-
1
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jensen, R. A. (1974) Enzyme recruitment in evolution of new function Annu. Rev. Microbiol. 30, 409-425
-
(1974)
Annu. Rev. Microbiol.
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
2
-
-
0033117461
-
Catalytic promiscuity and the evolution of new enzymatic activities
-
O'Brien, P. J. and Herschlag, D. (1999) Catalytic promiscuity and the evolution of new enzymatic activities Chem. Biol. 6, R91-R105
-
(1999)
Chem. Biol.
, vol.6
-
-
O'Brien, P.J.1
Herschlag, D.2
-
3
-
-
33748525221
-
Evolution of enzyme superfamilies
-
DOI 10.1016/j.cbpa.2006.08.012, PII S1367593106001177, Analytical Techniques/Mechanisms
-
Glasner, M. E., Gerlt, J. A., and Babbitt, P. C. (2006) Evolution of enzyme superfamilies Curr. Opin. Chem. Biol. 10, 492-497 (Pubitemid 44375064)
-
(2006)
Current Opinion in Chemical Biology
, vol.10
, Issue.5
, pp. 492-497
-
-
Glasner, M.E.1
Gerlt, J.A.2
Babbitt, P.C.3
-
4
-
-
77953623874
-
Enzyme promiscuity: A mechanistic and evolutionary perspective
-
Khersonsky, O. and Tawfik, D. S. (2010) Enzyme promiscuity: A mechanistic and evolutionary perspective Annu. Rev. Biochem. 79, 471-505
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 471-505
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
5
-
-
0003787433
-
-
in (, Eds.) Elsevier, Oxford, U.K.
-
Copley, S. D. (2010) in Comprehensive Natural Products Chemistry (Barton, D. and Meth-Cohn, O., Eds.) Elsevier, Oxford, U.K.
-
(2010)
Comprehensive Natural Products Chemistry
-
-
Copley, S.D.1
Barton, D.2
Meth-Cohn, O.3
-
6
-
-
0032176603
-
Mechanistically diverse enzyme superfamilies: The importance of chemistry in the evolution of catalysis
-
Gerlt, J. A. and Babbitt, P. C. (1998) Mechanistically diverse enzyme superfamilies: The importance of chemistry in the evolution of catalysis Curr. Opin. Chem. Biol. 2, 607-612 (Pubitemid 128645717)
-
(1998)
Current Opinion in Chemical Biology
, vol.2
, Issue.5
, pp. 607-612
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
7
-
-
0035943351
-
The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli
-
DOI 10.1006/jmbi.2001.4912
-
Teichmann, S. A., Rison, S. C., Thornton, J. M., Riley, M., Gough, J., and Chothia, C. (2001) The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli J. Mol. Biol. 311, 693-708 (Pubitemid 32803729)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.4
, pp. 693-708
-
-
Teichmann, S.A.1
Rison, S.C.G.2
Thornton, J.M.3
Riley, M.4
Gough, J.5
Chothia, C.6
-
8
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
Nobeli, I., Favia, A. D., and Thornton, J. M. (2009) Protein promiscuity and its implications for biotechnology Nat. Biotechnol. 27, 157-167
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
9
-
-
14644429634
-
A ligand-centric analysis of the diversity and evolution of protein-ligand relationships in E. coli
-
DOI 10.1016/j.jmb.2005.01.061
-
Nobeli, I., Spriggs, R. V., George, R. A., and Thornton, J. M. (2005) A ligand-centric analysis of the diversity and evolution of protein-ligand relationships in E. coli J. Mol. Biol. 347, 415-436 (Pubitemid 40312468)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.2
, pp. 415-436
-
-
Nobeli, I.1
Spriggs, R.V.2
George, R.A.3
Thornton, J.M.4
-
10
-
-
50949084090
-
Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies
-
Chiang, R. A., Sali, A., and Babbitt, P. C. (2008) Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies PLoS Comput. Biol. 4, e1000142
-
(2008)
PLoS Comput. Biol.
, vol.4
, pp. 1000142
-
-
Chiang, R.A.1
Sali, A.2
Babbitt, P.C.3
-
11
-
-
35148837586
-
Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery
-
Ji, H. F., Kong, D. X., Shen, L., Chen, L. L., Ma, B. G., and Zhang, H. Y. (2007) Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery Genome Biol. 8, R176.1-R176.13
-
(2007)
Genome Biol.
, vol.8
-
-
Ji, H.F.1
Kong, D.X.2
Shen, L.3
Chen, L.L.4
Ma, B.G.5
Zhang, H.Y.6
-
12
-
-
10044248344
-
Catalytic promiscuity in biocatalysis: Using old enzymes to form new bonds and follow new pathways
-
DOI 10.1002/anie.200460416
-
Bornscheuer, U. T. and Kazlauskas, R. J. (2004) Catalytic promiscuity in biocatalysis: Using old enzymes to form new bonds and follow new pathways Angew. Chem., Int. Ed. 43, 6032-6040 (Pubitemid 39611872)
-
(2004)
Angewandte Chemie - International Edition
, vol.43
, Issue.45
, pp. 6032-6040
-
-
Bornscheuer, U.T.1
Kazlauskas, R.J.2
-
13
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
-
Kitagawa, M., Ara, T., Arifuzzaman, M., Ioka-Nakamichi, T., Inamoto, E., Toyonaga, H., and Mori, H. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research DNA Res. 12, 291-299
-
(2005)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
14
-
-
79952166228
-
Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli.
-
Soo, V. W., Hanson-Manful, P., and Patrick, W. M. (2011) Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 108, 1199-1200
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 1199-1200
-
-
Soo, V.W.1
Hanson-Manful, P.2
Patrick, W.M.3
-
15
-
-
78149274796
-
Recruitment of genes and enzymes conferring resistance to the nonnatural toxin bromoacetate
-
Desai, K. K. and Miller, B. G. (2010) Recruitment of genes and enzymes conferring resistance to the nonnatural toxin bromoacetate Proc. Natl. Acad. Sci. U.S.A. 107, 17968-17973
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 17968-17973
-
-
Desai, K.K.1
Miller, B.G.2
-
16
-
-
0842270116
-
Enzyme-like proteins from an unselected library of designed amino acid sequences
-
DOI 10.1093/protein/gzh007
-
Wei, Y. and Hecht, M. H. (2004) Enzyme-like proteins from an unselected library of designed amino acid sequences Protein Eng., Des. Sel. 17, 67-75 (Pubitemid 38173170)
-
(2004)
Protein Engineering, Design and Selection
, vol.17
, Issue.1
, pp. 67-75
-
-
Wei, Y.1
Hecht, M.H.2
-
17
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger, D., Khersonsky, O., Wollacott, A. M., Jiang, L., DeChancie, J., Betker, J., Gallaher, J. L., Althoff, E. A., Zanghellini, A., Dym, O., Albeck, S., Houk, K. N., Tawfik, D. S., and Baker, D. (2008) Kemp elimination catalysts by computational enzyme design Nature 453, 190-194
-
(2008)
Nature
, vol.453
, pp. 190-194
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
Dechancie, J.5
Betker, J.6
Gallaher, J.L.7
Althoff, E.A.8
Zanghellini, A.9
Dym, O.10
Albeck, S.11
Houk, K.N.12
Tawfik, D.S.13
Baker, D.14
-
18
-
-
0001348193
-
The physical organic chemistry of benzisoxazoles. I. The mechanism of the base-catalyzed decomposition of benzisoxazoles
-
Casey, M. L., Kemp, D. S., Paul, K. C., and Cox, D. D. (1973) The physical organic chemistry of benzisoxazoles. I. The mechanism of the base-catalyzed decomposition of benzisoxazoles J. Org. Chem. 38, 2294-2301
-
(1973)
J. Org. Chem.
, vol.38
, pp. 2294-2301
-
-
Casey, M.L.1
Kemp, D.S.2
Paul, K.C.3
Cox, D.D.4
-
19
-
-
75849140293
-
New insights into bacterial acquisition of phosphorus in the surface ocean
-
White, A. E. (2009) New insights into bacterial acquisition of phosphorus in the surface ocean Proc. Natl. Acad. Sci. U.S.A. 106, 21013-21014
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 21013-21014
-
-
White, A.E.1
-
20
-
-
77649239492
-
An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily
-
van Loo, B., Jonas, S., Babtie, A. C., Benjdia, A., Berteau, O., Hyvonen, M., and Hollfelder, F. (2010) An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily Proc. Natl. Acad. Sci. U.S.A. 107, 2740-2745
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 2740-2745
-
-
Van Loo, B.1
Jonas, S.2
Babtie, A.C.3
Benjdia, A.4
Berteau, O.5
Hyvonen, M.6
Hollfelder, F.7
-
21
-
-
74349100743
-
Analysis of the intermediary metabolism of a reductive chemoautotroph
-
Srinivasan, V. and Morowitz, H. J. (2009) Analysis of the intermediary metabolism of a reductive chemoautotroph Biol. Bull. 217, 222-232
-
(2009)
Biol. Bull.
, vol.217
, pp. 222-232
-
-
Srinivasan, V.1
Morowitz, H.J.2
-
22
-
-
0033607453
-
Total Synthesis of (±)-Epibatidine Using a Biocatalytic Approach
-
Olivo, H. F. and Hemenway, M. S. (1999) Total Synthesis of (±)-Epibatidine Using a Biocatalytic Approach J. Org. Chem. 64, 8968-8969 (Pubitemid 129599417)
-
(1999)
Journal of Organic Chemistry
, vol.64
, Issue.24
, pp. 8968-8969
-
-
Olivo, H.F.1
Hemenway, M.S.2
-
23
-
-
0035808421
-
The concept of docking and protecting groups in biohydroxylation
-
de Raadt, A., Griengl, H., and Weber, H. (2001) The concept of docking and protecting groups in biohydroxylation Chem.-Eur. J. 7, 27-31
-
(2001)
Chem.-Eur. J.
, vol.7
, pp. 27-31
-
-
De Raadt, A.1
Griengl, H.2
Weber, H.3
-
24
-
-
33746685089
-
The 3-(3-pyridine)propionyl anchor group for protease-catalyzed resolutions: p-toluenesulfinamide and sterically hindered secondary alcohols
-
DOI 10.1002/adsc.200606040
-
Savile, C. K. and Kazlauskas, R. J. (2006) The 3-(3-pyridine)propionyl anchor group for protease-catalyzed resolutions: p-Toluenesulfinamide and sterically hindered secondary alcohols Adv. Synth. Catal. 348, 1183-1192 (Pubitemid 44166102)
-
(2006)
Advanced Synthesis and Catalysis
, vol.348
, Issue.10-11
, pp. 1183-1192
-
-
Savile, C.K.1
Kazlauskas, R.J.2
-
25
-
-
0032524205
-
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase
-
Kanaya, S., Koyanagi, T., and Kanaya, E. (1998) An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase Biochem. J. 332 (Pt 1) 75-80 (Pubitemid 28239320)
-
(1998)
Biochemical Journal
, vol.332
, Issue.1
, pp. 75-80
-
-
Kanaya, S.1
Koyanagi, T.2
Kanaya, E.3
-
26
-
-
0017125338
-
Protease i from Eschrechia coli
-
Pacaud, M., Sibilli, L., and Le Bras, G. (1976) Protease I from Eschrechia coli Eur. J. Biochem. 69, 141-151
-
(1976)
Eur. J. Biochem.
, vol.69
, pp. 141-151
-
-
Pacaud, M.1
Sibilli, L.2
Le Bras, G.3
-
27
-
-
15944426144
-
Enzyme genomics: Application of general enzymatic screens to discover new enzymes
-
DOI 10.1016/j.femsre.2004.12.006, Bacterial Genomics
-
Kuznetsova, E., Proudfoot, M., Sanders, S. A., Reinking, J., Savchenko, A., Arrowsmith, C. H., Edwards, A. M., and Yakunin, A. F. (2005) Enzyme genomics: Application of general enzymatic screens to discover new enzymes FEMS Microbiol. Rev. 29, 263-279 (Pubitemid 40432469)
-
(2005)
FEMS Microbiology Reviews
, vol.29
, Issue.2
, pp. 263-279
-
-
Kuznetsova, E.1
Proudfoot, M.2
Sanders, S.A.3
Reinking, J.4
Savchenko, A.5
Arrowsmith, C.H.6
Edwards, A.M.7
Yakunin, A.F.8
-
28
-
-
39749119783
-
Rapid functional identification of putative genes based on the combined in vitro protein synthesis with mass spectrometry: A tool for functional genomics
-
Kim, J. H., Jang, K. S., Yang, Y. H., Kim, Y. G., Lee, J. H., Oh, M. K., Kim, B. G., and Lee, C. S. (2008) Rapid functional identification of putative genes based on the combined in vitro protein synthesis with mass spectrometry: A tool for functional genomics Anal. Biochem. 375, 11-17
-
(2008)
Anal. Biochem.
, vol.375
, pp. 11-17
-
-
Kim, J.H.1
Jang, K.S.2
Yang, Y.H.3
Kim, Y.G.4
Lee, J.H.5
Oh, M.K.6
Kim, B.G.7
Lee, C.S.8
-
29
-
-
0038168191
-
Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli
-
DOI 10.1074/jbc.M303867200
-
Sanishvili, R., Yakunin, A. F., Laskowski, R. A., Skarina, T., Evdokimova, E., Doherty-Kirby, A., Lajoie, G. A., Thornton, J. M., Arrowsmith, C. H., Savchenko, A., Joachimiak, A., and Edwards, A. M. (2003) Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli J. Biol. Chem. 278, 26039-26045 (Pubitemid 36835371)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.28
, pp. 26039-26045
-
-
Sanishvili, R.1
Yakunin, A.F.2
Laskowski, R.A.3
Skarina, T.4
Evdokimova, E.5
Doherty-Kirby, A.6
Lajoie, G.A.7
Thornton, J.M.8
Arrowsmith, C.H.9
Savchenko, A.10
Joachimiak, A.11
Edwards, A.M.12
-
30
-
-
0039224934
-
Molecular characterization of PadA, a phenylacetaldehyde dehydrogenase from Escherichia coli
-
DOI 10.1016/S0014-5793(97)00228-7, PII S0014579397002287
-
Ferrandez, A., Prieto, M. A., Garcia, J. L., and Diaz, E. (1997) Molecular characterization of PadA, a phenylacetaldehyde dehydrogenase from Escherichia coli FEBS Lett. 406, 23-27 (Pubitemid 27156950)
-
(1997)
FEBS Letters
, vol.406
, Issue.1-2
, pp. 23-27
-
-
Ferrandez, A.1
Prieto, M.A.2
Garcia, J.L.3
Diaz, E.4
|