Towards a quantitative understanding of stem cell-niche interaction: Experiments, models, and technologies

Blood Cells, Molecules, and Diseases

Volumn 46, Issue 4, 2011, Pages 308-317

  Roeder, Ingo ^a   Loeffler, Markus ^b   Glauche, Ingmar ^a  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^b UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOENGINEERING; BIOINFORMATICS; BIOPHYSICS; BLOOD; CELL FUNCTION; CELL HETEROGENEITY; COCULTURE; CONSENSUS DEVELOPMENT; HEMATOPOIETIC STEM CELL; HIGH THROUGHPUT SCREENING; HUMAN; IN VITRO STUDY; INTESTINE CRYPT; LUNG; LYMPH; MATHEMATICAL MODEL; MOLECULAR BIOLOGY; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REGULATORY MECHANISM; SIGNAL TRANSDUCTION; STEM CELL NICHE; STROMA CELL; SYSTEMS BIOLOGY; T LYMPHOCYTE; THEORETICAL MODEL; TISSUE SPECIFICITY;

HUMANS; MODELS, BIOLOGICAL; RESEARCH DESIGN; STEM CELL NICHE; TECHNOLOGY;

EID: 79953701610     PISSN: 10799796     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bcmd.2011.03.001     Document Type: Article

References (71)

1. Wikipedia: (May 2010). http://en.wikipedia.org/wiki/Stem_cell_niche.
2. Moore K.A., Lemischka I.R. Stem cells and their niches. Science 2006, 311:1880-1885.
3. Scadden D.T. The stem-cell niche as an entity of action. Nature 2006, 441:1075-1079.
4. Calvi L.M., Adams G.B., Weibrecht K.W., et al. Osteoblastic cells regulate the haematopoietic stem cell niche. Nature 2003, 425:841-846.
5. Trentin J. Influence of hematopoietic organ stroma (hematopoieticinductive microenvironment) on stem cell differentiation 1970, 161-168. Appleton-Century-Crofts, New York. A.S. Gordon (Ed.).
6. Trentin J.J. Determination of bone marrow stem cell differentiation by stromal hemopoietic inductive microenvironments (HIM). Am. J. Pathol. 1971, 65:621-628.
7. Schofield R. The relationship between the spleen colony-forming cell and the haemopoietic stem cell. Blood Cells 1978, 4:7-25.
8. Jones D.L., Wagers A.J. No place like home: anatomy and function of the stem cell niche. Nat. Rev. Mol. Cell Biol. 2008, 9:11-21.
9. Cross M., Alt R., Niederwieser D. The case for a metabolic stem cell niche. Cells Tissues Organs 2008, 188:150-159.
10. Nilsson S.K., Johnston H.M., Coverdale J.A. Spatial localization of transplanted hemopoietic stem cells: inferences for the localization of stem cell niches. Blood 2001, 97:2293-2299.
11. Kiel M.J., Yilmaz O.H., Iwashita T., et al. SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells. Cell 2005, 121:1109-1121.
12. Lo Celso C., Fleming H.E., Wu J.W., et al. Live-animal tracking of individual haematopoietic stem/progenitor cells in their niche. Nature 2009, 457:92-96.
13. Potten C.S., Roberts S.A., Chwalinski S., Loeffler M., Paulus U. Scoring mitotic activity in longitudinal sections of crypts of the small intestine. Cell Tissue Kinet. 1988, 21:231-246.
14. Al-Dewachi H.S., Wright N.A., Appleton D.R., Watson A.J. Cell population kinetics in the mouse jejunal crypt. Virchows Arch. B Cell Pathol. 1975, 18:225-242.
15. Potten C.S., Booth C., Pritchard D.M. The intestinal epithelial stem cell: the mucosal governor. Int. J. Exp. Pathol. 1997, 78:219-243.
16. Lopez-Garcia C., Klein A.M., Simons B.D., Winton D.J. Intestinal stem cell replacement follows a pattern of neutral drift. Science 2010, 330:822-825.
17. Buske P., Galle J., Barker N., et al. A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt. PLoS Comput. Biol. 2011, 7:e1001045.
18. Arai F., Hirao A., Ohmura M., et al. Tie2/angiopoietin-1 signaling regulates hematopoietic stem cell quiescence in the bone marrow niche. Cell 2004, 118:149-161.
19. Sipkins D.A., Wei X., Wu J.W., et al. In vivo imaging of specialized bone marrow endothelial microdomains for tumour engraftment. Nature 2005, 435:969-973.
20. Yoshihara H., Arai F., Hosokawa K., et al. Thrombopoietin/MPL signaling regulates hematopoietic stem cell quiescence and interaction with the osteoblastic niche. Cell Stem Cell 2007, 1:685-697.
21. Driessen R.L., Johnston H.M., Nilsson S.K. Membrane-bound stem cell factor is a key regulator in the initial lodgment of stem cells within the endosteal marrow region. Exp. Hematol. 2003, 31:1284-1291.
22. Cobas M., Wilson A., Ernst B., et al. Beta-catenin is dispensable for hematopoiesis and lymphopoiesis. J. Exp. Med. 2004, 199:221-229.
23. Qian Z., Chen L., Fernald A.A., Williams B.O., Le Beau M.M. A critical role for Apc in hematopoietic stem and progenitor cell survival. J. Exp. Med. 2008, 205:2163-2175.
24. Reya T., Clevers H. Wnt signalling in stem cells and cancer. Nature 2005, 434:843-850.
25. Renstrom J., Istvanffy R., Gauthier K., et al. Secreted frizzled-related protein 1 extrinsically regulates cycling activity and maintenance of hematopoietic stem cells. Cell Stem Cell 2009, 5:157-167.
26. Goessling W., North T.E., Loewer S., et al. Genetic interaction of PGE2 and Wnt signaling regulates developmental specification of stem cells and regeneration. Cell 2009, 136:1136-1147.
27. Trowbridge J.J., Xenocostas A., Moon R.T., Bhatia M. Glycogen synthase kinase-3 is an in vivo regulator of hematopoietic stem cell repopulation. Nat. Med. 2006, 12:89-98.
28. Fleming H.E., Janzen V., Lo Celso C., et al. Wnt signaling in the niche enforces hematopoietic stem cell quiescence and is necessary to preserve self-renewal in vivo. Cell Stem Cell 2008, 2:274-283.
29. Zhang J., Niu C., Ye L., et al. Identification of the haematopoietic stem cell niche and control of the niche size. Nature 2003, 425:836-841.
30. Nilsson S.K., Johnston H.M., Whitty G.A., et al. Osteopontin, a key component of the hematopoietic stem cell niche and regulator of primitive hematopoietic progenitor cells. Blood 2005, 106:1232-1239.
31. Gottschling S., Saffrich R., Seckinger A., et al. Human mesenchymal stromal cells regulate initial self-renewing divisions of hematopoietic progenitor cells by a beta1-integrin-dependent mechanism. Stem Cells 2007, 25:798-806.
32. Lichtman M.A. The ultrastructure of the hemopoietic environment of the marrow: a review. Exp. Hematol. 1981, 9:391-410.
33. Nilsson S.K., Debatis M.E., Dooner M.S., et al. Immunofluorescence characterization of key extracellular matrix proteins in murine bone marrow in situ. J. Histochem. Cytochem. 1998, 46:371-377.
34. Engler A.J., Sen S., Sweeney H.L., Discher D.E. Matrix elasticity directs stem cell lineage specification. Cell 2006, 126:677-689.
35. Kurth I., Franke K., Pompe T., Bornhauser M., Werner C. Hematopoietic stem and progenitor cells in adhesive microcavities. Integr Biol Camb 2009, 1:427-434.
36. Lutolf M.P., Doyonnas R., Havenstrite K., Koleckar K., Blau H.M. Perturbation of single hematopoietic stem cell fates in artificial niches. Integr Biol Camb 2009, 1:59-69.
37. Connelly J.T., Gautrot J.E., Trappmann B., et al. Actin and serum response factor transduce physical cues from the microenvironment to regulate epidermal stem cell fate decisions. Nat. Cell Biol. 2010, 12:711-718.
38. McBeath R., Pirone D.M., Nelson C.M., Bhadriraju K., Chen C.S. Cell shape, cytoskeletal tension, and RhoA regulate stem cell lineage commitment. Dev. Cell 2004, 6:483-495.
39. Potten C.S., Loeffler M. Stem cells: attributes, cycles, spirals, pitfalls and uncertainties. Lessons crypt. Dev. 1990, 110:1001-1020.
40. Loeffler M., Roeder I. Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models-a conceptual approach. Cells Tissues Organs 2002, 171:8-26.
41. Essers M.A., Offner S., Blanco-Bose W.E., et al. IFNalpha activates dormant haematopoietic stem cells in vivo. Nature 2009, 458:904-908.
42. Roeder I., Loeffler M. A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity. Exp. Hematol. 2002, 30:853-861.
43. Ott M.G., Schmidt M., Schwarzwaelder K., et al. Correction of X-linked chronic granulomatous disease by gene therapy, augmented by insertional activation of MDS1-EVI1, PRDM16 or SETBP1. Nat. Med. 2006, 12:401-409.
44. Giordano F.A., Sorg U.R., Appelt J.U., et al. Clonal inventory screens uncover monoclonality following serial transplantation of MGMTP140K transduced stem cells and dose-intense chemotherapy. Hum. Gene Ther. 2011.
45. Hoffmann M., Chang H.H., Huang S., et al. Noise-driven stem cell and progenitor population dynamics. PLoS ONE 2008, 3:e2922.
46. Krinner A., Hoffmann M., Loeffler M., Drasdo D., Galle J. Individual fates of mesenchymal stem cells in vitro. BMC Syst. Biol. 2010, 4:73.
47. Roeder I., Lorenz R. Asymmetry of stem cell fate and the potential impact of the niche observations, simulations, and interpretations. Stem Cell Rev. 2006, 2:171-180.
48. Dexter T.M., Wright E.G., Krizsa F., Lajtha L.G. Regulation of haemopoietic stem cell proliferation in long term bone marrow cultures. Biomedicine 1977, 27:344-349.
49. Coulombel L., Eaves A.C., Eaves C.J. Enzymatic treatment of long-term human marrow cultures reveals the preferential location of primitive hemopoietic progenitors in the adherent layer. Blood 1983, 62:291-297.
50. Ploemacher R.E., Sluijs J.P.v.d., Voerman J.S., Brons N.H. An in vitro limiting-dilution assay of long-term repopulating hematopoietic stem cells in the mouse. Blood 1989, 74:2755-2763.
51. Hackney D.D., Stock M.F., Moore J., Patterson R.A. Modulation of kinesin half-site ADP release and kinetic processivity by a spacer between the head groups. Biochemistry 2003, 42:12011-12018.
52. Kobel S., Lutolf M. High-throughput methods to define complex stem cell niches. Biotechniques 2010, 48. ix-xxii.
53. Peerani R., Rao B.M., Bauwens C., et al. Niche-mediated control of human embryonic stem cell self-renewal and differentiation. EMBO J. 2007, 26:4744-4755.
54. Peerani R., Bauwens C., Kumacheva E., Zandstra P.W. Patterning mouse and human embryonic stem cells using micro-contact printing. Meth. Mol. Biol. 2009, 482:21-33.
55. Peerani R., Onishi K., Mahdavi A., Kumacheva E., Zandstra P.W. Manipulation of signaling thresholds in "engineered stem cell niches" identifies design criteria for pluripotent stem cell screens. PLoS ONE 2009, 4:e6438.
56. Lu R., Markowetz F., Unwin R.D., et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 2009, 462:358-362.
57. Peerani R., Zandstra P.W. Enabling stem cell therapies through synthetic stem cell-niche engineering. J. Clin. Invest. 2010, 120:60-70.
58. Eilken H.M., Nishikawa S., Schroeder T. Continuous single-cell imaging of blood generation from haemogenic endothelium. Nature 2009, 457:896-900.
59. Rieger M.A., Schroeder T. Instruction of lineage choice by hematopoietic cytokines. Cell Cycle 2009, 8:4019-4020.
60. Tajbakhsh S. Skeletal muscle stem cells in developmental versus regenerative myogenesis. J. Intern. Med. 2009, 266:372-389.
61. Jory A., Le Roux I., Gayraud-Morel B., et al. Numb promotes an increase in skeletal muscle progenitor cells in the embryonic somite. Stem Cells 2009, 27:2769-2780.
62. Janes K.A., Kelly J.R., Gaudet S., et al. Cue-signal-response analysis of TNF-induced apoptosis by partial least squares regression of dynamic multivariate data. J. Comput. Biol. 2004, 11:544-561.
63. Aldridge B.B., Saez-Rodriguez J., Muhlich J.L., Sorger P.K., Lauffenburger D.A. Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling. PLoS Comput. Biol. 2009, 5:e1000340.
64. Morris M.K., Saez-Rodriguez J., Sorger P.K., Lauffenburger D.A. Logic-based models for the analysis of cell signaling networks. Biochemistry 2010, 49:3216-3224.
65. Morris M.K., Saez-Rodriguez J., Clarke D.C., Sorger P.K., Lauffenburger D.A. Training signaling pathway maps to biochemical data with constrained fuzzy logic. PLoS Comput. Biol. 2011, 7:e1001099.
66. MacArthur B.D., Lachmann A., Lemischka I.R., Ma'ayan A. GATE: software for the analysis and visualization of high-dimensional time series expression data. Bioinformatics 2010, 26:143-144.
67. Binder H., Wirth H., Galle J. Gene expression density profiles characterize modes of genomic regulation: theory and experiment. J. Biotechnol. 2010, 149:98-114.
68. Wilson A., Laurenti E., Oser G., et al. Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. Cell 2008, 135:1118-1129.
69. van der Wath R.C., Wilson A., Laurenti E., Trumpp A., Lio P. Estimating dormant and active hematopoietic stem cell kinetics through extensive modeling of bromodeoxyuridine label-retaining cell dynamics. PLoS ONE 2009, 4:e6972.
70. Glauche I., Moore K., Thielecke L., et al. Stem cell proliferation and quiescence-two sides of the same coin. PLoS Comput. Biol. 2009, 5:e1000447.
71. Kirouac D.C., Ito C., Csaszar E., et al. Dynamic interaction networks in a hierarchically organized tissue. Mol. Syst. Biol. 2010, 6:417.