-
1
-
-
0030966099
-
-
M. Gellert, Adv. Immunol. 64, 39 (1997); D. G. Schatz, Sem. Immunol. 9, 149 (1997); U. Grawunder, R. B. West, M. R. Lieber, Curr. Opin. Immunol. 10, 172 (1998).
-
(1997)
Adv. Immunol.
, vol.64
, pp. 39
-
-
Gellert, M.1
-
2
-
-
0031171937
-
-
M. Gellert, Adv. Immunol. 64, 39 (1997); D. G. Schatz, Sem. Immunol. 9, 149 (1997); U. Grawunder, R. B. West, M. R. Lieber, Curr. Opin. Immunol. 10, 172 (1998).
-
(1997)
Sem. Immunol.
, vol.9
, pp. 149
-
-
Schatz, D.G.1
-
3
-
-
0031978710
-
-
M. Gellert, Adv. Immunol. 64, 39 (1997); D. G. Schatz, Sem. Immunol. 9, 149 (1997); U. Grawunder, R. B. West, M. R. Lieber, Curr. Opin. Immunol. 10, 172 (1998).
-
(1998)
Curr. Opin. Immunol.
, vol.10
, pp. 172
-
-
Grawunder, U.1
West, R.B.2
Lieber, M.R.3
-
4
-
-
0029894165
-
-
P. Stanhope-Baker, K. M. Hudson, A. L. Shaffer, A. Constantinescu, M. S. Schlissel, Cell 85, 887 (1996); J. Kwon, A. N. Imbalzano, A. Matthews, M. A. Oettinger, Mol. Cell 2, 829 (1998).
-
(1996)
Cell
, vol.85
, pp. 887
-
-
Stanhope-Baker, P.1
Hudson, K.M.2
Shaffer, A.L.3
Constantinescu, A.4
Schlissel, M.S.5
-
5
-
-
0032239155
-
-
P. Stanhope-Baker, K. M. Hudson, A. L. Shaffer, A. Constantinescu, M. S. Schlissel, Cell 85, 887 (1996); J. Kwon, A. N. Imbalzano, A. Matthews, M. A. Oettinger, Mol. Cell 2, 829 (1998).
-
(1998)
Mol. Cell
, vol.2
, pp. 829
-
-
Kwon, J.1
Imbalzano, A.N.2
Matthews, A.3
Oettinger, M.A.4
-
6
-
-
0033168204
-
-
A. Golding, S. Chandler, E. Ballestar, A. P. Wolffe, M. S. Schlissel, EMBO J. 18, 3712 (1999).
-
(1999)
EMBO J.
, vol.18
, pp. 3712
-
-
Golding, A.1
Chandler, S.2
Ballestar, E.3
Wolffe, A.P.4
Schlissel, M.S.5
-
7
-
-
0029983727
-
-
B. P. Sleckman, J. R. Gorman, F. W. Alt, Annu. Rev. Immunol. 14, 459 (1996); M. S. Schlissel and P. Stanhope-Baker, Sem. Immunol. 9, 161 (1997); W. M. Hempel, I. Leduc, N. Mathieu, R. K. Tripathi, P. Ferrier, Adv. Immunol. 69, 309 (1998).
-
(1996)
Annu. Rev. Immunol.
, vol.14
, pp. 459
-
-
Sleckman, B.P.1
Gorman, J.R.2
Alt, F.W.3
-
8
-
-
0031171282
-
-
B. P. Sleckman, J. R. Gorman, F. W. Alt, Annu. Rev. Immunol. 14, 459 (1996); M. S. Schlissel and P. Stanhope-Baker, Sem. Immunol. 9, 161 (1997); W. M. Hempel, I. Leduc, N. Mathieu, R. K. Tripathi, P. Ferrier, Adv. Immunol. 69, 309 (1998).
-
(1997)
Sem. Immunol.
, vol.9
, pp. 161
-
-
Schlissel, M.S.1
Stanhope-Baker, P.2
-
9
-
-
0031866349
-
-
B. P. Sleckman, J. R. Gorman, F. W. Alt, Annu. Rev. Immunol. 14, 459 (1996); M. S. Schlissel and P. Stanhope-Baker, Sem. Immunol. 9, 161 (1997); W. M. Hempel, I. Leduc, N. Mathieu, R. K. Tripathi, P. Ferrier, Adv. Immunol. 69, 309 (1998).
-
(1998)
Adv. Immunol.
, vol.69
, pp. 309
-
-
Hempel, W.M.1
Leduc, I.2
Mathieu, N.3
Tripathi, R.K.4
Ferrier, P.5
-
10
-
-
0031455415
-
-
P. L. Sheridan, T. P. Mayall, E. Verdin, K. A. Jones, Genes Dev. 11, 3327 (1998); L Madisen, A. Krumm, T. R. Hebbes, M. Groudine, Mol. Cell. Biol. 18, 6281 (1998); M.-H. Kuo, J. Zhou, P. Jambeck, M. E. A. Churchill, C. D. Allis, Genes Dev. 12, 627 (1998); B. S. Parekh and T. Maniatis, Mol. Cell 3, 125 (1999).
-
(1998)
Genes Dev.
, vol.11
, pp. 3327
-
-
Sheridan, P.L.1
Mayall, T.P.2
Verdin, E.3
Jones, K.A.4
-
11
-
-
0031792775
-
-
P. L. Sheridan, T. P. Mayall, E. Verdin, K. A. Jones, Genes Dev. 11, 3327 (1998); L Madisen, A. Krumm, T. R. Hebbes, M. Groudine, Mol. Cell. Biol. 18, 6281 (1998); M.-H. Kuo, J. Zhou, P. Jambeck, M. E. A. Churchill, C. D. Allis, Genes Dev. 12, 627 (1998); B. S. Parekh and T. Maniatis, Mol. Cell 3, 125 (1999).
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6281
-
-
Madisen, L.1
Krumm, A.2
Hebbes, T.R.3
Groudine, M.4
-
12
-
-
0032030906
-
-
P. L. Sheridan, T. P. Mayall, E. Verdin, K. A. Jones, Genes Dev. 11, 3327 (1998); L Madisen, A. Krumm, T. R. Hebbes, M. Groudine, Mol. Cell. Biol. 18, 6281 (1998); M.-H. Kuo, J. Zhou, P. Jambeck, M. E. A. Churchill, C. D. Allis, Genes Dev. 12, 627 (1998); B. S. Parekh and T. Maniatis, Mol. Cell 3, 125 (1999).
-
(1998)
Genes Dev.
, vol.12
, pp. 627
-
-
Kuo, M.-H.1
Zhou, J.2
Jambeck, P.3
Churchill, M.E.A.4
Allis, C.D.5
-
13
-
-
0032971444
-
-
P. L. Sheridan, T. P. Mayall, E. Verdin, K. A. Jones, Genes Dev. 11, 3327 (1998); L Madisen, A. Krumm, T. R. Hebbes, M. Groudine, Mol. Cell. Biol. 18, 6281 (1998); M.-H. Kuo, J. Zhou, P. Jambeck, M. E. A. Churchill, C. D. Allis, Genes Dev. 12, 627 (1998); B. S. Parekh and T. Maniatis, Mol. Cell 3, 125 (1999).
-
(1999)
Mol. Cell
, vol.3
, pp. 125
-
-
Parekh, B.S.1
Maniatis, T.2
-
14
-
-
0031132205
-
-
A. P. Wolffe, J. Wong, D. Pruss, Genes Cells 2, 291 (1997); K. Struhl, Genes Dev. 12, 599 (1998); J. L. Workman and R. E. Kingston, Annu. Rev. Biochem. 67, 545 (1998).
-
(1997)
Genes Cells
, vol.2
, pp. 291
-
-
Wolffe, A.P.1
Wong, J.2
Pruss, D.3
-
15
-
-
0032030770
-
-
A. P. Wolffe, J. Wong, D. Pruss, Genes Cells 2, 291 (1997); K. Struhl, Genes Dev. 12, 599 (1998); J. L. Workman and R. E. Kingston, Annu. Rev. Biochem. 67, 545 (1998).
-
(1998)
Genes Dev.
, vol.12
, pp. 599
-
-
Struhl, K.1
-
16
-
-
0031707751
-
-
A. P. Wolffe, J. Wong, D. Pruss, Genes Cells 2, 291 (1997); K. Struhl, Genes Dev. 12, 599 (1998); J. L. Workman and R. E. Kingston, Annu. Rev. Biochem. 67, 545 (1998).
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 545
-
-
Workman, J.L.1
Kingston, R.E.2
-
17
-
-
0028326787
-
-
T. R. Hebbes, A. L. Clayton, A. W. Thorne, C. Crane-Robinson, EMBO J. 13, 1823 (1994).
-
(1994)
EMBO J.
, vol.13
, pp. 1823
-
-
Hebbes, T.R.1
Clayton, A.L.2
Thorne, A.W.3
Crane-Robinson, C.4
-
18
-
-
0027465862
-
-
D. Lee, J. J. Hayes, D. Pruss, A. P. Wolffe, Cell 72, 73 (1993); M. Vettese-Dadey et al., EMBO J. 15, 2508 (1996).
-
(1993)
Cell
, vol.72
, pp. 73
-
-
Lee, D.1
Hayes, J.J.2
Pruss, D.3
Wolffe, A.P.4
-
19
-
-
0029985730
-
-
D. Lee, J. J. Hayes, D. Pruss, A. P. Wolffe, Cell 72, 73 (1993); M. Vettese-Dadey et al., EMBO J. 15, 2508 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 2508
-
-
Vettese-Dadey, M.1
-
21
-
-
0028276377
-
-
_, J. Exp. Med. 179, 1913 (1994).
-
(1994)
J. Exp. Med.
, vol.179
, pp. 1913
-
-
-
23
-
-
0030984563
-
-
P. Lauzurica, X.-P. Zhong, M. S. Krangel, J. L. Roberts, J. Exp. Med. 185, 1193 (1997).
-
(1997)
J. Exp. Med.
, vol.185
, pp. 1193
-
-
Lauzurica, P.1
Zhong, X.-P.2
Krangel, M.S.3
Roberts, J.L.4
-
24
-
-
0030853938
-
-
M. T. McMurry, C. Hernandez-Munain, P. Lauzurica, M. S. Krangel, Mol. Cell. Biol. 17, 4553 (1997).
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4553
-
-
McMurry, M.T.1
Hernandez-Munain, C.2
Lauzurica, P.3
Krangel, M.S.4
-
25
-
-
0343747984
-
-
note
-
3EDTA (pH7.0), 10 mM sodium butyrate, 100 mM NaCl, 0.1 mM PMSF, and 0.1 mM benzamidine, and 2 to 3 mg of Hi-depleted, digested chromatin was loaded onto each gradient and centrifuged for 18 hours at 40,000 rpm in an SW-40 rotor (Beckman Instruments, Fullerton, CA) at 4°C Mononucleosome-containing fractions were identified as described (26). Immunoprecipitation of freshly prepared mononucieosomes (25 to 40 μg) was performed as described (7), with modifications. Pooled gradient fractions were first treated with 0.6 μl of 50% salmon sperm DNA-protein A-Sepharose slurry per μg of mononucleosomes for 30 min at 4°C, followed by centrifugation for 5 min at 13,000g. The supernatant was incubated with antibody to diacetylated histone H3-purified rabbit immunoglobulin C (IgG) (Upstate Biotechnology, Lake Placid NY) or control rabbit IgG (Sigma) (0.25 μg/μg of DNA) for 16 hours, followed by addition of salmon sperm DNA-protein A-Sepharose (12 μl/μg of antibody) for 1 hour. After centrifugation, the supernatant was retained, the IP washed, and DNA purified from these and input fractions (7).
-
-
-
-
26
-
-
0342442706
-
-
note
-
32P-labeled by random priming.
-
-
-
-
28
-
-
0026581936
-
-
Y. Shinkai et al., Cell 68, 855 (1992).
-
(1992)
Cell
, vol.68
, pp. 855
-
-
Shinkai, Y.1
-
29
-
-
0343747980
-
-
note
-
Acetylation was quantified by Phophorlmager (Molecular Dynamics) analysis of Southern blots. Values of B/U are reported, where B is the bound fraction of the αAcH3 IP and U is the unbound fraction of the control IP. The latter was used instead of the unbound fraction of the αAcH3 IP to prevent the ratios from being artificially inflated by depletion of the unbound fraction in instances of heavy acetylation. B/U ratios were calculated by determining the displacement between the B and U titration curves.
-
-
-
-
30
-
-
0027406812
-
-
Y. Shinkai et al., Science 259, 822 (1993).
-
(1993)
Science
, vol.259
, pp. 822
-
-
Shinkai, Y.1
-
32
-
-
0033136297
-
-
R. J. Monroe et al., Immunity 10, 503 (1999).
-
(1999)
Immunity
, vol.10
, pp. 503
-
-
Monroe, R.J.1
-
33
-
-
0030663194
-
-
B. P. Sleckman, C. G. Bardon, R. Ferrini, L. Davidson, F. W. Alt, Immunity 7, 505 (1997).
-
(1997)
Immunity
, vol.7
, pp. 505
-
-
Sleckman, B.P.1
Bardon, C.G.2
Ferrini, R.3
Davidson, L.4
Alt, F.W.5
-
36
-
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0342876783
-
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note
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Southern blot analysis of titrated nuclease digests indicated that the sensitivity to nuclease digestion of analyzed sequences was similar to that of bulk DNA.
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0343311852
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note
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-/- for clarity because the endogenous locus rather than the transgene is analyzed. The Oct-2 panel for this sample is identical to that for R×A in Fig. 2B.
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note
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We thank B. Sleckman, Y. Zhuang, and C. Doyle for comments on the manuscript and encouragement, and C. Hernandez-Munain for advice. Supported by NIH grant GM 41052. M.T.M. was supported in part by an NIH Medical Scientist Training Grant and a United Negro College Fund-Merck Graduate Science Research Dissertation Fellowship.
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