메뉴 건너뛰기




Volumn 74, Issue 5, 2008, Pages 1620-1633

Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; BACTERIA; FUNCTIONAL GROUPS; GENES; WATER CONTENT;

EID: 40549127742     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01787-07     Document Type: Article
Times cited : (406)

References (94)
  • 1
    • 1842812502 scopus 로고    scopus 로고
    • Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA
    • Agnelli, A., J. Ascher, G. Corti, M. T. Ceccherini, P. Nannipieri, and G. Pietramellara. 2004. Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA. Soil Biol. Biochem. 36:859-868.
    • (2004) Soil Biol. Biochem , vol.36 , pp. 859-868
    • Agnelli, A.1    Ascher, J.2    Corti, G.3    Ceccherini, M.T.4    Nannipieri, P.5    Pietramellara, G.6
  • 5
    • 34248225741 scopus 로고    scopus 로고
    • Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum
    • Barns, S. M., E. C. Cain, L. Sommerville, and C. R. Kuske. 2007. Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl. Environ. Microbiol. 73:3113-3116.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 3113-3116
    • Barns, S.M.1    Cain, E.C.2    Sommerville, L.3    Kuske, C.R.4
  • 6
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barns, S. M., S. Takala, and C. R. Kuske. 1999. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl. Environ. Microbiol. 65:1731-1737.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.2    Kuske, C.R.3
  • 7
    • 33845520639 scopus 로고    scopus 로고
    • Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico
    • Beman, J. M., and C. A. Francis. 2006. Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico. Appl. Environ. Microbiol. 72:7767-7777.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 7767-7777
    • Beman, J.M.1    Francis, C.A.2
  • 9
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker, G., A. Fesefeldt, and K. P. Witzel. 1998. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64:3769-3775.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.P.3
  • 10
    • 0031733317 scopus 로고    scopus 로고
    • Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
    • Buckley, D. H., J. R. Graber, and T. M. Schmidt. 1998. Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl. Environ. Microbiol. 64:4333-4339.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 4333-4339
    • Buckley, D.H.1    Graber, J.R.2    Schmidt, T.M.3
  • 11
    • 0036946818 scopus 로고    scopus 로고
    • Composition and function of sulfate-reducing prokaryotes in eutrophic and pristine areas of the Florida Everglades
    • Castro, H., K. R. Reddy, and A. Ogram. 2002. Composition and function of sulfate-reducing prokaryotes in eutrophic and pristine areas of the Florida Everglades. Appl. Environ. Microbiol. 68:6129-6137.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 6129-6137
    • Castro, H.1    Reddy, K.R.2    Ogram, A.3
  • 12
    • 0024164996 scopus 로고
    • Bacterial transport in fractured rock: A field-scale tracer test at the Chalk River Nuclear Laboratories
    • Champ, D. R., and J. Schroeter. 1988. Bacterial transport in fractured rock: a field-scale tracer test at the Chalk River Nuclear Laboratories. Water Sci. Technol. 20:81-87.
    • (1988) Water Sci. Technol , vol.20 , pp. 81-87
    • Champ, D.R.1    Schroeter, J.2
  • 13
    • 0032733240 scopus 로고    scopus 로고
    • Coates, J. D., D. Ellis, C. W. Gaw, and D. R. Lovley. 1999. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int. J. Syst. Bacteriol. 49:1615-1622.
    • Coates, J. D., D. Ellis, C. W. Gaw, and D. R. Lovley. 1999. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int. J. Syst. Bacteriol. 49:1615-1622.
  • 14
    • 0001108063 scopus 로고    scopus 로고
    • Curie, J. A. 1961. Gaseous diffusion in porous media. III. Wet granular materials. Br. J. Appl. Phys. 12:275-281.
    • Curie, J. A. 1961. Gaseous diffusion in porous media. III. Wet granular materials. Br. J. Appl. Phys. 12:275-281.
  • 15
    • 19144366982 scopus 로고    scopus 로고
    • The metagenomics of soil
    • Daniel, R. 2005. The metagenomics of soil. Nat. Rev. Microbiol. 3:470-478.
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 470-478
    • Daniel, R.1
  • 16
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 17
    • 0036269049 scopus 로고    scopus 로고
    • Empirical and theoretical bacterial diversity in four Arizona soils
    • Dunbar, J., S. M. Barns, L. O. Ticknor, and C. R. Kuske. 2002. Empirical and theoretical bacterial diversity in four Arizona soils. Appl. Environ. Microbiol. 68:3035-3045.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3035-3045
    • Dunbar, J.1    Barns, S.M.2    Ticknor, L.O.3    Kuske, C.R.4
  • 18
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar, J., S. Takala, S. M. Barns, J. A. Davis, and C. R. Kuske. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65:1662-1669.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 19
    • 34247606048 scopus 로고    scopus 로고
    • Isolation and characterization of soil bacteria that define Terriglobus gen. nov. in the phylum Acidobacteria
    • Eichorst, S. A., J. A. Breznak, and T. M. Schmidt. 2007. Isolation and characterization of soil bacteria that define Terriglobus gen. nov. in the phylum Acidobacteria. Appl. Environ. Microbiol. 73:2708-2717.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2708-2717
    • Eichorst, S.A.1    Breznak, J.A.2    Schmidt, T.M.3
  • 20
    • 22044437246 scopus 로고    scopus 로고
    • Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste
    • Fields, M. W., T. Yan, S.-K. Rhee, S. L. Carroll, P. M. Jardine, D. B. Watson, C. S. Criddle, and J. Zhou. 2005. Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste. FEMS Microbiol. Ecol. 53:417-428.
    • (2005) FEMS Microbiol. Ecol , vol.53 , pp. 417-428
    • Fields, M.W.1    Yan, T.2    Rhee, S.-K.3    Carroll, S.L.4    Jardine, P.M.5    Watson, D.B.6    Criddle, C.S.7    Zhou, J.8
  • 21
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer, N., M. A. Bradford, and R. B. Jackson. 2007. Toward an ecological classification of soil bacteria. Ecology 88:1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 22
    • 0141760520 scopus 로고    scopus 로고
    • Controls on microbial CO2 production: A comparison of surface and subsurface soil horizons
    • Fierer, N., J. P. Schimel, and P. A. Holden. 2003. Controls on microbial CO2 production: a comparison of surface and subsurface soil horizons. Global Change Biol. 9:1322-1332.
    • (2003) Global Change Biol , vol.9 , pp. 1322-1332
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 23
    • 0037227464 scopus 로고    scopus 로고
    • Variations in microbial community composition through two soil depth profiles
    • Fierer, N., J. P. Schimel, and P. A. Holden. 2003. Variations in microbial community composition through two soil depth profiles. Soil Biol. Biochem. 35:167-176.
    • (2003) Soil Biol. Biochem , vol.35 , pp. 167-176
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 24
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis, C. A., K. J. Roberts, J. M. Beman, A. E. Santoro, and B. B. Oakley. 2005. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. USA 102:14683-14688.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 25
    • 84981752234 scopus 로고
    • Direct measurement of the distribution of oxygen in soil aggregates and in columns of fine soil crumbs
    • Greenwood, D. J., and D. Goodman. 1967. Direct measurement of the distribution of oxygen in soil aggregates and in columns of fine soil crumbs. J. Soil Sci. 18:182-196.
    • (1967) J. Soil Sci , vol.18 , pp. 182-196
    • Greenwood, D.J.1    Goodman, D.2
  • 26
    • 0041326902 scopus 로고    scopus 로고
    • Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow
    • Hansel, C. M., S. G. Benner, J. Neiss, A. Dohnalkova, R. K. Kukkadapu, and S. Fendorf. 2003. Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow. Geochim. Cosmochim. Acta 67:2977-2992.
    • (2003) Geochim. Cosmochim. Acta , vol.67 , pp. 2977-2992
    • Hansel, C.M.1    Benner, S.G.2    Neiss, J.3    Dohnalkova, A.4    Kukkadapu, R.K.5    Fendorf, S.6
  • 27
    • 0001846402 scopus 로고
    • Soil aggregates as microhabitats of microorganisms
    • Hattori, T. 1988. Soil aggregates as microhabitats of microorganisms. Rep. Inst. Agric. Res. Tohoku Univ. 37:23-26.
    • (1988) Rep. Inst. Agric. Res. Tohoku Univ , vol.37 , pp. 23-26
    • Hattori, T.1
  • 28
    • 34547686149 scopus 로고    scopus 로고
    • Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices
    • He, J.-Z., J.-P. Shen, L.-M. Zhang, Y.-G. Zhu, Y.-M. Zheng, M.-G. Xu, and H. Di. 2007. Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ. Microbiol. 9:2364-2374.
    • (2007) Environ. Microbiol , vol.9 , pp. 2364-2374
    • He, J.-Z.1    Shen, J.-P.2    Zhang, L.-M.3    Zhu, Y.-G.4    Zheng, Y.-M.5    Xu, M.-G.6    Di, H.7
  • 29
    • 0037545523 scopus 로고    scopus 로고
    • Characterization of Fe(III) reduction by chlororespiring Anaeromyxobacter dehalogenans
    • He, Q., and R. A. Sanford. 2003. Characterization of Fe(III) reduction by chlororespiring Anaeromyxobacter dehalogenans. Appl. Environ. Microbiol. 69:2712-2718.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2712-2718
    • He, Q.1    Sanford, R.A.2
  • 31
    • 33846872201 scopus 로고    scopus 로고
    • Microbial processes in the vadose zone
    • Holden, P. A., and N. Fierer. 2005. Microbial processes in the vadose zone. Vadose Zone J. 4:1-21.
    • (2005) Vadose Zone J , vol.4 , pp. 1-21
    • Holden, P.A.1    Fierer, N.2
  • 32
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen, P. H. 2006. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microbiol. 72:1719-1728.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 33
    • 0027786620 scopus 로고
    • Unsaturated transport processes in undisturbed heterogeneous porous-media. 1. Inorganic contaminants
    • Jardine, P. M., G. K. Jacobs, and G. V. Wilson. 1993. Unsaturated transport processes in undisturbed heterogeneous porous-media. 1. Inorganic contaminants. Soil Sci. Soc. Am. J. 57:945-953.
    • (1993) Soil Sci. Soc. Am. J , vol.57 , pp. 945-953
    • Jardine, P.M.1    Jacobs, G.K.2    Wilson, G.V.3
  • 34
    • 0024800701 scopus 로고
    • Mechanisms of dissolved organic carbon adsorption on soil
    • Jardine, P. M., N. L. Weber, and J. F. McCarthy. 1989. Mechanisms of dissolved organic carbon adsorption on soil. Soil Sci. Soc. Am. J. 53:1378-1385.
    • (1989) Soil Sci. Soc. Am. J , vol.53 , pp. 1378-1385
    • Jardine, P.M.1    Weber, N.L.2    McCarthy, J.F.3
  • 35
    • 0026312853 scopus 로고
    • Components and microbial biomass content of size fractions in soils of contrasting aggregation
    • Jocteur-Monrozier, L., J. N. Ladd, A. W. Fitzpatrick, R. C. Foster, and M. Raupach. 1991. Components and microbial biomass content of size fractions in soils of contrasting aggregation. Geoderma 49:37-62.
    • (1991) Geoderma , vol.49 , pp. 37-62
    • Jocteur-Monrozier, L.1    Ladd, J.N.2    Fitzpatrick, A.W.3    Foster, R.C.4    Raupach, M.5
  • 36
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens, G., K. Lindstrom, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindstrom, K.2    Saano, A.3
  • 37
    • 0000416929 scopus 로고
    • Distribution of microorganisms, total biomass, and enzyme activities in different particles of brown soil
    • Kanazawa, S., and Z. Filip. 1986. Distribution of microorganisms, total biomass, and enzyme activities in different particles of brown soil. Microb. Ecol. 12:205-215.
    • (1986) Microb. Ecol , vol.12 , pp. 205-215
    • Kanazawa, S.1    Filip, Z.2
  • 38
    • 18944376202 scopus 로고    scopus 로고
    • Physiological and molecular characterization of a microbial community established in unsaturated, petroleum-contaminated soil
    • Kasai, Y., Y. Takahata, T. Hoaki, and K. Watanabe. 2005. Physiological and molecular characterization of a microbial community established in unsaturated, petroleum-contaminated soil. Environ. Microbiol. 7:806-818.
    • (2005) Environ. Microbiol , vol.7 , pp. 806-818
    • Kasai, Y.1    Takahata, Y.2    Hoaki, T.3    Watanabe, K.4
  • 39
    • 34249106390 scopus 로고    scopus 로고
    • High abundance of Crenarchaeota in a temperate acidic forest soil
    • Kemnitz, D., S. Kolb, and R. Conrad. 2007. High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol. Ecol. 60:442-448.
    • (2007) FEMS Microbiol. Ecol , vol.60 , pp. 442-448
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 40
    • 33846452179 scopus 로고    scopus 로고
    • Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated metanogens, and description of Methanogenium boonei sp. nov
    • Kendall, M. M., G. D. Wardlaw, C. F. Tang, A. S. Bonin, Y. Liu, and D. L. Valentine. 2007. Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated metanogens, and description of Methanogenium boonei sp. nov. Appl. Environ. Microbiol. 73:407-414.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 407-414
    • Kendall, M.M.1    Wardlaw, G.D.2    Tang, C.F.3    Bonin, A.S.4    Liu, Y.5    Valentine, D.L.6
  • 41
    • 0026080952 scopus 로고
    • gen. nov, sp. nov, an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr. Opin. Microbiol
    • Kishimoto, N., Y. Kosako, and T. Tano. 1991. Acidobacterium capsulatum gen. nov., sp. nov.: an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr. Opin. Microbiol. 22:1-7.
    • (1991) Acidobacterium capsulatum , vol.22 , pp. 1-7
    • Kishimoto, N.1    Kosako, Y.2    Tano, T.3
  • 42
    • 34247174463 scopus 로고    scopus 로고
    • Diversity of sulfate-reducing bacteria from an extreme hypersaline sediment, Great Salt Lake (Utah)
    • Kjeldsen, K. U., A. Loy, T. F. Jakobsen, T. R. Thomsen, M. Wagner, and K. Ingvorsen. 2007. Diversity of sulfate-reducing bacteria from an extreme hypersaline sediment, Great Salt Lake (Utah). FEMS Microbiol. Ecol. 60:287-298.
    • (2007) FEMS Microbiol. Ecol , vol.60 , pp. 287-298
    • Kjeldsen, K.U.1    Loy, A.2    Jakobsen, T.F.3    Thomsen, T.R.4    Wagner, M.5    Ingvorsen, K.6
  • 44
    • 0141438984 scopus 로고    scopus 로고
    • Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes
    • LaMontagne, M. G., J. P. Schimel, and P. A. Holden. 2003. Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes. Microb. Ecol. 46:216-227.
    • (2003) Microb. Ecol , vol.46 , pp. 216-227
    • LaMontagne, M.G.1    Schimel, J.P.2    Holden, P.A.3
  • 45
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackbrandt and M. Goodfellow ed, Wiley, Chichester, United Kingdom
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackbrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. Wiley, Chichester, United Kingdom.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 46
    • 0022849410 scopus 로고    scopus 로고
    • Leffelaar, P. A. 1986. Dynamics of partial anaerobiosis, denitrification, and water in a soil aggregate: experimental. Soil Sci. 142:352-365.
    • Leffelaar, P. A. 1986. Dynamics of partial anaerobiosis, denitrification, and water in a soil aggregate: experimental. Soil Sci. 142:352-365.
  • 47
    • 33947386687 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France)
    • Lehours, A.-C., P. Evans, C. Bardot, K. Joblin, and F. Gerard. 2007. Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France). Appl. Environ. Microbiol. 73:2016-2019.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2016-2019
    • Lehours, A.-C.1    Evans, P.2    Bardot, C.3    Joblin, K.4    Gerard, F.5
  • 49
    • 0028976873 scopus 로고
    • Denitrifiers and denitrifying activity in size fractions of a mollisol under permanent pasture and continuous cultivation
    • Lensi, R., A. Clays-Josserand, and L. J. Monrozier. 1995. Denitrifiers and denitrifying activity in size fractions of a mollisol under permanent pasture and continuous cultivation. Soil Biol. Biochem. 27:61-69.
    • (1995) Soil Biol. Biochem , vol.27 , pp. 61-69
    • Lensi, R.1    Clays-Josserand, A.2    Monrozier, L.J.3
  • 50
    • 0027937278 scopus 로고
    • gen. nov, spec, nov, a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch. Microbiol
    • Liesack, W., U. Kreft, and E. Stackbrandt. 1994. Holophaga foetida gen. nov., spec, nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch. Microbiol. 162:85-90.
    • (1994) Holophaga foetida , vol.162 , pp. 85-90
    • Liesack, W.1    Kreft, U.2    Stackbrandt, E.3
  • 52
    • 10444242668 scopus 로고    scopus 로고
    • Microarray and functional gene analysis of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages
    • Loy, A., K. Kusel, A. Lehner, H. L. Drake, and M. Wagner. 2004. Microarray and functional gene analysis of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages. Appl. Environ. Microbiol. 70:6998-7009.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 6998-7009
    • Loy, A.1    Kusel, K.2    Lehner, A.3    Drake, H.L.4    Wagner, M.5
  • 53
    • 0343503030 scopus 로고    scopus 로고
    • Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
    • Ludemann, H., I. Arth, and W. Liesack. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 66:754-762.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 754-762
    • Ludemann, H.1    Arth, I.2    Liesack, W.3
  • 55
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer, T. J., M. J. Church, L. T. Taylor, C. Preston, D. M. Karl, and E. F. DeLong. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ. Microbiol. 9:1162-1175.
    • (2007) Environ. Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 56
    • 33745792553 scopus 로고    scopus 로고
    • Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation
    • Nicol, G. W., D. Tscherko, L. Chang, U. Hammesfahr, and J. I. Prosser. 2006. Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation. Environ. Microbiol. 8:1382-1393.
    • (2006) Environ. Microbiol , vol.8 , pp. 1382-1393
    • Nicol, G.W.1    Tscherko, D.2    Chang, L.3    Hammesfahr, U.4    Prosser, J.I.5
  • 57
    • 14344252220 scopus 로고    scopus 로고
    • Primary succession of soil Crenarchaeota across a receding glacier foreland
    • Nicol, G. W., D. Tscherko, T. M. Embley, and J. I. Prosser. 2005. Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ. Microbiol. 7:337-347.
    • (2005) Environ. Microbiol , vol.7 , pp. 337-347
    • Nicol, G.W.1    Tscherko, D.2    Embley, T.M.3    Prosser, J.I.4
  • 58
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter, T., D. Selezi, A. Quaiser, L. Bonch-Osmolovskaya, and C. Schleper. 2003. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5:787-797.
    • (2003) Environ. Microbiol , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 59
    • 0033754312 scopus 로고    scopus 로고
    • Marine planktonic archaea take up amino acids
    • Ouverney, C. C., and J. A. Fuhrman. 2000. Marine planktonic archaea take up amino acids. Appl. Environ. Microbiol. 66:4829-4833.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 4829-4833
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 60
    • 33747341311 scopus 로고    scopus 로고
    • Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors
    • Park, H.-D., G. F. Wells, H. Bae, C. S. Criddle, and C. A. Francis. 2006. Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors. Appl. Environ. Microbiol. 72:5643-5647.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5643-5647
    • Park, H.-D.1    Wells, G.F.2    Bae, H.3    Criddle, C.S.4    Francis, C.A.5
  • 61
    • 0036803181 scopus 로고    scopus 로고
    • Identification of novel Crenarchaeota and Euryarchaeota clusters associated with different depth layers of a forest soil
    • Pesaro, M., and F. Widmer. 2002. Identification of novel Crenarchaeota and Euryarchaeota clusters associated with different depth layers of a forest soil. FEMS Microbiol. Ecol. 42:89-98.
    • (2002) FEMS Microbiol. Ecol , vol.42 , pp. 89-98
    • Pesaro, M.1    Widmer, F.2
  • 62
    • 2142853093 scopus 로고    scopus 로고
    • Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)
    • Petrie, L., N. N. North, S. L. Dollhopf, D. L. Balkwill, and J. E. Kostka. 2003. Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI). Appl. Environ. Microbiol. 69:7467-7479.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 7467-7479
    • Petrie, L.1    North, N.N.2    Dollhopf, S.L.3    Balkwill, D.L.4    Kostka, J.E.5
  • 63
    • 0030298236 scopus 로고    scopus 로고
    • Dissimialtory nitrite-reductase provides a competitive advantage to Pseudomonas sp. RTC01 to colonise the centre of soil aggregates
    • Phillipot, L., P. Renault, J. Sierra, C. Henault, A. Clays-Josserand, C. Chenu, R. Chaussod, and R. Lensi. 1996. Dissimialtory nitrite-reductase provides a competitive advantage to Pseudomonas sp. RTC01 to colonise the centre of soil aggregates. FEMS Microbiol. Ecol. 21:175-185.
    • (1996) FEMS Microbiol. Ecol , vol.21 , pp. 175-185
    • Phillipot, L.1    Renault, P.2    Sierra, J.3    Henault, C.4    Clays-Josserand, A.5    Chenu, C.6    Chaussod, R.7    Lensi, R.8
  • 64
    • 0033986750 scopus 로고    scopus 로고
    • A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapated phenotypes and analysis of community DNA fingerprints
    • Ranjard, L., S. Nazaret, F. Gourbiere, J. Thioulouse, P. Linet, and A. Richaume. 2000. A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapated phenotypes and analysis of community DNA fingerprints. FEMS Microbiol. Ecol. 31:107-115.
    • (2000) FEMS Microbiol. Ecol , vol.31 , pp. 107-115
    • Ranjard, L.1    Nazaret, S.2    Gourbiere, F.3    Thioulouse, J.4    Linet, P.5    Richaume, A.6
  • 65
    • 0034803155 scopus 로고    scopus 로고
    • Quantitative and qualitative microscale distribution of bacteria in soil
    • Ranjard, L., and A. Richaume. 2001. Quantitative and qualitative microscale distribution of bacteria in soil. Res. Microbiol. 152:707-716.
    • (2001) Res. Microbiol , vol.152 , pp. 707-716
    • Ranjard, L.1    Richaume, A.2
  • 66
    • 0031470994 scopus 로고    scopus 로고
    • Response of soil bacteria to Hg(II) in relation to characteristics and cell location
    • Ranjard, L., A. Richaume, L. Jocteur-Monrozier, and S. Nazaret. 1997. Response of soil bacteria to Hg(II) in relation to characteristics and cell location. FEMS Microbiol. Ecol. 24:321-331.
    • (1997) FEMS Microbiol. Ecol , vol.24 , pp. 321-331
    • Ranjard, L.1    Richaume, A.2    Jocteur-Monrozier, L.3    Nazaret, S.4
  • 68
    • 0028165543 scopus 로고
    • Modeling oxygen diffusion in aggregated soils. I. Anaerobiosis inside the aggregates
    • Renault, P., and P. Stengel. 1994. Modeling oxygen diffusion in aggregated soils. I. Anaerobiosis inside the aggregates. Soil Sci. Soc. Am. J. 58:1017-1023.
    • (1994) Soil Sci. Soc. Am. J , vol.58 , pp. 1017-1023
    • Renault, P.1    Stengel, P.2
  • 69
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe, J.-H., K.-P. Witzel, and W. Liesack. 1997. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63:4704-4712.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.-H.1    Witzel, K.-P.2    Liesack, W.3
  • 70
    • 33644949502 scopus 로고    scopus 로고
    • Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer
    • Santoro, A. E., A. B. Boehm, and C. A. Francis. 2006. Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer. Appl. Environ. Microbiol. 72:2102-2109.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2102-2109
    • Santoro, A.E.1    Boehm, A.B.2    Francis, C.A.3
  • 71
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 72
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss, P. D., B. R. Larget, and J. Handelsman. 2004. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl. Environ. Microbiol. 70:5485-5492.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 74
    • 0035462376 scopus 로고    scopus 로고
    • Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment
    • Sessitsch, A., A. Weilharter, M. H. Gerzabek, H. Kirchmann, and E. Kandeler. 2001. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Appl. Environ. Microbiol. 67:4215-4224.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 4215-4224
    • Sessitsch, A.1    Weilharter, A.2    Gerzabek, M.H.3    Kirchmann, H.4    Kandeler, E.5
  • 75
    • 0022061874 scopus 로고
    • Direct measurement of oxygen profiles and denitfication rates in soil aggregates
    • Sexstone, A. J., N. P. Revsbech, T. B. Parkin, and J. M. Tiedje. 1985. Direct measurement of oxygen profiles and denitfication rates in soil aggregates. Soil Sci. Soc. Am. J. 49:645-651.
    • (1985) Soil Sci. Soc. Am. J , vol.49 , pp. 645-651
    • Sexstone, A.J.1    Revsbech, N.P.2    Parkin, T.B.3    Tiedje, J.M.4
  • 76
    • 33846524416 scopus 로고    scopus 로고
    • Shelobolina, E. S., K. P. Nevin, J. D. Blakeney-Hayward, C. V. Johnsen, T. W. Plaia, P. Krader, T. Woodard, D. E. Holmes, C. G. VanPraagh, and D. R. Lovley. 2007. Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov. sp. nov., isolated from subsurface kaolin lenses. Int. J. Syst. Evol. Microbiol. 57:126-135.
    • Shelobolina, E. S., K. P. Nevin, J. D. Blakeney-Hayward, C. V. Johnsen, T. W. Plaia, P. Krader, T. Woodard, D. E. Holmes, C. G. VanPraagh, and D. R. Lovley. 2007. Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov. sp. nov., isolated from subsurface kaolin lenses. Int. J. Syst. Evol. Microbiol. 57:126-135.
  • 77
    • 0035198111 scopus 로고    scopus 로고
    • Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments
    • Stein, L. Y., M. T. La Duc, T. J. Grundl, and K. H. Nealson. 2001. Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments. Environ. Microbiol. 3:10-18.
    • (2001) Environ. Microbiol , vol.3 , pp. 10-18
    • Stein, L.Y.1    La Duc, M.T.2    Grundl, T.J.3    Nealson, K.H.4
  • 78
    • 0032953321 scopus 로고    scopus 로고
    • Effect of toxic metals on indigenous soil b-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria
    • Stephen, J. R., Y.-J. Chang, S. J. MacNaughton, G. A. Kowalchuk, K. T. Leung, C. A. Flemming, and D. C. White. 1999. Effect of toxic metals on indigenous soil b-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria. Appl. Environ. Microbiol. 65:95-101.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 95-101
    • Stephen, J.R.1    Chang, Y.-J.2    MacNaughton, S.J.3    Kowalchuk, G.A.4    Leung, K.T.5    Flemming, C.A.6    White, D.C.7
  • 81
    • 32944469326 scopus 로고    scopus 로고
    • Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic
    • Teira, E., H. van Aken, C. Veth, and G. J. Herndl. 2006. Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic. Limnol. Oceanogr. 51:60-69.
    • (2006) Limnol. Oceanogr , vol.51 , pp. 60-69
    • Teira, E.1    van Aken, H.2    Veth, C.3    Herndl, G.J.4
  • 82
    • 0036270789 scopus 로고    scopus 로고
    • Microbial diversity and function in soil: From genes to ecosystems
    • Torsvik, V., and L. Ovreas. 2002. Microbial diversity and function in soil: from genes to ecosystems. Curr. Opin. Microbiol. 5:240-245.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 240-245
    • Torsvik, V.1    Ovreas, L.2
  • 83
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch, A. H., S. Leininger, A. Kletzin, S. C. Schuster, H.-P. Klenk, and C. Schleper. 2005. Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7:1985-1995.
    • (2005) Environ. Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.-P.5    Schleper, C.6
  • 84
    • 0037271271 scopus 로고    scopus 로고
    • A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil
    • Treves, D. S., B. Xia, and J. M. Tiedje. 2003. A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil. Microb. Ecol. 45:20-28.
    • (2003) Microb. Ecol , vol.45 , pp. 20-28
    • Treves, D.S.1    Xia, B.2    Tiedje, J.M.3
  • 85
    • 27444435260 scopus 로고    scopus 로고
    • Physiological and molecular characterisation of microbial communities associated with different water-stable aggregate size classes
    • Vaisanen, R. K., M. S. Roberts, J. L. Garland, S. D. Frey, and L. A. Dawson. 2005. Physiological and molecular characterisation of microbial communities associated with different water-stable aggregate size classes. Soil Biol. Biochem. 37:2007-2016.
    • (2005) Soil Biol. Biochem , vol.37 , pp. 2007-2016
    • Vaisanen, R.K.1    Roberts, M.S.2    Garland, J.L.3    Frey, S.D.4    Dawson, L.A.5
  • 86
    • 34247899082 scopus 로고    scopus 로고
    • Sulfate-reducing prokaryotic communities in two deep hypersaline anoxic basins in the Eastern Mediterranean deep sea
    • van der Wielen, P. W. J. J., and S. K. Heijs. 2007. Sulfate-reducing prokaryotic communities in two deep hypersaline anoxic basins in the Eastern Mediterranean deep sea. Environ. Microbiol. 9:1335-1340.
    • (2007) Environ. Microbiol , vol.9 , pp. 1335-1340
    • van der Wielen, P.W.J.J.1    Heijs, S.K.2
  • 87
    • 11144354360 scopus 로고    scopus 로고
    • Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, D. Y. Wu, I. Paulsen, K. E. Nelson, W. Nelson, D. E. Fouts, S. Levy, A. H. Knap, M. W. Lomas, K. Nealson, O. White, J. Peterson, J. Hoffman, R. Parsons, H. Baden-Tillson, C. Pfannkoch, Y. H. Rogers, and H. O. Smith. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
    • Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, D. Y. Wu, I. Paulsen, K. E. Nelson, W. Nelson, D. E. Fouts, S. Levy, A. H. Knap, M. W. Lomas, K. Nealson, O. White, J. Peterson, J. Hoffman, R. Parsons, H. Baden-Tillson, C. Pfannkoch, Y. H. Rogers, and H. O. Smith. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
  • 88
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner, M., A. J. Roger, J. L. Flax, G. A. Brusseau, and D. A. Stahl. 1998. Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J. Bacteriol. 180:2975-2982.
    • (1998) J. Bacteriol , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 89
    • 33846134052 scopus 로고    scopus 로고
    • Communities of Archaea and Bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps and evidence of ammonia-oxidizing Crenarchaeota
    • Weidler, G. W., M. Dornmayr-Pfaffenhuemer, F. W. Gerbl, W. Heinen, and H. Stan-Lotter. 2007. Communities of Archaea and Bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps and evidence of ammonia-oxidizing Crenarchaeota. Appl. Environ. Microbiol. 73:259-270.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 259-270
    • Weidler, G.W.1    Dornmayr-Pfaffenhuemer, M.2    Gerbl, F.W.3    Heinen, W.4    Stan-Lotter, H.5
  • 90
    • 0028784056 scopus 로고
    • Role of pore size location in determining bacterial activity during predation by protozoa in soil
    • Wright, D. A., K. Killham, L. A. Glover, and J. I. Prosser. 1995. Role of pore size location in determining bacterial activity during predation by protozoa in soil. Appl. Environ. Microbiol. 61:3537-3543.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 3537-3543
    • Wright, D.A.1    Killham, K.2    Glover, L.A.3    Prosser, J.I.4
  • 94
    • 27144525864 scopus 로고    scopus 로고
    • Zimmerman, J., J. M. Gonzalez, C. Saiz-Jimenez, and W. Ludwig. 2005. Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analysis. Geomicrob. J. 22:379-388.
    • Zimmerman, J., J. M. Gonzalez, C. Saiz-Jimenez, and W. Ludwig. 2005. Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analysis. Geomicrob. J. 22:379-388.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.