DNA microarray for tracing Salmonella in the feed chain

International Journal of Food Microbiology

Volumn 145, Issue SUPPL. 1, 2011, Pages

  Koyuncu, Sevinc ^a   Andersson, Gunnar ^a   Vos, Pieter ^b   Häggblom, Per ^a  

^a NATIONAL VETERINARY INSTITUTE   (Sweden)

^b Check Points bv   (Netherlands)

Author keywords

Feed chain; Microarray; Salmonella; Tracing; Typing methods

Indexed keywords

ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; DNA MICROARRAY; FALSE NEGATIVE RESULT; FOOD CONTAMINATION; NONHUMAN; SALMONELLA; SALMONELLA ENTERICA; SALMONELLA TYPHIMURIUM; SENSITIVITY AND SPECIFICITY; SEROTYPE;

ANIMAL FEED; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SALMONELLA; SEROTYPING;

ANIMALIA; MULTIPLE SCLEROSIS ASSOCIATED RETROVIRUS; SALMONELLA;

EID: 79953041520     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2010.07.012     Document Type: Article

References (26)

1. Alcaine S.D., Soyer Y., Warnick L.D., Su W.L., Sukhnanand S., Richards J., Fortes E.D., McDonough P., Root T.P., Dumas N.B., Grohn Y., Wiedmann M. Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations. Appl. Environ. Microbiol. 2006, 72:7575-7585.
2. Alvarez J., Porwollik S., Laconcha I., Gisakis V., Vivanco A.B., Gonzalez I., Echenagusia S., Zabala N., Blackmer F., McClelland M., Rementeria A., Garaizar J. Detection of a Salmonella enterica serovar California strain spreading in Spanish feed mills and genetic characterization with DNA microarrays. Appl. Environ. Microbiol. 2003, 69:7531-7534.
3. Anonymous Microbiology of food and animal feeding stuffs - horizontal method for the detection of Salmonella spp., ISO 6579:2002 E standard. ISO Central Secretariat 1, rue de Varembé, CH.1211, Genéve 20, Switzerland 2002, 4th ed.
4. Anonymous. 2002b. Protocol for the validation of alternative microbiological methods. NV-DOC.D-20021022 In: NordVal, (Ed.), Søborg, Denmark.
5. Anonymous The community summary report on trends and sources of zoonoses, zoonotic agents, antimicrobial resistance and food borne outbreaks in the European Union in 2005. EFSA J. 2006, 94.
6. Anonymous Detection of Salmonella spp. in animal faeces and in samples from the primary production stage. Draft Amendment ISO 6579: 2002/amendedDAmd 1, (2006-09-12) Amendment 1 Annex D 2006.
7. Anonymous Scientific opinion of the panel on biological hazards on a request from the health and consumer protection, directorate general, European Commission on microbiological risk assessment in feedingstuffs for food producing animals. EFSA J. 2008, 720:1-84.
8. Anonymous The Community Summary Report on food-borne outbreaks in the European Union in 2007. EFSA J. 2009, 271.
9. Anonymous EFSA Panel on biological hazards; scientific opinion on a quantitative microbiological risk assessment of Salmonella in slaughter and breeder pigs. EFSA J. 2010, 8(4):1547. 88pp.
10. Manual of Clinical Microbiology 2003, Vol. 1. ASM Press, Washington, D.C. C.A. Bopp, F.W. Brenner, P.I. Fields, J.G. Wells, N.A. Stockbine (Eds.).
11. Chan K., Baker S., Kim C.C., Detweiler C.S., Dougan G., Falkow S. Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray. J. Bacteriol. 2003, 185:553-563.
12. Cohen J. A coefficient of agreement for nominal scales. Educ. Psychol. Meas. 1960, 20:213-220.
13. Foley S.L., Zhao S., Walker R.D. Comparison of molecular typing methods for the differentiation of Salmonella foodborne pathogens. Foodborne Pathog. Dis. 2007, 4:253-276.
14. Jarquin R., Hanning I., Ahn S., Ricke S.C. Development of rapid detection and genetic characterization of Salmonella in poultry breeder feeds. Sensors 2009, 9:5308-5323.
15. Koyuncu S., Haggblom P. A comparative study of cultural methods for the detection of Salmonella in feed and feed ingredients. BMC Vet. Res. 2009, 5:6.
16. Koyuncu S., Andersson M.G., Haggblom P. Accuracy and sensitivity of commercial PCR-based methods for detection of Salmonella enterica in feed. Appl. Environ. Microbiol. 2010, 76:2815-2822.
17. Lan R., Reeves P.R., Octavia S. Population structure, origins and evolution of major Salmonella enterica clones. Infect. Genet. Evol. 2009, 9:996-1005.
18. Maciorowski K.G., Herrera P., Jones F.T., Pillai S.D., Ricke S.C. Cultural and immunological detection methods for Salmonella spp. in animal feeds - a review. Vet. Res. Commun. 2006, 30:127-137.
19. Majtan T., Majtanova L., Timko J., Majtan V. Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains. J. Antimicrob. Chemother. 2007, 60:937-946.
20. Porwollik S., Santiviago C.A., Cheng P., Florea L., McClelland M. Differences in gene content between Salmonella enterica serovar enteritidis isolates and comparison to closely related serovars gallinarum and dublin. J. Bacteriol. 2005, 187:6545-6555.
21. Rasooly A., Herold K.E. Food microbial pathogen detection and analysis using DNA microarray technologies. Foodborne Pathog. Dis. 2008, 5:531-550.
22. Ross I.L., Heuzenroeder M.W. Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar typhimurium by the multiple amplification of phage locus typing technique. J. Clin. Microbiol. 2005, 43:1604-1611.
23. Ross I.L., Heuzenroeder M.W. A comparison of two PCR-based typing methods with pulsed-field gel electrophoresis in Salmonella enterica serovar Enteritidis. Int. J. Med. Microbiol. 2009, 299:410-420.
24. Salomonsson A.C., Aspán A., Johansson S., Heino A., Häggblom P. Salmonella detection by polymerase chain reaction after pre-enrichment of feed samples. J. Rapid Methods Autom. Microbiol. 2005, 13:96-110.
25. Wattiau P., Van Hessche M., Schlicker C., Vander Veken H., Imberechts H. Comparison of classical serotyping and PremiTest assay for routine identification of common Salmonella enterica serovars. J. Clin. Microbiol. 2008, 46:4037-4040.
26. Wattiau P., Weijers T., Andreoli P., Schliker C., Veken H.V., Maas H.M., Verbruggen A.J., Heck M.E., Wannet W.J., Imberechts H., Vos P. Evaluation of the Premi Test Salmonella, a commercial low-density DNA microarray system intended for routine identification and typing of Salmonella enterica. Int. J. Food Microbiol. 2008, 123:293-298.