. Microbiol. 7:1633-1640.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1633-1640
    • Fazi, S.1    Amalfitano, S.2    Pernthaler, J.3    Puddu, A.4
  • 8
    • 29144482711 scopus 로고    scopus 로고
    • Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
    • Ferrari, B., S. Binnerup, and M. Gillings. 2005. Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Appl. Environ. Microbiol. 71:8714-8720.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8714-8720
    • Ferrari, B.1    Binnerup, S.2    Gillings, M.3
  • 9
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glockner, F. O., B. M. Fuchs, and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65:3721-3726.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glockner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 10
    • 8344250319 scopus 로고    scopus 로고
    • An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments
    • Ishii, K., M. Mußmann, B. J. MacGregor, and R. Amann. 2004. An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol. Ecol. 50:203-212.
    • (2004) FEMS Microbiol. Ecol. , vol.50 , pp. 203-212
    • Ishii, K.1    Mußmann, M.2    MacGregor, B.J.3    Amann, R.4
  • 11
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen, P. H., P. S. Yates, B. E. Grinton, P. M. Taylor, and M. Sait. 2002. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl. Environ. Microbiol. 68:2391-2396.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 12
    • 0037052320 scopus 로고    scopus 로고
    • Isolating 'uncultivable' microorganisms in pure culture in a simulated natural environment
    • Kaeberlein, T., K. Lewis, and S. Epstein. 2002. Isolating 'uncultivable' microorganisms in pure culture in a simulated natural environment. Science 296:1127-1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.3
  • 13
    • 12344287312 scopus 로고    scopus 로고
    • A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community
    • Moeseneder, M. M., J. M. Arrieta, and G. J. Herendl. 2005. A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microbiol. Ecol. 51:341-352.
    • (2005) FEMS Microbiol. Ecol. , vol.51 , pp. 341-352
    • Moeseneder, M.M.1    Arrieta, J.M.2    Herendl, G.J.3
  • 14
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094-3101.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 15
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe, M. S., S. A. Connon, K. L. Vergin, and S. L. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.L.4
  • 17
    • 4444344357 scopus 로고    scopus 로고
    • Oligotrophic bacteriplankton with a novel single-cell life strategy
    • Simu, K., and A. Hagstrom. 2004. Oligotrophic bacteriplankton with a novel single-cell life strategy. Appl. Environ. Microbiol. 70:2445-2451.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2445-2451
    • Simu, K.1    Hagstrom, A.2
  • 18
    • 0037721426 scopus 로고    scopus 로고
    • Isolation of a methane oxidising bacteria from soil by use of a soil substrate membrane system
    • Svenning, M. M., I. Wartiainen, A. G. Hestnes, and S. J. Binnerup. 2003. Isolation of a methane oxidising bacteria from soil by use of a soil substrate membrane system. FEMS Microbiol. Ecol. 1509:1-8.
    • (2003) FEMS Microbiol. Ecol. , vol.1509 , pp. 1-8
    • Svenning, M.M.1    Wartiainen, I.2    Hestnes, A.G.3    Binnerup, S.J.4
  • 19
    • 1142306012 scopus 로고    scopus 로고
    • Host specificity in marine sponge-associated bacteria, and potential implications for marine microbial diversity
    • Taylor, P. M., P. J. Schupp, P. Dahllof, S. Kjelleberg, and P. Steinberg. 2004. Host specificity in marine sponge-associated bacteria, and potential implications for marine microbial diversity. Environ. Microbiol. 6:121-130.
    • (2004) Environ. Microbiol. , vol.6 , pp. 121-130
    • Taylor, P.M.1    Schupp, P.J.2    Dahllof, P.3    Kjelleberg, S.4    Steinberg, P.5
  • 20
    • 3242797565 scopus 로고    scopus 로고
    • Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean
    • Teira, E., T. Reinthaler, A. Pernthaler, J. Pernthaler, and G. J. Herndl. 2004. Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl. Environ. Microbiol. 70:4411-4414.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4411-4414
    • Teira, E.1    Reinthaler, T.2    Pernthaler, A.3    Pernthaler, J.4    Herndl, G.J.5
  • 23
    • 0028161162 scopus 로고
    • Viability of indigenous soil bacteria assayed by respiratory activity and growth
    • Winding, A., S. Binnerup, and J. Sørensen. 1994. Viability of indigenous soil bacteria assayed by respiratory activity and growth. Appl. Environ. Microbiol. 60:2869-2875.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2869-2875
    • Winding, A.1    Binnerup, S.2    Sørensen, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.