Shift from farm to dairy tank milk microbiota revealed by a polyphasic approach is independent from geographical origin

International Journal of Food Microbiology

Volumn 145, Issue SUPPL. 1, 2011, Pages

  Fricker, Martina ^a   Skånseng, Beate ^b   Rudi, Knut ^b,c   Stessl, Beatrix ^a   Ehling Schulz, Monika ^a  

^a UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^b NOFIMA   (Norway)

^c INLAND NORWAY UNIVERSITY OF APPLIED SCIENCES   (Norway)

Author keywords

Direct sequencing; FTIR; Microbiota; Raw milk

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL FLORA; BACTERIUM CONTAMINATION; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DAIRY INDUSTRY; DNA SEQUENCE; FOOD CONTAMINATION; GEOGRAPHIC ORIGIN; INFRARED SPECTROSCOPY; MILK; NONHUMAN; SEQUENCE ANALYSIS; TANK;

ANIMALS; BACTERIA; DAIRYING; EUROPE; FOOD MICROBIOLOGY; MILK;

BACTERIA (MICROORGANISMS);

EID: 79953047287     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2010.08.025     Document Type: Article

References (32)

1. Arakawa K., Kawai Y., Iioka H., Tanioka M., Nishimura J., Kitazawa H., Tsurumi K., Saito T. Microbial community analysis of food-spoilage bacteria in commercial custard creams using culture-dependent and independent methods. Journal of Dairy Science 2008, 91:2938-2946.
2. Baker G.C., Smith J.J., Cowan D.A. Review and re-analysis of domain-specific 16S-primers. Journal of Microbiological Methods 2003, 55:541-555.
3. Callon C., Duthoit F., Delbès C., Ferrand M., Le Frileux Y., De Crémoux R., Montel M.-C. Stability of microbial communities in goat milk during a lactation year: molecular approaches. Systematic and Applied Microbiology 2007, 30:547-560.
4. Coenye T., Vandamme P. Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes. FEMS Microbiology Letters 2003, 228:45-49.
5. Coorevits A., De Jonghe V., Vandroemme J., Reekmans R., Heyrman J., Messens W., De Vos P., Heyndrickx M. Comparative analysis of the diversity of aerobic spore-forming bacteria in raw milk from organic and conventional dairy farms. Systematic and Applied Microbiology 2008, 31:126-140.
6. Delbès C., Ali-Mandjee L., Montel M.-C. Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses. Applied and Environmental Microbiology 2007, 73:1882-1891.
7. Ehling-Schulz M., Svensson B., Guinebretiere M.-H., Lindbäck T., Andersson M., Schulz A., Fricker M., Christiansson A., Granum P.E., Märtlbauer E., Nguyen-The C., Salkinoja-Salonen M., Scherer S. Emetic toxin formation of Bacillus cereus is restricted to a single evolutionary lineage of closely related strains. Microbiology 2005, 151:183-197.
8. Ercolini D., Russo F., Ferrocino I., Villani F. Molecular identification of mesophilic and psychrotrophic bacteria from raw cow's milk. Food Microbiology 2009, 26:228-231.
9. Giannino M.L., Aliprandi M., Feligini M., Vanoni L., Brasca M., Fracchetti F. A DNA array based assay for the characterization of microbial community in raw milk. Journal of Microbiological Methods 2009, 78:181-188.
10. Giannino M.L., Marzotto M., Dellaglio F., Feligini M. Study of microbial diversity in raw milk and fresh curd used for Fontina cheese production by culture-independent methods. International Journal of Food Microbiology 2009, 130:188-195.
11. Hantsis-Zacharov E., Halpern M. Culturable psychrotrophic bacterial communities in raw milk and their proteolytic and lipolytic traits. Applied and Environmental Microbiology 2007, 73:7162-7168.
12. Huck J.R., Sonnen M., Boor K.J. Tracking heat-resistant, cold-thriving fluid milk spoilage bacteria from farm to packaged product. Journal of Dairy Science 2008, 91:1218-1228.
13. Jolliffe, 1986. Principal components used with other multivariante techniques. In.
14. Kümmerle M., Scherer S., Seiler H. Rapid and reliable identification of food-borne yeasts by Fourier-Transform Infrared Spectroscopy. Applied and Environmental Microbiology 1998, 64:2207-2214.
15. Lafarge V., Ogier J.-C., Girard V., Maladen V., Leveau J.-Y., Gruss A., Delacroix-Buchet A. Raw cow milk bacterial population shifts attributable to refrigeration. Applied and Environmental Microbiology 2004, 70:5644-5650.
16. LeJeune J.T., Rajala-Schultz P.J. Food safety: unpasteurized milk: a continued public health threat. Clinical Infectious Diseases 2009, 48:93-100.
17. Mayr R., Fricker M., Maoz A., Scherer S. Anti-listerial activity and biodiversity of cheese surface cultures: influence of the ripening temperature regime. European Food Research and Technology 2004, 218:242-247.
18. Mellmann A., Becker K., von Eiff C., Keckevoet U., Schumann P., Harmsen D. Sequencing and staphylococci identification. Emerging Infectious Diseases 2006, 12:333-336.
19. Nadkarni M.A., Martin E., Jacques N.A., Hunter N. Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 2002, 148:257-266.
20. Naumann D., Helm D., Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature 1991, 351:81-82.
21. Oberreuter H., Seiler H., Scherer S. Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy. International Journal of Systematic and Evolutionary Microbiology 2002, 52:91-100.
22. Oberreuter H., Brodbeck A., von Stetten S., Goerges S., Scherer S. Fourier-transform infrared (FT-IR) spectroscopy is a promising tool for monitoring the population dynamics of microorganisms in food stuff. European Journal of Food Research and Technology 2003, 216:434-439.
23. O'Connor R.E., Ewings K.N., Hayward A.C., O'Rourke P.K. Numerical taxonomy of proteolytic psychrotrophs from Queensland raw milks. The Journal of Applied Bacteriology 1986, 61:25-38.
24. Ogier J.-C., Lafarge V., Girard V., Rault A., Maladen V., Gruss A., Leveau J.-Y., Delacroix-Buchet A. Molecular fingerprinting of dairy microbial ecosystems by use of temporal temperature and denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 2004, 70:5628-5643.
25. Rudi K., Maugesten T., Hannevik S.E., Nissen H. Explorative multivariate analysis of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish. Applied and Environmental Microbiology 2004, 70:5010-5018.
26. Scheldeman P., Pil A., Herman L., De Vos P., Heyndrickx M. Incidence and diversity of potentially highly heat-resistant spores isolated at dairy farms. Applied and Environmental Microbiology 2005, 71:1480-1494.
27. Skånseng B., Kaldhusdal M., Rudi K. Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR. Molecular and Cellular Probes 2006, 20:269-279.
28. Skånseng B., Trosvik P., Zimonja M., Johnsen G., Bjerrum L., Pedersen K., Wallin N., Rudi K. Co-infection dynamic of a major food-borne zoonotic pathogen in chicken. PLoS Pathogens 2007, 3:e175. 10.1371/journal.ppat.0030175.
29. Stackebrandt E., Liesack W. The potential of rDNA in identification and diagnostics. Nonradioactive Labeling and Detection of Biomolecules 1992, 232-239. Springer. C. Kesser (Ed.).
30. Ternström A., Lindberg A.M., Molin G. Classification of the spoilage flora of raw and pasteurized bovine milk, with special reference to Pseudomonas and Bacillus. The Journal of Applied Bacteriology 1993, 75:25-34.
31. Wenning M., Scherer S., Naumann D. Infrared spectroscopy in the identification of microorganisms. Vibrational Spectroscopy for Medical Diagnosis 2008, 71-96. John Wiley & Son Ltd, Chichester, England. M. Diem, P.R. Griffiths, J.M. Chalmers (Eds.).
32. Zimonja M., Rudi K., Trosvik P., Naes T. Multivariate curve resolution of mixed bacterial DNA sequence spectra: identification and quantification of bacteria in undefined mixture samples. Journal of Chemometrics 2008, 22:309-322.