메뉴 건너뛰기




Volumn 6577 LNBI, Issue , 2011, Pages 222-237

A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; MOLECULAR BIOLOGY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OLIGOMERS;

EID: 79953184264     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-20036-6_21     Document Type: Conference Paper
Times cited : (1)

References (31)
  • 4
    • 46249083761 scopus 로고    scopus 로고
    • Assembly reflects evolution of protein complexes
    • Levy, E.D., Erba, E.B., Robinson, C.V., Teichmann, S.A.: Assembly reflects evolution of protein complexes. Nature 453, 1262–1265 (2008), 10.1038/nature06942
    • (2008) Nature , vol.453 , pp. 1262-1265
    • Levy, E.D.1    Erba, E.B.2    Robinson, C.V.3    Teichmann, S.A.4
  • 5
    • 3042621274 scopus 로고    scopus 로고
    • The progress of membrane protein structure determination
    • White, S.H.: The progress of membrane protein structure determination. Protein Science 13, 1948–1949 (2004)
    • (2004) Protein Science , vol.13 , pp. 1948-1949
    • White, S.H.1
  • 6
    • 33845925822 scopus 로고    scopus 로고
    • A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers
    • Potluri, S., Yan, A.K., Donald, B.R., Bailey-Kellogg, C.: A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers. Protein Science 16, 69–81 (2007)
    • (2007) Protein Science , vol.16 , pp. 69-81
    • Potluri, S.1    Yan, A.K.2    Donald, B.R.3    Bailey-Kellogg, C.4
  • 7
    • 0000165109 scopus 로고
    • Isotope-filtered 2D NMR of a protein-peptide complex: Study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin
    • Ikura, M., Bax, A.: Isotope-filtered 2D NMR of a protein-peptide complex: study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin. Journal of the American Chemical Society 114, 2433–2440 (1992)
    • (1992) Journal of the American Chemical Society , vol.114 , pp. 2433-2440
    • Ikura, M.1    Bax, A.2
  • 9
    • 33846263054 scopus 로고    scopus 로고
    • A polynomial-time algorithm for de novo protein backbone structure determination from nuclear magnetic resonance data
    • Wang, L., Mettu, R.R., Donald, B.R.: A polynomial-time algorithm for de novo protein backbone structure determination from nuclear magnetic resonance data. Journal of Computational Biology 13, 1267–1288 (2006)
    • (2006) Journal of Computational Biology , vol.13 , pp. 1267-1288
    • Wang, L.1    Mettu, R.R.2    Donald, B.R.3
  • 10
    • 33748271512 scopus 로고    scopus 로고
    • Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing
    • Potluri, S., Yan, A.K., Chou, J.J., Donald, B.R., Bailey-Kellogg, C.: Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing. Proteins: Structure, Function, and Bioinformatics 65, 203–219 (2006)
    • (2006) Proteins: Structure, Function, and Bioinformatics , vol.65 , pp. 203-219
    • Potluri, S.1    Yan, A.K.2    Chou, J.J.3    Donald, B.R.4    Bailey-Kellogg, C.5
  • 11
    • 43049118964 scopus 로고    scopus 로고
    • RDC-assisted modeling of symmetric protein homo-oligomers
    • Wang, X., Bansal, S., Jiang, M., Prestegard, J.H.: RDC-assisted modeling of symmetric protein homo-oligomers. Protein Science 17, 899–907 (2008)
    • (2008) Protein Science , vol.17 , pp. 899-907
    • Wang, X.1    Bansal, S.2    Jiang, M.3    Prestegard, J.H.4
  • 12
    • 2642620234 scopus 로고    scopus 로고
    • AmbiPack: A systematic algorithm for packing of macromolecular structures with ambiguous distance constraints
    • Wang, C.S.E., Lozano-Pérez, T., Tidor, B.: AmbiPack: A systematic algorithm for packing of macromolecular structures with ambiguous distance constraints. Proteins: Structure, Function, and Genetics 32, 26–42 (1998)
    • (1998) Proteins: Structure, Function, and Genetics , vol.32 , pp. 26-42
    • Wang, C.S.E.1    Lozano-Pérez, T.2    Tidor, B.3
  • 15
    • 0034057133 scopus 로고    scopus 로고
    • Unraveling the symmetry ambiguity in a hexamer: Calculation of the R6 human insulin structure
    • O’Donoghue, S.I., Chang, X., Abseher, R., Nilges, M., Led, J.J.: Unraveling the symmetry ambiguity in a hexamer: Calculation of the R6 human insulin structure. Journal of Biomolecular NMR 16(2), 93–108 (2000), 10.1023/A:1008323819099
    • (2000) Journal of Biomolecular NMR , vol.16 , Issue.2 , pp. 93-108
    • O’Donoghue, S.I.1    Chang, X.2    Abseher, R.3    Nilges, M.4    Led, J.J.5
  • 18
    • 0141569110 scopus 로고    scopus 로고
    • A protein contortionist: Core mutations of GB1 that induce dimerization and domain swapping
    • Byeon, I.J.L., Louis, J.M., Gronenborn, A.M.: A protein contortionist: Core mutations of GB1 that induce dimerization and domain swapping. Journal of Molecular Biology 333, 141–152 (2003)
    • (2003) Journal of Molecular Biology , vol.333 , pp. 141-152
    • Byeon, I.J.L.1    Louis, J.M.2    Gronenborn, A.M.3
  • 19
    • 67650473269 scopus 로고    scopus 로고
    • Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints
    • Donald, B.R., Martin, J.: Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints. Progress in Nuclear Magnetic Resonance Spectroscopy 55, 101–127 (2009)
    • (2009) Progress in Nuclear Magnetic Resonance Spectroscopy , vol.55 , pp. 101-127
    • Donald, B.R.1    Martin, J.2
  • 20
    • 0033631450 scopus 로고    scopus 로고
    • Molecular symmetry as an aid to geometry determination in ligand protein complexes
    • Al-Hashimi, H.M., Bolon, P.J., Prestegard, J.H.: Molecular symmetry as an aid to geometry determination in ligand protein complexes. Journal of Magnetic Resonance 142, 153–158 (2000)
    • (2000) Journal of Magnetic Resonance , vol.142 , pp. 153-158
    • Al-Hashimi, H.M.1    Bolon, P.J.2    Prestegard, J.H.3
  • 21
    • 0034725409 scopus 로고    scopus 로고
    • Determination of the relative orientation of the two halves of the domain-swapped dimer of cyanovirin-N in solution using dipolar couplings and rigid body minimization
    • Bewley, C.A., Clore, G.M.: Determination of the relative orientation of the two halves of the domain-swapped dimer of cyanovirin-N in solution using dipolar couplings and rigid body minimization. Journal of the American Chemical Society 122, 6009–6016 (2000)
    • (2000) Journal of the American Chemical Society , vol.122 , pp. 6009-6016
    • Bewley, C.A.1    Clore, G.M.2
  • 23
    • 38749106195 scopus 로고    scopus 로고
    • Structure and mechanism of the M2 proton channel of influenza A virus
    • Schnell, J.R., Chou, J.J.: Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451(7178), 591–595 (2008), 10.1038/nature06531
    • (2008) Nature , vol.451 , Issue.7178 , pp. 591-595
    • Schnell, J.R.1    Chou, J.J.2
  • 24
    • 71449091133 scopus 로고    scopus 로고
    • Solution structure and functional analysis of the influenza B proton channel
    • Wang, J., Pielak, R.M., McClintock, M.A., Chou, J.J.: Solution structure and functional analysis of the influenza B proton channel. Nat. Struct. Mol. Biol. 16, 1267–1271 (2009), 10.1038/nsmb.1707
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1267-1271
    • Wang, J.1    Pielak, R.M.2    McClintock, M.A.3    Chou, J.J.4
  • 25
  • 28
    • 0001798952 scopus 로고    scopus 로고
    • Arrangements
    • Goodman, J.E., O’Rourke, J. (eds.), CRC Press, Inc., Boca Raton
    • Halperin, D.: Arrangements. In: Goodman, J.E., O’Rourke, J. (eds.) Handbook of Discrete and Computational Geometry, 2nd edn., pp. 529–562. CRC Press, Inc., Boca Raton (1997)
    • (1997) Handbook of Discrete and Computational Geometry, 2Nd Edn , pp. 529-562
    • Halperin, D.1
  • 29
    • 84896756067 scopus 로고    scopus 로고
    • Two-dimensional arrangements in CGAL and adaptive point location for parametric curves
    • Näher, S., Wagner, D. (eds.), Springer, Heidelberg
    • Hanniel, I., Halperin, D.: Two-dimensional arrangements in CGAL and adaptive point location for parametric curves. In: Näher, S., Wagner, D. (eds.) WAE 2000. LNCS, vol. 1982, pp. 171–182. Springer, Heidelberg (2001)
    • (2001) WAE 2000. LNCS , vol.1982 , pp. 171-182
    • Hanniel, I.1    Halperin, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.