-
1
-
-
33646559836
-
Environmental whole-genome amplification to access microbial populations in contaminated sediments
-
Abulencia C.B., Wyborski D.L., Garcia J.A., Podar M., Chen W., Chang S.H., Chang H.W., Watson D., Brodie E.L., Hazen T.C., Keller M. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Applied and Environmental Microbiology 2006, 72:3291-3301.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 3291-3301
-
-
Abulencia, C.B.1
Wyborski, D.L.2
Garcia, J.A.3
Podar, M.4
Chen, W.5
Chang, S.H.6
Chang, H.W.7
Watson, D.8
Brodie, E.L.9
Hazen, T.C.10
Keller, M.11
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
35148828953
-
Effects of heavy fuel oil on the bacterial community structure of a pristine microbial mat
-
Bordenave S., Goni-Urriza M.S., Caumette P., Duran R. Effects of heavy fuel oil on the bacterial community structure of a pristine microbial mat. Applied and Environmental Microbiology 2007, 73:6089-6097.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 6089-6097
-
-
Bordenave, S.1
Goni-Urriza, M.S.2
Caumette, P.3
Duran, R.4
-
5
-
-
43049111377
-
Analysis of bacterial communities in soil by use of denaturing gradient gel electrophoresis and clone libraries, as influenced by different reverse primers
-
Brons J.K., van Elsas J.D. Analysis of bacterial communities in soil by use of denaturing gradient gel electrophoresis and clone libraries, as influenced by different reverse primers. Applied and Environmental Microbiology 2008, 74:2717-2727.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 2717-2727
-
-
Brons, J.K.1
van Elsas, J.D.2
-
6
-
-
0034106187
-
Comparative analysis of the genes encoding 23S-5S rRNA intergenic spacer regions of lactobacillus casei-related strains
-
Chen H., Lim C.K., Lee Y.K., Chan Y.N. Comparative analysis of the genes encoding 23S-5S rRNA intergenic spacer regions of lactobacillus casei-related strains. International Journal of Systematic and Evolutionary Microbiology 2000, 50(Pt 2):471-478.
-
(2000)
International Journal of Systematic and Evolutionary Microbiology
, vol.50
, Issue.PART 2
, pp. 471-478
-
-
Chen, H.1
Lim, C.K.2
Lee, Y.K.3
Chan, Y.N.4
-
7
-
-
58149200948
-
The ribosomal database project: improved alignments and new tools for rRNA analysis
-
Cole J.R., Wang Q., Cardenas E., Fish J., Chai B., Farris R.J., Kulam-Syed-Mohideen A.S., McGarrell D.M., Marsh T., Garrity G.M., Tiedje J.M. The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research 2009, 37:D141-D145.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
8
-
-
33750941443
-
Identification of in situ 2,4-dichlorophenoxyacetic acid-degrading soil microorganisms using DNA-stable isotope probing
-
Cupples A.M., Sims G.K. Identification of in situ 2,4-dichlorophenoxyacetic acid-degrading soil microorganisms using DNA-stable isotope probing. Soil Biology and Biochemistry 2007, 39:232-238.
-
(2007)
Soil Biology and Biochemistry
, vol.39
, pp. 232-238
-
-
Cupples, A.M.1
Sims, G.K.2
-
9
-
-
0141495314
-
Nature of polymorphisms in 16S-23S rRNA gene intergenic transcribed spacer fingerprinting of bacillus and related genera
-
Daffonchio D., Cherif A., Brusetti L., Rizzi A., Mora D., Boudabous A., Borin S. Nature of polymorphisms in 16S-23S rRNA gene intergenic transcribed spacer fingerprinting of bacillus and related genera. Applied and Environmental Microbiology 2003, 69:5128-5137.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 5128-5137
-
-
Daffonchio, D.1
Cherif, A.2
Brusetti, L.3
Rizzi, A.4
Mora, D.5
Boudabous, A.6
Borin, S.7
-
10
-
-
0347760409
-
Bacterial diversity in agricultural soils during litter decomposition
-
Dilly O., Bloem J., Vos A., Munch J.C. Bacterial diversity in agricultural soils during litter decomposition. Applied and Environmental Microbiology 2004, 70:468-474.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 468-474
-
-
Dilly, O.1
Bloem, J.2
Vos, A.3
Munch, J.C.4
-
11
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
-
Dojka M.A., Hugenholtz P., Haack S.K., Pace N.R. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Applied and Environmental Microbiology 1998, 64:3869-3877.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
12
-
-
0036209157
-
Horizontal gene transfer and bacterial diversity
-
Dutta C., Pan A. Horizontal gene transfer and bacterial diversity. Journal of Biosciences 2002, 27:27-33.
-
(2002)
Journal of Biosciences
, vol.27
, pp. 27-33
-
-
Dutta, C.1
Pan, A.2
-
13
-
-
33750091933
-
Changes in active bacterial communities before and after dredging of highly polluted baltic sea sediments
-
Edlund A., Jansson J.K. Changes in active bacterial communities before and after dredging of highly polluted baltic sea sediments. Applied and Environmental Microbiology 2006, 72:6800-6807.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 6800-6807
-
-
Edlund, A.1
Jansson, J.K.2
-
14
-
-
0029835362
-
Acinetobacter species identification by using tRNA spacer fingerprinting
-
Ehrenstein B., Bernards A.T., Dijkshoorn L., Gerner-Smidt P., Towner K.J., Bouvet P.J., Daschner F.D., Grundmann H. Acinetobacter species identification by using tRNA spacer fingerprinting. Journal of Clinical Microbiology 1996, 34:2414-2420.
-
(1996)
Journal of Clinical Microbiology
, vol.34
, pp. 2414-2420
-
-
Ehrenstein, B.1
Bernards, A.T.2
Dijkshoorn, L.3
Gerner-Smidt, P.4
Towner, K.J.5
Bouvet, P.J.6
Daschner, F.D.7
Grundmann, H.8
-
15
-
-
0037979242
-
Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil
-
Ellis R.J., Morgan P., Weightman A.J., Fry J.C. Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Applied and Environmental Microbiology 2003, 69:3223-3230.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 3223-3230
-
-
Ellis, R.J.1
Morgan, P.2
Weightman, A.J.3
Fry, J.C.4
-
16
-
-
0031778612
-
PAGE analysis of the heteroduplexes formed between PCR-amplified 16S rRNA genes: estimation of sequence similarity and rDNA complexity
-
Espejo R.T., Feijoo C.G., Romero J., Vasquez M. PAGE analysis of the heteroduplexes formed between PCR-amplified 16S rRNA genes: estimation of sequence similarity and rDNA complexity. Microbiology (Reading, England) 1998, 144:1611-1617.
-
(1998)
Microbiology (Reading, England)
, vol.144
, pp. 1611-1617
-
-
Espejo, R.T.1
Feijoo, C.G.2
Romero, J.3
Vasquez, M.4
-
18
-
-
0037227464
-
Variations in microbial community composition through two soil depth profiles
-
Fierer N., Schimel J.P., Holden P.A. Variations in microbial community composition through two soil depth profiles. Soil Biology and Biochemistry 2003, 35:167-176.
-
(2003)
Soil Biology and Biochemistry
, vol.35
, pp. 167-176
-
-
Fierer, N.1
Schimel, J.P.2
Holden, P.A.3
-
19
-
-
0033135694
-
Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity
-
Garcia-Martinez J., Acinas S.G., Anton A.I., Rodriguez-Valera F. Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity. Journal of Microbiological Methods 1999, 36:55-64.
-
(1999)
Journal of Microbiological Methods
, vol.36
, pp. 55-64
-
-
Garcia-Martinez, J.1
Acinas, S.G.2
Anton, A.I.3
Rodriguez-Valera, F.4
-
20
-
-
71049163780
-
Paleosols in central Illinois as potential sources of ammonium in groundwater
-
Glessner J.J.G., Roy W.R. Paleosols in central Illinois as potential sources of ammonium in groundwater. Ground Water Monitoring & Remediation 2009, 29:56-64.
-
(2009)
Ground Water Monitoring & Remediation
, vol.29
, pp. 56-64
-
-
Glessner, J.J.G.1
Roy, W.R.2
-
21
-
-
23944499633
-
Horizontal gene transfer, genome innovation and evolution
-
Gogarten J.P., Townsend J.P. Horizontal gene transfer, genome innovation and evolution. Nature Reviews Microbiology 2005, 3:679-687.
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 679-687
-
-
Gogarten, J.P.1
Townsend, J.P.2
-
22
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
-
Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium 1999, Ser 41:95-98.
-
(1999)
Nucleic Acids Symposium
, vol.SER 41
, pp. 95-98
-
-
Hall, T.A.1
-
23
-
-
40549127742
-
Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile
-
Hansel C.M., Fendorf S., Jardine P.M., Francis C.A. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Applied and Environmental Microbiology 2008, 74:1620-1633.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 1620-1633
-
-
Hansel, C.M.1
Fendorf, S.2
Jardine, P.M.3
Francis, C.A.4
-
24
-
-
33750994012
-
Molecular diversity studies of bacterial communities of oil polluted microbial mats from the Etang de Berre (France)
-
Hernandez-Raquet G., Budzinski H., Caumette P., Dabert P., Le Menach K., Muyzer G., Duran R. Molecular diversity studies of bacterial communities of oil polluted microbial mats from the Etang de Berre (France). FEMS Microbiology Ecology 2006, 58:550-562.
-
(2006)
FEMS Microbiology Ecology
, vol.58
, pp. 550-562
-
-
Hernandez-Raquet, G.1
Budzinski, H.2
Caumette, P.3
Dabert, P.4
Le Menach, K.5
Muyzer, G.6
Duran, R.7
-
25
-
-
33846872201
-
Microbial processes in the vadose zone
-
Holden P.A. Microbial processes in the vadose zone. Vadose Zone Journal 2005, 4:1-21.
-
(2005)
Vadose Zone Journal
, vol.4
, pp. 1-21
-
-
Holden, P.A.1
-
26
-
-
33646795680
-
Direct comparison of single-strand conformation polymorphism (SSCP) and denaturing gradient gel electrophoresis (DGGE) to characterize a microbial community on the basis of 16S rRNA gene fragments
-
Hori T., Haruta S., Ueno Y., Ishii M., Igarashi Y. Direct comparison of single-strand conformation polymorphism (SSCP) and denaturing gradient gel electrophoresis (DGGE) to characterize a microbial community on the basis of 16S rRNA gene fragments. Journal of Microbiological Methods 2006, 66:165-169.
-
(2006)
Journal of Microbiological Methods
, vol.66
, pp. 165-169
-
-
Hori, T.1
Haruta, S.2
Ueno, Y.3
Ishii, M.4
Igarashi, Y.5
-
27
-
-
33644952722
-
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
-
Janssen P.H. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Applied and Environmental Microbiology 2006, 72:1719-1728.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 1719-1728
-
-
Janssen, P.H.1
-
28
-
-
0027745825
-
Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions
-
Jensen M.A., Straus N. Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions. PCR Methods and Applications 1993, 3:186-194.
-
(1993)
PCR Methods and Applications
, vol.3
, pp. 186-194
-
-
Jensen, M.A.1
Straus, N.2
-
29
-
-
33846423556
-
Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective
-
Jones S.E., Shade A.L., McMahon K.D., Kent A.D. Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective. Applied and Environmental Microbiology 2007, 73:659-662.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 659-662
-
-
Jones, S.E.1
Shade, A.L.2
McMahon, K.D.3
Kent, A.D.4
-
30
-
-
0034888778
-
Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. westar) employing cultivation-dependent and cultivation-independent approaches
-
Kaiser O., Pühler A., Selbitschka W. Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. westar) employing cultivation-dependent and cultivation-independent approaches. Microbial Ecology 2001, 42:136-149.
-
(2001)
Microbial Ecology
, vol.42
, pp. 136-149
-
-
Kaiser, O.1
Pühler, A.2
Selbitschka, W.3
-
32
-
-
0242657463
-
Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities
-
Kent A.D., Smith D.J., Benson B.J., Triplett E.W. Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Applied and Environmental Microbiology 2003, 69:6768-6776.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 6768-6776
-
-
Kent, A.D.1
Smith, D.J.2
Benson, B.J.3
Triplett, E.W.4
-
33
-
-
40649125049
-
Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics
-
Koeppel A., Perry E.B., Sikorski J., Krizanc D., Warner A., Ward D.M., Rooney A.P., Brambilla E., Connor N., Ratcliff R.M., Nevo E., Cohan F.M. Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:2504-2509.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 2504-2509
-
-
Koeppel, A.1
Perry, E.B.2
Sikorski, J.3
Krizanc, D.4
Warner, A.5
Ward, D.M.6
Rooney, A.P.7
Brambilla, E.8
Connor, N.9
Ratcliff, R.M.10
Nevo, E.11
Cohan, F.M.12
-
34
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu W.T., Marsh T.L., Cheng H., Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 1997, 63:4516-4522.
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
35
-
-
30344468423
-
Soil organic matter in urban soils: estimation of elemental carbon by thermal oxidation and characterization of organic matter by solid-state 13C nuclear magnetic resonance (NMR) spectroscopy
-
Lorenz K., Preston C.M., Kandeler E. Soil organic matter in urban soils: estimation of elemental carbon by thermal oxidation and characterization of organic matter by solid-state 13C nuclear magnetic resonance (NMR) spectroscopy. Geoderma 2006, 130:312-323.
-
(2006)
Geoderma
, vol.130
, pp. 312-323
-
-
Lorenz, K.1
Preston, C.M.2
Kandeler, E.3
-
36
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz M.G. Bacterial gene transfer by natural genetic transformation in the environment. Microbiology and Molecular Biology Reviews 1994, 58:563.
-
(1994)
Microbiology and Molecular Biology Reviews
, vol.58
, pp. 563
-
-
Lorenz, M.G.1
-
37
-
-
0032772104
-
Microbial population changes during bioremediation of an experimental oil spill
-
MacNaughton S.J., Stephen J.R., Venosa A.D., Davis G.A., Chang Y.J., White D.C. Microbial population changes during bioremediation of an experimental oil spill. Applied and Environmental Microbiology 1999, 65:3566-3574.
-
(1999)
Applied and Environmental Microbiology
, vol.65
, pp. 3566-3574
-
-
MacNaughton, S.J.1
Stephen, J.R.2
Venosa, A.D.3
Davis, G.A.4
Chang, Y.J.5
White, D.C.6
-
38
-
-
0038317584
-
Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils
-
Margesin R., Labbe D., Schinner F., Greer C.W., Whyte L.G. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Applied and Environmental Microbiology 2003, 69:3085-3092.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 3085-3092
-
-
Margesin, R.1
Labbe, D.2
Schinner, F.3
Greer, C.W.4
Whyte, L.G.5
-
39
-
-
0037351811
-
16S-23S rRNA intergenic spacer region sequence variation in Streptococcus thermophilus and related dairy streptococci and development of a multiplex ITS-SSCP analysis for their identification
-
Mora D., Ricci G., Guglielmetti S., Daffonchio D., Fortina M.G. 16S-23S rRNA intergenic spacer region sequence variation in Streptococcus thermophilus and related dairy streptococci and development of a multiplex ITS-SSCP analysis for their identification. Microbiology (Reading, England) 2003, 149:807-813.
-
(2003)
Microbiology (Reading, England)
, vol.149
, pp. 807-813
-
-
Mora, D.1
Ricci, G.2
Guglielmetti, S.3
Daffonchio, D.4
Fortina, M.G.5
-
40
-
-
33645451883
-
Molecular analysis of microbial communities identified in different developmental stages of Ixodes scapularis ticks from Westchester and Dutchess counties, New York
-
Moreno C.X., Moy F., Daniels T.J., Godfrey H.P., Cabello F.C. Molecular analysis of microbial communities identified in different developmental stages of Ixodes scapularis ticks from Westchester and Dutchess counties, New York. Environmental Microbiology 2006, 8:761-772.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 761-772
-
-
Moreno, C.X.1
Moy, F.2
Daniels, T.J.3
Godfrey, H.P.4
Cabello, F.C.5
-
41
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 1993, 59:695-700.
-
(1993)
Applied and Environmental Microbiology
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
42
-
-
0034233490
-
Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products
-
Nakatsu C.H. Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Science Society of America Journal 2000, 64:1382.
-
(2000)
Soil Science Society of America Journal
, vol.64
, pp. 1382
-
-
Nakatsu, C.H.1
-
43
-
-
34748862991
-
Race, wealth, and solid waste facilities in North Carolina
-
Norton J.M., Wing S., Lipscomb H.J., Kaufman J.S., Marshall S.W., Cravey A.J. Race, wealth, and solid waste facilities in North Carolina. Environmental Health Perspectives 2007, 115:1344-1350.
-
(2007)
Environmental Health Perspectives
, vol.115
, pp. 1344-1350
-
-
Norton, J.M.1
Wing, S.2
Lipscomb, H.J.3
Kaufman, J.S.4
Marshall, S.W.5
Cravey, A.J.6
-
45
-
-
79954611322
-
Evaluation of a pilot scale subsurface constructed wetland system for leachate treatment from the morro de Moravia in Medellín, Colombia
-
Peñuela Mesa G.A., Nagles N., Morato J. Evaluation of a pilot scale subsurface constructed wetland system for leachate treatment from the morro de Moravia in Medellín, Colombia. 3rd Wetland Pollutant Dynamics and Control- WETPOL 2009, vol. 15.
-
(2009)
3rd Wetland Pollutant Dynamics and Control- WETPOL
, vol.15
-
-
Peñuela Mesa, G.A.1
Nagles, N.2
Morato, J.3
-
46
-
-
15144358617
-
Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
-
Perez Luz S., Rodriguez-Valera F., Lan R., Reeves P.R. Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. Journal of Bacteriology 1998, 180:2144-2151.
-
(1998)
Journal of Bacteriology
, vol.180
, pp. 2144-2151
-
-
Perez Luz, S.1
Rodriguez-Valera, F.2
Lan, R.3
Reeves, P.R.4
-
47
-
-
79954570524
-
Isolation of a selected microbial consortium from a contaminated site soil capable of degrading the pesticides methyl parathion and chlorpyrifos
-
Pino Rodriguez N.J., Peñuela Mesa G.A. Isolation of a selected microbial consortium from a contaminated site soil capable of degrading the pesticides methyl parathion and chlorpyrifos. New Biotechnology 2009, 25:S53.
-
(2009)
New Biotechnology
, vol.25
-
-
Pino Rodriguez, N.J.1
Peñuela Mesa, G.A.2
-
48
-
-
33750937534
-
Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils
-
Popp N., Schlomann M., Mau M. Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils. Microbiology (Reading, England) 2006, 152:3291-3304.
-
(2006)
Microbiology (Reading, England)
, vol.152
, pp. 3291-3304
-
-
Popp, N.1
Schlomann, M.2
Mau, M.3
-
49
-
-
0034466653
-
Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking
-
Ranjard L., Brothier E., Nazaret S. Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Applied and Environmental Microbiology 2000, 66:5334-5339.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 5334-5339
-
-
Ranjard, L.1
Brothier, E.2
Nazaret, S.3
-
51
-
-
0035491310
-
Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer
-
Roling W.F., van Breukelen B.M., Braster M., Lin B., van Verseveld H.W. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Applied and Environmental Microbiology 2001, 67:4619-4629.
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 4619-4629
-
-
Roling, W.F.1
van Breukelen, B.M.2
Braster, M.3
Lin, B.4
van Verseveld, H.W.5
-
52
-
-
2442643152
-
Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil
-
Roling W.F., Milner M.G., Jones D.M., Fratepietro F., Swannell R.P., Daniel F., Head I.M. Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Applied and Environmental Microbiology 2004, 70:2603-2613.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 2603-2613
-
-
Roling, W.F.1
Milner, M.G.2
Jones, D.M.3
Fratepietro, F.4
Swannell, R.P.5
Daniel, F.6
Head, I.M.7
-
53
-
-
1342283105
-
Health hazards and waste management
-
Rushton L. Health hazards and waste management. British Medical Bulletin 2003, 68:183-197.
-
(2003)
British Medical Bulletin
, vol.68
, pp. 183-197
-
-
Rushton, L.1
-
54
-
-
33750972041
-
The mosaic nature of intergenic 16S-23S rRNA spacer regions suggests rRNA operon copy number variation in clostridium difficile strains
-
Sadeghifard N., Gurtler V., Beer M., Seviour R.J. The mosaic nature of intergenic 16S-23S rRNA spacer regions suggests rRNA operon copy number variation in clostridium difficile strains. Applied and Environmental Microbiology 2006, 72:7311-7323.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 7311-7323
-
-
Sadeghifard, N.1
Gurtler, V.2
Beer, M.3
Seviour, R.J.4
-
56
-
-
79954598910
-
Botanical diversity and heavy metal content in the residue matrix and plants at the moravia dump in Medellín, Colombia
-
Sánchez M.S., Cogollo A., Arroyave C., Torrenegra R.D., Giraldo A.M., Barahona R. Botanical diversity and heavy metal content in the residue matrix and plants at the moravia dump in Medellín, Colombia. Revista Facultad Nacional de Agronomía, Medellín 2010, 63:5209-5224.
-
(2010)
Revista Facultad Nacional de Agronomía, Medellín
, vol.63
, pp. 5209-5224
-
-
Sánchez, M.S.1
Cogollo, A.2
Arroyave, C.3
Torrenegra, R.D.4
Giraldo, A.M.5
Barahona, R.6
-
57
-
-
10444275157
-
A previously unexposed forest soil microbial community degrades high levels of the pollutant 2,4,6-trichlorophenol
-
Sanchez M.A., Vasquez M., Gonzalez B. A previously unexposed forest soil microbial community degrades high levels of the pollutant 2,4,6-trichlorophenol. Applied and Environmental Microbiology 2004, 70:7567-7570.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 7567-7570
-
-
Sanchez, M.A.1
Vasquez, M.2
Gonzalez, B.3
-
58
-
-
74249107648
-
Characterization of microorganisms at different landfill depths using carbon-utilization patterns and 16S rRNA gene based T-RFLP
-
Sawamura H., Yamada M., Endo K., Soda S., Ishigaki T., Ike M. Characterization of microorganisms at different landfill depths using carbon-utilization patterns and 16S rRNA gene based T-RFLP. Journal of Bioscience and Bioengineering 2010, 109:130-137.
-
(2010)
Journal of Bioscience and Bioengineering
, vol.109
, pp. 130-137
-
-
Sawamura, H.1
Yamada, M.2
Endo, K.3
Soda, S.4
Ishigaki, T.5
Ike, M.6
-
59
-
-
0033761807
-
Black carbon in soils and sediments: analysis, distribution, implications, and current challenges
-
Schmidt M.W.I. Black carbon in soils and sediments: analysis, distribution, implications, and current challenges. Global Biogeochemical Cycles 2000, 14:777.
-
(2000)
Global Biogeochemical Cycles
, vol.14
, pp. 777
-
-
Schmidt, M.W.I.1
-
60
-
-
34248571862
-
MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes
-
Shyu C., Soule T., Bent S.J., Foster J.A., Forney L.J. MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes. Microbial Ecology 2007, 53:562-570.
-
(2007)
Microbial Ecology
, vol.53
, pp. 562-570
-
-
Shyu, C.1
Soule, T.2
Bent, S.J.3
Foster, J.A.4
Forney, L.J.5
-
61
-
-
78650417655
-
Biological remediation of soil: an overview of global market and available technologies
-
Springer-Verlag, Berlin Heidelberg, A. Singh, R.C. Kuhard, O.P. Ward (Eds.)
-
Singh A., Kuhard R.C., Ward O.P. Biological remediation of soil: an overview of global market and available technologies. Advances in Applied Bioremediation 2009, 1-20. Springer-Verlag, Berlin Heidelberg. A. Singh, R.C. Kuhard, O.P. Ward (Eds.).
-
(2009)
Advances in Applied Bioremediation
, pp. 1-20
-
-
Singh, A.1
Kuhard, R.C.2
Ward, O.P.3
-
63
-
-
34247866371
-
Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results?
-
Smalla K., Oros-Sichler M., Milling A., Heuer H., Baumgarte S., Becker R., Neuber G., Kropf S., Ulrich A., Tebbe C.C. Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results?. Journal of Microbiological Methods 2007, 69:470-479.
-
(2007)
Journal of Microbiological Methods
, vol.69
, pp. 470-479
-
-
Smalla, K.1
Oros-Sichler, M.2
Milling, A.3
Heuer, H.4
Baumgarte, S.5
Becker, R.6
Neuber, G.7
Kropf, S.8
Ulrich, A.9
Tebbe, C.C.10
-
64
-
-
33646248092
-
Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches
-
Takaku H., Kodaira S., Kimoto A., Nashimoto M., Takagi M. Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. Journal of Bioscience and Bioengineering 2006, 101:42-50.
-
(2006)
Journal of Bioscience and Bioengineering
, vol.101
, pp. 42-50
-
-
Takaku, H.1
Kodaira, S.2
Kimoto, A.3
Nashimoto, M.4
Takagi, M.5
-
65
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
66
-
-
40949087773
-
Community structures of actively growing bacteria shift along a north-south transect in the western north Pacific
-
Taniguchi A., Hamasaki K. Community structures of actively growing bacteria shift along a north-south transect in the western north Pacific. Environmental Microbiology 2008, 10:1007-1017.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 1007-1017
-
-
Taniguchi, A.1
Hamasaki, K.2
-
67
-
-
14744292677
-
Molecular analysis of microbial community in a groundwater sample polluted by landfill leachate and seawater
-
Tian Y.J., Yang H., Wu X.J., Li D.T. Molecular analysis of microbial community in a groundwater sample polluted by landfill leachate and seawater. Journal of Zhejiang University. Science B 2005, 6:165-170.
-
(2005)
Journal of Zhejiang University. Science B
, vol.6
, pp. 165-170
-
-
Tian, Y.J.1
Yang, H.2
Wu, X.J.3
Li, D.T.4
-
68
-
-
0037052493
-
Prokaryotic diversity-magnitude, dynamics, and controlling factors
-
Torsvik V., Ovreas L., Thingstad T.F. Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 2002, 296:1064-1066.
-
(2002)
Science
, vol.296
, pp. 1064-1066
-
-
Torsvik, V.1
Ovreas, L.2
Thingstad, T.F.3
-
69
-
-
0345195995
-
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
-
Von Wintzingerode F., Göbel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiology Reviews 1997, 21:213-229.
-
(1997)
FEMS Microbiology Reviews
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Göbel, U.B.2
Stackebrandt, E.3
-
70
-
-
0034969905
-
Analysis of pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes
-
van Beilen J.B., Panke S., Lucchini S., Franchini A.G., Rothlisberger M., Witholt B. Analysis of pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology (Reading, England) 2001, 147:1621-1630.
-
(2001)
Microbiology (Reading, England)
, vol.147
, pp. 1621-1630
-
-
van Beilen, J.B.1
Panke, S.2
Lucchini, S.3
Franchini, A.G.4
Rothlisberger, M.5
Witholt, B.6
-
72
-
-
32044472103
-
Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil
-
Vinas M., Sabate J., Espuny M.J., Solanas A.M. Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Applied and Environmental Microbiology 2005, 71:7008-7018.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 7008-7018
-
-
Vinas, M.1
Sabate, J.2
Espuny, M.J.3
Solanas, A.M.4
-
73
-
-
62549091536
-
Risk of congenital anomalies around a municipal solid waste incinerator: a GIS-based case-control study
-
Vinceti M., Malagoli C., Fabbi S., Teggi S., Rodolfi R., Garavelli L., Astolfi G., Rivieri F. Risk of congenital anomalies around a municipal solid waste incinerator: a GIS-based case-control study. International Journal of Health Geographics 2009, 8:8.
-
(2009)
International Journal of Health Geographics
, vol.8
, pp. 8
-
-
Vinceti, M.1
Malagoli, C.2
Fabbi, S.3
Teggi, S.4
Rodolfi, R.5
Garavelli, L.6
Astolfi, G.7
Rivieri, F.8
-
74
-
-
4143101632
-
Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis
-
Yu Z., Morrison M. Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 2004, 70:4800-4806.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 4800-4806
-
-
Yu, Z.1
Morrison, M.2
-
75
-
-
1642342085
-
Microbial diversity and heterogeneity in sandy subsurface soils
-
Zhou J., Xia B., Huang H., Palumbo A.V., Tiedje J.M. Microbial diversity and heterogeneity in sandy subsurface soils. Applied and Environmental Microbiology 2004, 70:1723-1734.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 1723-1734
-
-
Zhou, J.1
Xia, B.2
Huang, H.3
Palumbo, A.V.4
Tiedje, J.M.5
-
76
-
-
0036136025
-
Spatial and resource factors influencing high microbial diversity in soil
-
Zhou J., Xia B., Treves D.S., Wu L.Y., Marsh T.L., O'Neill R.V., Palumbo A.V., Tiedje J.M. Spatial and resource factors influencing high microbial diversity in soil. Applied and Environmental Microbiology 2002, 68:326-334.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 326-334
-
-
Zhou, J.1
Xia, B.2
Treves, D.S.3
Wu, L.Y.4
Marsh, T.L.5
O'Neill, R.V.6
Palumbo, A.V.7
Tiedje, J.M.8
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