A comparison of two PCR-based typing methods with pulsed-field gel electrophoresis in Salmonella enterica serovar Enteritidis

International Journal of Medical Microbiology

Volumn 299, Issue 6, 2009, Pages 410-420

  Ross, Ian L ^a   Heuzenroeder, Michael W ^a  

^a INSTITUTE OF MEDICAL AND VETERINARY SCIENCE   (Australia)

Author keywords

MAPLT; MLVA; PFGE; Salmonella Enteritidis

Indexed keywords

ALLELE; ARTICLE; AUSTRALIA; BACTERIAL STRAIN; BACTERIOPHAGE TYPING; BACTERIUM DETECTION; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE IDENTIFICATION; GENE LOCUS; GENETIC VARIABILITY; INTERMETHOD COMPARISON; MOLECULAR TYPING; MULTIPLE AMPLIFICATION O FPHAGE LOCI TYPING; MULTIPLE LOCUS VARIABLE NUMBER OF TANDEM REPEAT ANALYSIS; NONHUMAN; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; SALMONELLA ENTERITIDIS; SALMONELLA TYPHIMURIUM; SEROTYPE; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; AUSTRALIA; BACTERIAL TYPING TECHNIQUES; BACTERIOPHAGE TYPING; CLUSTER ANALYSIS; DNA FINGERPRINTING; ELECTROPHORESIS, GEL, PULSED-FIELD; HUMANS; MOLECULAR EPIDEMIOLOGY; POLYMERASE CHAIN REACTION; SALMONELLA ENTERITIDIS; SALMONELLA INFECTIONS; SENSITIVITY AND SPECIFICITY;

EID: 68749119584     PISSN: 14384221     EISSN: 16180607     Source Type: Journal    
DOI: 10.1016/j.ijmm.2008.12.002     Document Type: Article

References (35)

1. Australian Salmonella Reference Centre, 2007. 2007 Annual Report. Institute of Medical and Veterinary Science, Adelaide, South Australia.
2. Badrinath P., Sundkvist T., Mahgoub H., and Kent R. An outbreak of Salmonella enteritidis phage type 34a infection associated with a Chinese restaurant in Suffolk, United Kingdom. BMC Public Health 4 (2004) 40
3. Beranek A., Mikula C., Rabold P., Arnhold D., Berghold C., Lederer I., Allerberger F., and Kornschober C. Multiple-locus variable-number tandem repeat analysis for subtyping of Salmonella enterica subsp. enterica serovar Enteritidis. Int. J. Med. Microbiol. (2008) 10.1016/j.ijmm.2008.06.002
4. Boxrud D., Pederson-Gulrud K., Wotton J., Medus C., Lyszkowicz E., Besser J., and Bartkus J.M. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J. Clin. Microbiol. 45 (2007) 536-543
5. Brüssow H., Canchaya C., and Hardt W.-D. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Rev. 68 (2004) 560-602
6. Cho S., Boxrud D.J., Bartkus J.M., Whittam T.S., and Saeed M. Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR. FEMS Microbiol. Lett. 275 (2007) 16-23
7. Cooke F.J., Wain J., Fookes M., Ivens A., Thomson N., Brown D.J., Threlfall E.J., Gunn G., Foster G., and Dougan G. Prophage sequences defining hotspots of genomic variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates. J. Clin. Microbiol. 45 (2007) 2590-2598
8. Davies R.H., and Breslin M. Investigations into possible alternative decontamination methods for Salmonella enteritidis on the surface of table eggs. J. Vet. Med. Series B 50 (2003) 38-41
9. dos Santos L.R., do Nascimento V.P., de Oliveira S.D., Rodrigues D.P., dos Reis E.M.F., Seki L.M., Ribeiro A.R., and Fernandes S.A. Phage types of Salmonella enteritidis isolated from clinical and food samples, and from broiler carcasses in southern Brazil. Rev. Inst. Med. Trop. S. Paulo 45 (2003) 1-4
10. Drahovská H., Mikasová E., Szemes T., Ficek A., Sásik M., Majtán V., and Turňa J. Variability in occurrence of multiple phage genes in Salmonella Typhimurium strains isolated in Slovak Republic. FEMS Microbiol. Lett. 270 (2007) 237-244
11. Fernandes S.A., Ghilardi A.C.R., Tavechio A.T., Machado A.M.O., and Pignatari A.C.C. Phenotypic and molecular characterization of Salmonella Enteritidis strains isolated in São Paulo, Brazil. Rev. Inst. Med. Trop. S. Paulo 45 (2003) 59-63
12. Figuerosa-Bossi N., and Bossi L. Resuscitation of a defective prophage on Salmonella cocultures. J. Bacteriol. 186 (2004) 4038-4041
13. Haeghebaert S., Sulem P., Deroudille L., Vanneroy-Adenot E., Bagnis O., Bouvet P., Grimont F., Brisabois A., Le Querrec F., Hervy C., Espie E., de Valk H., and Vaillant V. Two outbreaks of Salmonella enteritidis phage type 8 linked to the consumption of Cantal cheese made with raw milk, France, 2001. Eur. Comm. Dis. Bull. 8 (2003) 151-156
14. Hopkins K.L., Maguire C., Best E., Liebana E., and Threlfell E.J. Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium. J. Clin. Microbiol. 45 (2007) 3058-3061
15. Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity. J. Clin. Microbiol. 26 (1988) 2465-2466
16. Lindstedt B.-A., Heir E., Gjernes E., and Kappperud G. DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J. Clin. Microbiol. 41 (2003) 1469-1479
17. Lindstedt B.-A., Vardund T., Aas L., and Kapperud G. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J. Microbiol. Methods 59 (2004) 163-172
18. Liu Y., Lee M.-A., Ooi E.-E., Mavis Y., Tan A.-L., and Quek H.-H. Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats. J. Clin. Microbiol. 41 (2003) 4388-4394
19. Malorny B., Junker E., and Helmuth R. Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serovar Enteritidis. BMC Microbiol. 8 (2008) 84
20. Maslow J.N., Slutsky A.M., and Arbeit R.D. Application of pulsed-field electrophoresis to molecular epidemiology. In: Persing D.H., Smith T.F., Tenover F.C., and White T.J. (Eds). Diagnostic Molecular Microbiology Principles and Applications (1993), American Society for Microbiology, Washington D.C. 563-572
21. Matsui T., Suzuki S., Takahashi H., Ohyama T., Kobayashi J., Izumiya H., Watanabe H., Kasuga F., Kijima H., Shibayta K., and Okabe N. Salmonella Enteritidis outbreak associated with a school-lunch dessert: cross-contamination and a long incubation period. Epidem. Infect. 132 (2004) 873-879
22. Mikasová E., Drahovská H., Szemes T., Kuchta T., Karpíšková R., Sásik M., and Turňa J. Characterization of Salmonella enterica serovar Typhimurium strains of veterinary origin by molecular typing methods. Vet. Microbiol. 109 (2005) 113-120
23. Naglić T., Šeol B., Bedeković M., Grabarević Z., and Listeš E. Outbreak of Salmonella Enteritidis and isolation of Salmonella Sofia in chinchillas (Chinchilla laniger). Vet. Rec. 152 (2003) 719-720
24. Patrick M.E., Adcock P.M., Gomez T.M., Altekruse S.F., Holland B.H., Tauxe R.V., and Swerdlow D.L. Salmonella Enteritidis infections, United States, 1985-1999. Emerg. Infect. Dis. 10 (2004) 1-7
25. Ramisse V., Houssu P., Hernandez E., Denoeud F., Hilaire V., Lisanti O., Ramisse F., Vavallo J.-D., and Vergnaud G. Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J. Clin. Microbiol. 42 (2004) 5722-5730
26. Ross I.L., and Heuzenroeder M.W. Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar Typhimurium by the multiple amplification of phage locus typing technique. J. Clin. Microbiol. 43 (2005) 1604-1611
27. Ross I.L., and Heuzenroeder M.W. A comparison of three molecular typing methods for the discrimination of Salmonella enterica serovar Infantis. FEMS Immunol. Med. Microbiol. 53 (2008) 375-384
28. Ross I.L., Parkinson I.H., and Heuzenroeder M.W. The use of MAPLT and MLVA analyses of phenotypically closely related isolates of Salmonella enterica serovar Typhimurium and comparison with PFGE. Int. J. Med. Microbiol. 299 (2009) 37-41
29. Schroeder C.M., Naugle A.L., Schlosser W.D., Hogue A.T., Angulo F.J., Rose J.S., Ebel E.D., Disney D.T., Holt K.G., and Goldman D.P. Estimate of illness from Salmonella Enteritidis in eggs, United States, 2000. Emerg. Infect. Dis. 11 (2005) 113-115
30. Tassou C.C., Lamibropoulou K., and Nychas G.J. Effect of prestorage conditions on the survival of Salmonella enteritidis PT4 and Listeria monocytogenes on fresh marine aquaculture fish. J. Food Protect. 67 (2004) 193-198
31. Tenover F.C., Arbeit R.D., Goering R.V., Mickelsen P.A., Murray B.E., Persing D.H., and Swaminathan B. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 33 (1995) 2233-2239
32. Torpdahl M., Sørensen G., Lindstedt B.-A., and Nielsen E.M. Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections. Emerg. Infect. Dis. 13 (2007) 388-395
33. Van Belkum A., Scherer S., van Alphen L., and Verbrugh H. Short-sequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62 (1998) 275-293
34. Ward L.R., de Sa J.D.H., and Rowe B. A phage-typing system for Salmonella enteritidis. Epidem. Infect. 99 (1987) 291-294
35. Weir B.S. Genetic Data Analysis: Methods for Discrete Population Genetic Data Analysis (1990), Sinauer Associates Inc., Mass Sunderland