메뉴 건너뛰기




Volumn 78, Issue 2, 2009, Pages 181-188

A DNA array based assay for the characterization of microbial community in raw milk

Author keywords

Bacteria; Multiplex PCR; Oligonucleotide microarray; Raw milk

Indexed keywords

BACTERIAL DNA; DEOXYURIDINE TRIPHOSPHATE PYROPHOSPHATASE; GENOMIC DNA; RNA 23S; VIRULENCE FACTOR;

EID: 67650351499     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2009.05.015     Document Type: Article
Times cited : (33)

References (36)
  • 1
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain specific 16S primers
    • Baker G.C., Smith J.J., and Cowan D.A. Review and re-analysis of domain specific 16S primers. J. Microbiol. Methods 55 (2003) 541-555
    • (2003) J. Microbiol. Methods , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 2
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call D.R., Borucki M.K., and Loge F.J. Detection of bacterial pathogens in environmental samples using DNA microarrays. J. Microbiol. Methods 53 (2003) 235-243
    • (2003) J. Microbiol. Methods , vol.53 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 3
    • 34147182303 scopus 로고    scopus 로고
    • Detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
    • Chakravorty S., Helb D., Burday M., Connell N., and Alland D.A. Detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J. Microbiol. Methods 69 (2007) 330-339
    • (2007) J. Microbiol. Methods , vol.69 , pp. 330-339
    • Chakravorty, S.1    Helb, D.2    Burday, M.3    Connell, N.4    Alland, D.A.5
  • 5
    • 43049140781 scopus 로고    scopus 로고
    • Taxonomic and strain-specific identification of the probiotic strain Lactobacillus rhamnosus 35 within the Lactobacillus casei group
    • Coudeyras S., Marchandin H., Fajon C., and Forestier C. Taxonomic and strain-specific identification of the probiotic strain Lactobacillus rhamnosus 35 within the Lactobacillus casei group. Appl. Environ. Microbiol. 74 (2008) 2679-2689
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2679-2689
    • Coudeyras, S.1    Marchandin, H.2    Fajon, C.3    Forestier, C.4
  • 7
    • 33947355835 scopus 로고    scopus 로고
    • Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses
    • Delbès C., Ali-Mandjee L., and Monte M.C. Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses. Appl. Environ. Microbiol. 73 (2007) 1882-1891
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1882-1891
    • Delbès, C.1    Ali-Mandjee, L.2    Monte, M.C.3
  • 8
    • 3242685365 scopus 로고    scopus 로고
    • The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products
    • Dubois J.W., Hill S., England L.S., Edge T., Masson L., Trevors J.T., and Brousseau R. The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products. J. Microbiol. Methods 58 (2004) 251-262
    • (2004) J. Microbiol. Methods , vol.58 , pp. 251-262
    • Dubois, J.W.1    Hill, S.2    England, L.S.3    Edge, T.4    Masson, L.5    Trevors, J.T.6    Brousseau, R.7
  • 11
    • 62249209472 scopus 로고    scopus 로고
    • Study of microbial diversity in raw milk and fresh curd used for Fontina cheese production by culture-independent methods
    • 10.1016/j.ijfoodmicro.2009.01.022
    • Giannino M.L., Marzotto M., Dellaglio F., and Feligini M. Study of microbial diversity in raw milk and fresh curd used for Fontina cheese production by culture-independent methods. Int. J. Food Microbiol. (2008) 10.1016/j.ijfoodmicro.2009.01.022
    • (2008) Int. J. Food Microbiol.
    • Giannino, M.L.1    Marzotto, M.2    Dellaglio, F.3    Feligini, M.4
  • 12
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 33745936538 scopus 로고    scopus 로고
    • Real-time PCR for the detection of Salmonella spp. in food: an alternative approach to a conventional PCR system suggested by the FOOD-PCR project
    • Hein I., Flekna G., Krassnig M., and Wagner M. Real-time PCR for the detection of Salmonella spp. in food: an alternative approach to a conventional PCR system suggested by the FOOD-PCR project. J. Microbiol. Methods 66 (2006) 538-547
    • (2006) J. Microbiol. Methods , vol.66 , pp. 538-547
    • Hein, I.1    Flekna, G.2    Krassnig, M.3    Wagner, M.4
  • 15
    • 3242794169 scopus 로고    scopus 로고
    • Application of oligonucleotide array technology for the rapid detection of pathogenic bacteria of foodborne infections
    • Hong B.X., Jang L.F., Hu Y.S., Fang D.Y., and Guo H.Y. Application of oligonucleotide array technology for the rapid detection of pathogenic bacteria of foodborne infections. J. Microbiol. Methods 58 (2004) 403-411
    • (2004) J. Microbiol. Methods , vol.58 , pp. 403-411
    • Hong, B.X.1    Jang, L.F.2    Hu, Y.S.3    Fang, D.Y.4    Guo, H.Y.5
  • 16
    • 34548171229 scopus 로고    scopus 로고
    • Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems
    • Huws S.A., Edwards J.E., Kim E.J., and Scollan N.D. Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems. J. Microbiol. Methods 70 (2007) 565-569
    • (2007) J. Microbiol. Methods , vol.70 , pp. 565-569
    • Huws, S.A.1    Edwards, J.E.2    Kim, E.J.3    Scollan, N.D.4
  • 18
    • 3242881429 scopus 로고    scopus 로고
    • Direct quantification of Campylobacter jejuni and Campylobacter lanienae in feces of cattle by real-time quantitative PCR
    • Inglis G.D., and Kalischuk L.D. Direct quantification of Campylobacter jejuni and Campylobacter lanienae in feces of cattle by real-time quantitative PCR. Appl. Environ. Microbiol. 70 (2004) 2296-2306
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2296-2306
    • Inglis, G.D.1    Kalischuk, L.D.2
  • 19
    • 49449084992 scopus 로고    scopus 로고
    • Culture-independent methods for identifying microbial communities in cheese
    • Jany J.L., and Barbier G. Culture-independent methods for identifying microbial communities in cheese. Food Microbiol. 25 (2008) 839-848
    • (2008) Food Microbiol. , vol.25 , pp. 839-848
    • Jany, J.L.1    Barbier, G.2
  • 20
    • 6944223070 scopus 로고    scopus 로고
    • Guidelines for monitoring bulk tank milk somatic cell and bacterial counts
    • Jayarao B.M., Pillai S.R., Sawant A.A., Wolfgang D.R., and Hegde N.V. Guidelines for monitoring bulk tank milk somatic cell and bacterial counts. J. Dairy Sci. 87 (2004) 3561-3573
    • (2004) J. Dairy Sci. , vol.87 , pp. 3561-3573
    • Jayarao, B.M.1    Pillai, S.R.2    Sawant, A.A.3    Wolfgang, D.R.4    Hegde, N.V.5
  • 21
    • 40949141953 scopus 로고    scopus 로고
    • Detection and identification of enterohemorragic Escherichia coli O157:H7 and Vibrio cholerae O139 using oligonucleotide microarray
    • Jin D.Z., Xu X.J., Chen S.H., Wen S.Y., Ma X.E., Zhang Z., Lin F., and Wang S.Q. Detection and identification of enterohemorragic Escherichia coli O157:H7 and Vibrio cholerae O139 using oligonucleotide microarray. Infect. Agent Cancer 2 (2007) 23
    • (2007) Infect. Agent Cancer , vol.2 , pp. 23
    • Jin, D.Z.1    Xu, X.J.2    Chen, S.H.3    Wen, S.Y.4    Ma, X.E.5    Zhang, Z.6    Lin, F.7    Wang, S.Q.8
  • 22
    • 33845679057 scopus 로고    scopus 로고
    • A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens
    • Kostić T., Weilharter A., Rubino S., Delogu G., Uzzau S., Rudi K., Sessitsch A., and Bodrossy L. A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens. Anal. Biochem. 360 (2007) 244-254
    • (2007) Anal. Biochem. , vol.360 , pp. 244-254
    • Kostić, T.1    Weilharter, A.2    Rubino, S.3    Delogu, G.4    Uzzau, S.5    Rudi, K.6    Sessitsch, A.7    Bodrossy, L.8
  • 24
    • 51649116822 scopus 로고    scopus 로고
    • ProbeCheck-a central resource for evaluating oligonucleotide probe coverage and specificity
    • Loy A., Arnold R., Tischler P., Rattei T., Wagner M., and Horn M. ProbeCheck-a central resource for evaluating oligonucleotide probe coverage and specificity. Environ. Microbiol. 10 (2008) 2894-2896
    • (2008) Environ. Microbiol. , vol.10 , pp. 2894-2896
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 25
    • 40649112042 scopus 로고    scopus 로고
    • Impact of bacterial genomics on determining quality and safety in the dairy production chain
    • Marco M.L., and Wells-Bennik M.H.J. Impact of bacterial genomics on determining quality and safety in the dairy production chain. Int. Dairy J. 18 (2008) 486-495
    • (2008) Int. Dairy J. , vol.18 , pp. 486-495
    • Marco, M.L.1    Wells-Bennik, M.H.J.2
  • 27
    • 33644748109 scopus 로고    scopus 로고
    • Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridisation
    • Myers K.M., Gaba J., and Al-Khaldi S.F. Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridisation. Mol. Cell. Probes 20 (2006) 71-80
    • (2006) Mol. Cell. Probes , vol.20 , pp. 71-80
    • Myers, K.M.1    Gaba, J.2    Al-Khaldi, S.F.3
  • 28
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
    • Peplies J., Glöckner F.O., and Amann R. Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol. 69 (2003) 1397-1407
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glöckner, F.O.2    Amann, R.3
  • 29
    • 0024553747 scopus 로고
    • Rapid extraction of bacteria genomic DNA with guanidium thiocyanate
    • Pitcher D.G., Saunders N.A., and Owen R.J. Rapid extraction of bacteria genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8 (1989) 151-156
    • (1989) Lett. Appl. Microbiol. , vol.8 , pp. 151-156
    • Pitcher, D.G.1    Saunders, N.A.2    Owen, R.J.3
  • 30
    • 0036693202 scopus 로고    scopus 로고
    • Application of a convenient DNA extraction method and multiplex PCR for the direct detection of Staphylococcus aureus and Yersinia enterocolitica in milk samples
    • Ramesh A., Padmapriya B.P., Chandrashekar A., and Varadaraj M.C. Application of a convenient DNA extraction method and multiplex PCR for the direct detection of Staphylococcus aureus and Yersinia enterocolitica in milk samples. Mol. Cell Probes 16 (2002) 307-314
    • (2002) Mol. Cell Probes , vol.16 , pp. 307-314
    • Ramesh, A.1    Padmapriya, B.P.2    Chandrashekar, A.3    Varadaraj, M.C.4
  • 31
    • 34548447172 scopus 로고    scopus 로고
    • Detection and identification of Salmonella typhimurium in bovine diarrhoeic fecal samples by immunomagnetic separation and multiplex PCR assay
    • Salehi T.Z., Tadjbakhsh H., Atashparvar N., Nadalian M.G., and Mahzounieh M.R. Detection and identification of Salmonella typhimurium in bovine diarrhoeic fecal samples by immunomagnetic separation and multiplex PCR assay. Zoonoses Public Health 54 (2007) 231-236
    • (2007) Zoonoses Public Health , vol.54 , pp. 231-236
    • Salehi, T.Z.1    Tadjbakhsh, H.2    Atashparvar, N.3    Nadalian, M.G.4    Mahzounieh, M.R.5
  • 32
    • 34548855035 scopus 로고    scopus 로고
    • Evaluation of a cytolethal distending toxin (cdt) gene-based species-specific multiplex PCR assay for the identification of Campylobacter strains isolated from poultry in Thailand
    • Samosornsuk W., Asakura M., Yoshida E., Taguchi T., Nishimura K., Eampokalap B., Phongsisay V., Chaicumpa W., and Yamasaki S. Evaluation of a cytolethal distending toxin (cdt) gene-based species-specific multiplex PCR assay for the identification of Campylobacter strains isolated from poultry in Thailand. Microbiol. Immunol. 51 (2007) 909-917
    • (2007) Microbiol. Immunol. , vol.51 , pp. 909-917
    • Samosornsuk, W.1    Asakura, M.2    Yoshida, E.3    Taguchi, T.4    Nishimura, K.5    Eampokalap, B.6    Phongsisay, V.7    Chaicumpa, W.8    Yamasaki, S.9
  • 34
    • 34248179977 scopus 로고    scopus 로고
    • Unravelling microbial communities with DNA-microarrays: challenges and future directions
    • Wagner M., Smidt H., Loy A., and Zhou J. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb. Ecol. 53 (2007) 498-506
    • (2007) Microb. Ecol. , vol.53 , pp. 498-506
    • Wagner, M.1    Smidt, H.2    Loy, A.3    Zhou, J.4
  • 35
    • 0033989325 scopus 로고    scopus 로고
    • Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electroforesis and species-specific PCR primers
    • Walter J., Tannock G.W., Tilsala-Timisjarvi A., Rodtong S., Loach D.M., Munro K., and Alatossava T. Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electroforesis and species-specific PCR primers. Appl. Environ. Microbiol. 66 (2000) 297-303
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 297-303
    • Walter, J.1    Tannock, G.W.2    Tilsala-Timisjarvi, A.3    Rodtong, S.4    Loach, D.M.5    Munro, K.6    Alatossava, T.7
  • 36
    • 52049103837 scopus 로고    scopus 로고
    • Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria
    • Weber D.G., Sahm K., Polen T., Wendisch V.F., and Antranikian G. Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. J. Appl. Microbiol. 105 (2008) 951-962
    • (2008) J. Appl. Microbiol. , vol.105 , pp. 951-962
    • Weber, D.G.1    Sahm, K.2    Polen, T.3    Wendisch, V.F.4    Antranikian, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.