-
2
-
-
0037625160
-
Gene segment selection in V(D)J recombination: Accessibility and beyond
-
Krangel, M. S. 2003. Gene segment selection in V(D)J recombination: accessibility and beyond. Nat. Immunol. 4: 624-630.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 624-630
-
-
Krangel, M.S.1
-
3
-
-
33747849302
-
Accessibility control of V(D)J recombination
-
Cobb, R. M., K. J. Oestreich, O. A. Osipovich, and E. M. Oltz. 2006. Accessibility control of V(D)J recombination. Adv. Immunol. 91: 45-109.
-
(2006)
Adv. Immunol.
, vol.91
, pp. 45-109
-
-
Cobb, R.M.1
Oestreich, K.J.2
Osipovich, O.A.3
Oltz, E.M.4
-
4
-
-
65249145203
-
Mechanics of T cell receptor gene rearrangement
-
Krangel, M. S. 2009. Mechanics of T cell receptor gene rearrangement. Curr. Opin. Immunol. 21: 133-139.
-
(2009)
Curr. Opin. Immunol.
, vol.21
, pp. 133-139
-
-
Krangel, M.S.1
-
5
-
-
0036489183
-
A change in the structure of Vbeta chromatin associated with TCR b allelic exclusion
-
Tripathi, R., A. Jackson, and M. S. Krangel. 2002. A change in the structure of Vbeta chromatin associated with TCR b allelic exclusion. J. Immunol. 168: 2316-2324.
-
(2002)
J. Immunol.
, vol.168
, pp. 2316-2324
-
-
Tripathi, R.1
Jackson, A.2
Krangel, M.S.3
-
6
-
-
0029819322
-
Gene-targeted deletion and replacement mutations of the T-cell receptor β-chain enhancer: The role of enhancer elements in controlling V(D)J recombination accessibility
-
Bories, J. C., J. Demengeot, L. Davidson, and F. W. Alt. 1996. Gene-targeted deletion and replacement mutations of the T-cell receptor β-chain enhancer: the role of enhancer elements in controlling V(D)J recombination accessibility. Proc. Natl. Acad. Sci. USA 93: 7871-7876.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7871-7876
-
-
Bories, J.C.1
Demengeot, J.2
Davidson, L.3
Alt, F.W.4
-
7
-
-
0029842562
-
Deletion of the mouse T-cell receptor β gene enhancer blocks alphabeta T-cell development
-
Bouvier, G., F. Watrin, M. Naspetti, C. Verthuy, P. Naquet, and P. Ferrier. 1996. Deletion of the mouse T-cell receptor β gene enhancer blocks alphabeta T-cell development. Proc. Natl. Acad. Sci. USA 93: 7877-7881.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7877-7881
-
-
Bouvier, G.1
Watrin, F.2
Naspetti, M.3
Verthuy, C.4
Naquet, P.5
Ferrier, P.6
-
8
-
-
0033103012
-
Control of V(D)J recombinational accessibility of the D β 1 gene segment at the TCR β locus by a germline promoter
-
Whitehurst, C. E., S. Chattopadhyay, and J. Chen. 1999. Control of V(D)J recombinational accessibility of the D β 1 gene segment at the TCR β locus by a germline promoter. Immunity 10: 313-322.
-
(1999)
Immunity
, vol.10
, pp. 313-322
-
-
Whitehurst, C.E.1
Chattopadhyay, S.2
Chen, J.3
-
9
-
-
33646007633
-
Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex
-
Oestreich, K. J., R. M. Cobb, S. Pierce, J. Chen, P. Ferrier, and E. M. Oltz. 2006. Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex. Immunity 24: 381-391.
-
(2006)
Immunity
, vol.24
, pp. 381-391
-
-
Oestreich, K.J.1
Cobb, R.M.2
Pierce, S.3
Chen, J.4
Ferrier, P.5
Oltz, E.M.6
-
10
-
-
0034605064
-
Chromatin remodeling by the T cell receptor (TCR)-β gene enhancer during early T cell development: Implications for the control of TCR-β locus recombination
-
Mathieu, N., W. M. Hempel, S. Spicuglia, C. Verthuy, and P. Ferrier. 2000. Chromatin remodeling by the T cell receptor (TCR)-β gene enhancer during early T cell development: implications for the control of TCR-β locus recombination. J. Exp. Med. 192: 625-636.
-
(2000)
J. Exp. Med.
, vol.192
, pp. 625-636
-
-
Mathieu, N.1
Hempel, W.M.2
Spicuglia, S.3
Verthuy, C.4
Ferrier, P.5
-
11
-
-
33747453473
-
Insulators: Exploiting transcriptional and epigenetic mechanisms
-
Gaszner, M., and G. Felsenfeld. 2006. Insulators: exploiting transcriptional and epigenetic mechanisms. Nat. Rev. Genet. 7: 703-713.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 703-713
-
-
Gaszner, M.1
Felsenfeld, G.2
-
13
-
-
0033529654
-
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
-
DOI 10.1016/S0092-8674(00)81967-4
-
Bell, A. C., A. G. West, and G. Felsenfeld. 1999. The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 98: 387-396. (Pubitemid 29380573)
-
(1999)
Cell
, vol.98
, Issue.3
, pp. 387-396
-
-
Bell, A.C.1
West, A.G.2
Felsenfeld, G.3
-
14
-
-
35548990188
-
We gather together: Insulators and genome organization
-
Wallace, J. A., and G. Felsenfeld. 2007. We gather together: insulators and genome organization. Curr. Opin. Genet. Dev. 17: 400-407.
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
15
-
-
35348924169
-
Genetics and epigenetics of the multifunctional protein CTCF
-
Filippova, G. N. 2008. Genetics and epigenetics of the multifunctional protein CTCF. Curr. Top. Dev. Biol. 80: 337-360.
-
(2008)
Curr. Top. Dev. Biol.
, vol.80
, pp. 337-360
-
-
Filippova, G.N.1
-
16
-
-
0035254535
-
RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae
-
Donze, D., and R. T. Kamakaka. 2001. RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae. EMBO J. 20: 520-531.
-
(2001)
EMBO J.
, vol.20
, pp. 520-531
-
-
Donze, D.1
Kamakaka, R.T.2
-
17
-
-
0035341465
-
Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci
-
DOI 10.1093/emboj/20.9.2224
-
Litt, M. D., M. Simpson, F. Recillas-Targa, M. N. Prioleau, and G. Felsenfeld. 2001. Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. EMBO J. 20: 2224-2235. (Pubitemid 32410592)
-
(2001)
EMBO Journal
, vol.20
, Issue.9
, pp. 2224-2235
-
-
Litt, M.D.1
Simpson, M.2
Recillas-Targa, F.3
Prioleau, M.-N.4
Felsenfeld, G.5
-
18
-
-
8644240108
-
Recruitment of histone modifications by USF proteins at a vertebrate barrier element
-
DOI 10.1016/j.molcel.2004.10.005, PII S1097276504006124
-
West, A. G., S. Huang, M. Gaszner, M. D. Litt, and G. Felsenfeld. 2004. Recruitment of histone modifications by USF proteins at a vertebrate barrier element. Mol. Cell 16: 453-463. (Pubitemid 39504798)
-
(2004)
Molecular Cell
, vol.16
, Issue.3
, pp. 453-463
-
-
West, A.G.1
Huang, S.2
Gaszner, M.3
Litt, M.D.4
Felsenfeld, G.5
-
19
-
-
66149152702
-
The impact of local genome sequence on defining heterochromatin domains
-
Wheeler, B. S., J. A. Blau, H. F. Willard, and K. C. Scott. 2009. The impact of local genome sequence on defining heterochromatin domains. PLoS Genet. 5: e1000453.
-
(2009)
PLoS Genet.
, vol.5
-
-
Wheeler, B.S.1
Blau, J.A.2
Willard, H.F.3
Scott, K.C.4
-
20
-
-
33646912186
-
A role for TFIIIC transcription factor complex in genome organization
-
Noma, K., H. P. Cam, R. J. Maraia, and S. I. Grewal. 2006. A role for TFIIIC transcription factor complex in genome organization. Cell 125: 859-872.
-
(2006)
Cell
, vol.125
, pp. 859-872
-
-
Noma, K.1
Cam, H.P.2
Maraia, R.J.3
Grewal, S.I.4
-
21
-
-
70350148258
-
Transcription independent insulation at TFIIIC-dependent insulators
-
Valenzuela, L., N. Dhillon, and R. T. Kamakaka. 2009. Transcription independent insulation at TFIIIC-dependent insulators. Genetics 183: 131-148.
-
(2009)
Genetics
, vol.183
, pp. 131-148
-
-
Valenzuela, L.1
Dhillon, N.2
Kamakaka, R.T.3
-
22
-
-
0026581936
-
RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement
-
Shinkai, Y., G. Rathbun, K. P. Lam, E. M. Oltz, V. Stewart, M. Mendelsohn, J. Charron, M. Datta, F. Young, A. M. Stall, et al. 1992. RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement. Cell 68: 855-867.
-
(1992)
Cell
, vol.68
, pp. 855-867
-
-
Shinkai, Y.1
Rathbun, G.2
Lam, K.P.3
Oltz, E.M.4
Stewart, V.5
Mendelsohn, M.6
Charron, J.7
Datta, M.8
Young, F.9
Stall, A.M.10
-
23
-
-
0027406812
-
Restoration of T cell development in RAG-2-deficient mice by functional TCR transgenes
-
Shinkai, Y., S. Koyasu, K. Nakayama, K. M. Murphy, D. Y. Loh, E. L. Reinherz, and F. W. Alt. 1993. Restoration of T cell development in RAG-2-deficient mice by functional TCR transgenes. Science 259: 822-825.
-
(1993)
Science
, vol.259
, pp. 822-825
-
-
Shinkai, Y.1
Koyasu, S.2
Nakayama, K.3
Murphy, K.M.4
Loh, D.Y.5
Reinherz, E.L.6
Alt, F.W.7
-
24
-
-
0034695501
-
A role for histone acetylation in the developmental regulation of VDJ recombination
-
McMurry, M. T., and M. S. Krangel. 2000. A role for histone acetylation in the developmental regulation of VDJ recombination. Science 287: 495-498.
-
(2000)
Science
, vol.287
, pp. 495-498
-
-
McMurry, M.T.1
Krangel, M.S.2
-
25
-
-
15444378125
-
Regulation of the murine Ddelta2 promoter by upstream stimulatory factor 1, Runx1, and c-Myb
-
Carabana, J., E. Ortigoza, and M. S. Krangel. 2005. Regulation of the murine Ddelta2 promoter by upstream stimulatory factor 1, Runx1, and c-Myb. J. Immunol. 174: 4144-4152. (Pubitemid 40395992)
-
(2005)
Journal of Immunology
, vol.174
, Issue.7
, pp. 4144-4152
-
-
Carabana, J.1
Ortigoza, E.2
Krangel, M.S.3
-
26
-
-
0344197733
-
The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain
-
Gombert, W. M., S. D. Farris, E. D. Rubio, K. M. Morey-Rosler, W. H. Schubach, and A. Krumm. 2003. The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain. Mol. Cell. Biol. 23: 9338-9348.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 9338-9348
-
-
Gombert, W.M.1
Farris, S.D.2
Rubio, E.D.3
Morey-Rosler, K.M.4
Schubach, W.H.5
Krumm, A.6
-
27
-
-
0030992767
-
An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus
-
Zhong, X. P., and M. S. Krangel. 1997. An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus. Proc. Natl. Acad. Sci. USA 94: 5219-5224.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5219-5224
-
-
Zhong, X.P.1
Krangel, M.S.2
-
28
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. D., and C. D. Allis. 2000. The language of covalent histone modifications. Nature 403: 41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
29
-
-
0035839136
-
Translating the histone code
-
Jenuwein, T., and C. D. Allis. 2001. Translating the histone code. Science 293: 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
30
-
-
0035839110
-
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
-
Noma K, C. D., Allis, and S. I. Grewal. 2001. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science 293: 1150-1155.
-
(2001)
Science
, vol.293
, pp. 1150-1155
-
-
Noma, K.1
Allis, C.D.2
Grewal, S.I.3
-
31
-
-
0036924095
-
Promoter activation by enhancer-dependent and -independent loading of activator and coactivator complexes
-
DOI 10.1016/S1097-2765(02)00791-8
-
Spicuglia, S., S. Kumar, J. H. Yeh, E. Vachez, L. Chasson, S. Gorbatch, J. Cautres, and P. Ferrier. 2002. Promoter activation by enhancer-dependent and -independent loading of activator and coactivator complexes. Mol. Cell 10: 1479-1487. (Pubitemid 36050887)
-
(2002)
Molecular Cell
, vol.10
, Issue.6
, pp. 1479-1487
-
-
Spicuglia, S.1
Kumar, S.2
Yeh, J.-H.3
Vachez, E.4
Chasson, L.5
Gorbatch, S.6
Cautres, J.7
Ferrier, P.8
-
32
-
-
0035282458
-
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
-
DOI 10.1038/35065138
-
Bannister, A. J., P. Zegerman, J. F. Partridge, E. A. Miska, J. O. Thomas, R. C. Allshire, and T. Kouzarides. 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410: 120-124. (Pubitemid 32225848)
-
(2001)
Nature
, vol.410
, Issue.6824
, pp. 120-124
-
-
Bannister, A.J.1
Zegerman, P.2
Partridge, J.F.3
Miska, E.A.4
Thomas, J.O.5
Allshire, R.C.6
Kouzarides, T.7
-
33
-
-
0035815360
-
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
-
Nakayama, J., J. C. Rice, B. D. Strahl, C. D. Allis, and S. I. Grewal. 2001. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292: 110-113.
-
(2001)
Science
, vol.292
, pp. 110-113
-
-
Nakayama, J.1
Rice, J.C.2
Strahl, B.D.3
Allis, C.D.4
Grewal, S.I.5
-
34
-
-
0033121285
-
UASrpg can function as a heterochromatin boundary element in yeast
-
Bi, X., and J. R. Broach. 1999. UASrpg can function as a heterochromatin boundary element in yeast. Genes Dev. 13: 1089-1101.
-
(1999)
Genes Dev.
, vol.13
, pp. 1089-1101
-
-
Bi, X.1
Broach, J.R.2
-
35
-
-
0037205232
-
Chromatin boundaries in budding yeast: The nuclear pore connection
-
Ishii, K., G. Arib, C. Lin, G. Van Houwe, and U. K. Laemmli. 2002. Chromatin boundaries in budding yeast: the nuclear pore connection. Cell 109: 551-562.
-
(2002)
Cell
, vol.109
, pp. 551-562
-
-
Ishii, K.1
Arib, G.2
Lin, C.3
Van Houwe, G.4
Laemmli, U.K.5
-
36
-
-
1342346506
-
Barrier proteins remodel and modify chromatin to restrict silenced domains
-
Oki, M., L. Valenzuela, T. Chiba, T. Ito, and R. T. Kamakaka. 2004. Barrier proteins remodel and modify chromatin to restrict silenced domains. Mol. Cell. Biol. 24: 1956-1967.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1956-1967
-
-
Oki, M.1
Valenzuela, L.2
Chiba, T.3
Ito, T.4
Kamakaka, R.T.5
-
37
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., M. Carey, and J. L. Workman. 2007. The role of chromatin during transcription. Cell 128: 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
38
-
-
0032530174
-
Loss of transcriptional activity of a transgene is accompanied by DNA methylation and histone deacetylation and is prevented by insulators
-
Pikaart, M. J., F. Recillas-Targa, and G. Felsenfeld. 1998. Loss of transcriptional activity of a transgene is accompanied by DNA methylation and histone deacetylation and is prevented by insulators. Genes Dev. 12: 2852-2862. (Pubitemid 28440144)
-
(1998)
Genes and Development
, vol.12
, Issue.18
, pp. 2852-2862
-
-
Pikaart, M.J.1
Recillas-Targa, F.2
Felsenfeld, G.3
-
39
-
-
0037076316
-
Position-effect protection and enhancer blocking by the chicken β-globin insulator are separable activities
-
Recillas-Targa, F., M. J. Pikaart, B. Burgess-Beusse, A. C. Bell, M. D. Litt, A. G. West, M. Gaszner, and G. Felsenfeld. 2002. Position-effect protection and enhancer blocking by the chicken β-globin insulator are separable activities. Proc. Natl. Acad. Sci. USA 99: 6883-6888.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6883-6888
-
-
Recillas-Targa, F.1
Pikaart, M.J.2
Burgess-Beusse, B.3
Bell, A.C.4
Litt, M.D.5
West, A.G.6
Gaszner, M.7
Felsenfeld, G.8
-
40
-
-
33750356627
-
At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription
-
DOI 10.1128/JVI.00871-06
-
Buzdin, A., E. Kovalskaya-Alexandrova, E. Gogvadze, and E. Sverdlov. 2006. At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription. J. Virol. 80: 10752-10762. (Pubitemid 44628921)
-
(2006)
Journal of Virology
, vol.80
, Issue.21
, pp. 10752-10762
-
-
Buzdin, A.1
Kovalskaya-Alexandrova, E.2
Gogvadze, E.3
Sverdlov, E.4
-
41
-
-
58149507192
-
Effects of retroviruses on host genome function
-
Jern, P., and J. M. Coffin. 2008. Effects of retroviruses on host genome function. Annu. Rev. Genet. 42: 709-732.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 709-732
-
-
Jern, P.1
Coffin, J.M.2
-
42
-
-
77955627648
-
Long-range function of an intergenic retrotransposon
-
Pi, W., X. Zhu, M. Wu, Y. Wang, S. Fulzele, A. Eroglu, J. Ling, and D. Tuan. 2010. Long-range function of an intergenic retrotransposon. Proc. Natl. Acad. Sci. USA 107: 12992-12997.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 12992-12997
-
-
Pi, W.1
Zhu, X.2
Wu, M.3
Wang, Y.4
Fulzele, S.5
Eroglu, A.6
Ling, J.7
Tuan, D.8
-
43
-
-
33947201809
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
-
Kim, T. H., Z. K. Abdullaev, A. D. Smith, K. A. Ching, D. I. Loukinov, R. D. Green, M. Q. Zhang, V. V. Lobanenkov, and B. Ren. 2007. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128: 1231-1245.
-
(2007)
Cell
, vol.128
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, R.D.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
44
-
-
52649132425
-
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
-
Jothi, R., S. Cuddapah, A. Barski, K. Cui, and K. Zhao. 2008. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res. 36: 5221-5231.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5221-5231
-
-
Jothi, R.1
Cuddapah, S.2
Barski, A.3
Cui, K.4
Zhao, K.5
-
46
-
-
77951215592
-
The mouse immunoglobulin heavy chain V-D intergenic sequence contains insulators that may regulate ordered V(D)J recombination
-
Featherstone, K., A. L. Wood, A. J. Bowen, and A. E. Corcoran. 2010. The mouse immunoglobulin heavy chain V-D intergenic sequence contains insulators that may regulate ordered V(D)J recombination. J. Biol. Chem. 285: 9327-9338.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 9327-9338
-
-
Featherstone, K.1
Wood, A.L.2
Bowen, A.J.3
Corcoran, A.E.4
-
47
-
-
0036796354
-
Mammalian retroelements
-
Deininger, P. L., and M. A. Batzer. 2002. Mammalian retroelements. Genome Res. 12: 1455-1465.
-
(2002)
Genome Res.
, vol.12
, pp. 1455-1465
-
-
Deininger, P.L.1
Batzer, M.A.2
-
48
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner, G. J., Y. Kimura, C. O. Daub, S. Wani, C. Plessy, K. M. Irvine, K. Schroder, N. Cloonan, A. L. Steptoe, T. Lassmann, et al. 2009. The regulated retrotransposon transcriptome of mammalian cells. Nat. Genet. 41: 563-571.
-
(2009)
Nat. Genet.
, vol.41
, pp. 563-571
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Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
Wani, S.4
Plessy, C.5
Irvine, K.M.6
Schroder, K.7
Cloonan, N.8
Steptoe, A.L.9
Lassmann, T.10
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