-
2
-
-
0037223706
-
Comparing the ex vivo fitness of CCR5-tropic human immunodeficiency virus type 1 isolates of subtypes B and C
-
DOI 10.1128/JVI.77.2.1021-1038.2003
-
Ball, S. C., et al. 2003. Comparing the ex vivo fitness of CCR5-tropic human immunodeficiency virus type 1 isolates of subtypes B and C. J. Virol. 77:1021-1038. (Pubitemid 36055524)
-
(2003)
Journal of Virology
, vol.77
, Issue.2
, pp. 1021-1038
-
-
Ball, S.C.1
Abraha, A.2
Collins, K.R.3
Marozsan, A.J.4
Baird, H.5
Quinones-Mateu, M.E.6
Penn-Nicholson, A.7
Murray, M.8
Richard, N.9
Lobritz, M.10
Zimmerman, P.A.11
Kawamura, T.12
Blauvelt, A.13
Arts, E.J.14
-
3
-
-
78049495989
-
Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection
-
Brockman, M., et al. 2010. Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. J. Virol. 84:11937-11949.
-
(2010)
J. Virol.
, vol.84
, pp. 11937-11949
-
-
Brockman, M.1
-
4
-
-
36048995423
-
Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A
-
DOI 10.1128/JVI.01369-07
-
Brockman, M. A., et al. 2007. Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A. J. Virol. 81:12608-12618. (Pubitemid 350085874)
-
(2007)
Journal of Virology
, vol.81
, Issue.22
, pp. 12608-12618
-
-
Brockman, M.A.1
Schneidewind, A.2
Lahaie, M.3
Schmidt, A.4
Miura, T.5
DeSouza, I.6
Ryvkin, F.7
Derdeyn, C.A.8
Allen, S.9
Hunter, E.10
Mulenga, J.11
Goepfert, P.A.12
Walker, B.D.13
Allen, T.M.14
-
5
-
-
30644465555
-
Use of a novel GFP reporter cell line to examine replication capacity of CXCR4- and CCR5-tropic HIV-1 by flow cytometry
-
Brockman, M. A., G. O. Tanzi, B. D. Walker, and T. M. Allen. 2006. Use of a novel GFP reporter cell line to examine replication capacity of CXCR4- and CCR5-tropic HIV-1 by flow cytometry. J. Virol. Methods 131:134-142.
-
(2006)
J. Virol. Methods
, vol.131
, pp. 134-142
-
-
Brockman, M.A.1
Tanzi, G.O.2
Walker, B.D.3
Allen, T.M.4
-
6
-
-
70049113799
-
Impact of select immunologic and virologic biomarkers on CD4 cell count decrease in chronic HIV-1 subtype C infection: Results from Sinikithemba cohort, Durban, South Africa
-
Brumme, Z., et al. 2009. Impact of select immunologic and virologic biomarkers on CD4 cell count decrease in chronic HIV-1 subtype C infection: results from Sinikithemba cohort, Durban, South Africa. Clin. Infect. Dis. 49:956-964.
-
(2009)
Clin. Infect. Dis.
, vol.49
, pp. 956-964
-
-
Brumme, Z.1
-
7
-
-
50949117244
-
Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection
-
Brumme, Z. L., et al. 2008. Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection. J. Virol. 82:9216-9227.
-
(2008)
J. Virol.
, vol.82
, pp. 9216-9227
-
-
Brumme, Z.L.1
-
8
-
-
0242363243
-
Relationship between in Vitro Human Immunodeficiency Virus Type 1 Replication Rate and Virus Load in Plasma
-
DOI 10.1128/JVI.77.22.12105-12112.2003
-
Campbell, T. B., K. Schneider, T. Wrin, C. J. Petropoulos, and E. Connick. 2003. Relationship between in vitro human immunodeficiency virus type 1 replication rate and virus load in plasma. J. Virol. 77:12105-12112. (Pubitemid 37339863)
-
(2003)
Journal of Virology
, vol.77
, Issue.22
, pp. 12105-12112
-
-
Campbell, T.B.1
Schneider, K.2
Wrin, T.3
Petropoulos, C.J.4
Connick, E.5
-
9
-
-
0038581912
-
The influence of HLA genotype on AIDS
-
Carrington, M., and S. J. O'Brien. 2003. The influence of HLA genotype on AIDS. Annu. Rev. Med. 54:535-551.
-
(2003)
Annu. Rev. Med.
, vol.54
, pp. 535-551
-
-
Carrington, M.1
O'Brien, S.J.2
-
10
-
-
42949092720
-
Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage
-
Chopera, D. R., et al. 2008. Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage. PLoS Pathog. 4:e1000033.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Chopera, D.R.1
-
11
-
-
85047684409
-
Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703-positive individuals and their transmission recipients
-
Crawford, H., et al. 2009. Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703-positive individuals and their transmission recipients. J. Exp. Med. 206:909-919.
-
(2009)
J. Exp. Med.
, vol.206
, pp. 909-919
-
-
Crawford, H.1
-
12
-
-
78651385721
-
+ T-cell escape mutations and covarying HLA-independent polymorphisms
-
+ T-cell escape mutations and covarying HLA-independent polymorphisms. J. Virol. 85:1384-1390.
-
(2011)
J. Virol.
, vol.85
, pp. 1384-1390
-
-
Crawford, H.1
-
13
-
-
20544475417
-
Viral and host factors in the pathogenesis of HIV infection
-
Derdeyn, C. A., and G. Silvestri. 2005. Viral and host factors in the pathogenesis of HIV infection. Curr. Opin. Immunol. 17:366-373.
-
(2005)
Curr. Opin. Immunol.
, vol.17
, pp. 366-373
-
-
Derdeyn, C.A.1
Silvestri, G.2
-
14
-
-
59749085611
-
HLA-associated clinical progression correlates with epitope reversion rates in early human immunodeficiency virus infection
-
Duda, A., et al. 2009. HLA-associated clinical progression correlates with epitope reversion rates in early human immunodeficiency virus infection. J. Virol. 83:1228-1239.
-
(2009)
J. Virol.
, vol.83
, pp. 1228-1239
-
-
Duda, A.1
-
15
-
-
0041828179
-
Dynamics of HIV viremia and antibody seroconversion in plasma donors: Implications for diagnosis and staging of primary HIV infection
-
DOI 10.1097/00002030-200309050-00005
-
Fiebig, E. W., et al. 2003. Dynamics of HIV viremia and antibody seroconversion in plasma donors: implications for diagnosis and staging of primary HIV infection. AIDS 17:1871-1879. (Pubitemid 37070272)
-
(2003)
AIDS
, vol.17
, Issue.13
, pp. 1871-1879
-
-
Fiebig, E.W.1
Wright, D.J.2
Rawal, B.D.3
Garrett, P.E.4
Schumacher, R.T.5
Peddada, L.6
Heldebrant, C.7
Smith, R.8
Conrad, A.9
Kleinman, S.H.10
Busch, M.P.11
-
16
-
-
28644451011
-
AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis
-
Gao, X., et al. 2005. AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis. Nat. Med. 11:1290-1292.
-
(2005)
Nat. Med.
, vol.11
, pp. 1290-1292
-
-
Gao, X.1
-
17
-
-
43549109265
-
Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
-
Goepfert, P. A., et al. 2008. Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients. J. Exp. Med. 205:1009-1017.
-
(2008)
J. Exp. Med.
, vol.205
, pp. 1009-1017
-
-
Goepfert, P.A.1
-
18
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
Goonetilleke, N., et al. 2009. The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J. Exp. Med. 206:1253-1272.
-
(2009)
J. Exp. Med.
, vol.206
, pp. 1253-1272
-
-
Goonetilleke, N.1
-
19
-
-
0030446464
-
Methods for comparing a DNA sequence with a protein sequence
-
Huang, X., and J. Zhang. 1996. Methods for comparing a DNA sequence with a protein sequence. Comput. Appl. Biosci. 12:497-506.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 497-506
-
-
Huang, X.1
Zhang, J.2
-
21
-
-
63949087100
-
Adaptation of HIV-1 to human leukocyte antigen class I
-
Kawashima, Y., et al. 2009. Adaptation of HIV-1 to human leukocyte antigen class I. Nature 458:641-645.
-
(2009)
Nature
, vol.458
, pp. 641-645
-
-
Kawashima, Y.1
-
22
-
-
10644267588
-
Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA
-
Kiepiela, P., et al. 2004. Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA. Nature 432:769-774.
-
(2004)
Nature
, vol.432
, pp. 769-774
-
-
Kiepiela, P.1
-
23
-
-
34547403540
-
Predictors of disease progression in HIV infection: A review
-
Langford, S. E., J. Ananworanich, and D. A. Cooper. 2007. Predictors of disease progression in HIV infection: a review. AIDS Res. Ther. 4:11.
-
(2007)
AIDS Res. Ther.
, vol.4
, pp. 11
-
-
Langford, S.E.1
Ananworanich, J.2
Cooper, D.A.3
-
24
-
-
84868940161
-
Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics
-
Lassen, K. G., et al. 2009. Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics. PLoS Pathog. 5:e1000377.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Lassen, K.G.1
-
25
-
-
18844372793
-
Differences in the fitness of two diverse wild-type human immunodeficiency virus type 1 isolates are related to the efficiency of cell binding and entry
-
DOI 10.1128/JVI.79.11.7121-7134.2005
-
Marozsan, A. J., et al. 2005. Differences in the fitness of two diverse wild-type human immunodeficiency virus type 1 isolates are related to the efficiency of cell binding and entry. J. Virol. 79:7121-7134. (Pubitemid 40684493)
-
(2005)
Journal of Virology
, vol.79
, Issue.11
, pp. 7121-7134
-
-
Marozsan, A.J.1
Moore, D.M.2
Lobritz, M.A.3
Fraundorf, E.4
Abraha, A.5
Reeves, J.D.6
Arts, E.J.7
-
26
-
-
33645240933
-
Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1
-
Martinez-Picado, J., et al. 2006. Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. J. Virol. 80:3617-3623.
-
(2006)
J. Virol.
, vol.80
, pp. 3617-3623
-
-
Martinez-Picado, J.1
-
27
-
-
50149117938
-
Central role of reverting mutations in HLA associations with human immunodeficiency virus set point
-
Matthews, P. C., et al. 2008. Central role of reverting mutations in HLA associations with human immunodeficiency virus set point. J. Virol. 82:8548-8559.
-
(2008)
J. Virol.
, vol.82
, pp. 8548-8559
-
-
Matthews, P.C.1
-
28
-
-
58149398654
-
HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1
-
Miura, T., et al. 2009. HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1. J. Virol. 83:140-149.
-
(2009)
J. Virol.
, vol.83
, pp. 140-149
-
-
Miura, T.1
-
29
-
-
77954512323
-
Impaired replication capacity of acute/early viruses in persons who become HIV controllers
-
Miura, T., et al. 2010. Impaired replication capacity of acute/early viruses in persons who become HIV controllers. J. Virol. 84:7581-7591.
-
(2010)
J. Virol.
, vol.84
, pp. 7581-7591
-
-
Miura, T.1
-
30
-
-
73349124525
-
Virological, immune and host genetics markers in the control of HIV infection
-
Mothe, B., J. Ibarrondo, A. Llano, and C. Brander. 2009. Virological, immune and host genetics markers in the control of HIV infection. Dis. Markers 27:105-120.
-
(2009)
Dis. Markers
, vol.27
, pp. 105-120
-
-
Mothe, B.1
Ibarrondo, J.2
Llano, A.3
Brander, C.4
-
31
-
-
38149018633
-
Targeting of a CD8 T cell env epitope presented by HLA-B*5802 is associated with markers of HIV disease progression and lack of selection pressure
-
Ngumbela, K. C., et al. 2008. Targeting of a CD8 T cell env epitope presented by HLA-B*5802 is associated with markers of HIV disease progression and lack of selection pressure. AIDS Res. Hum. Retroviruses 24:72-82.
-
(2008)
AIDS Res. Hum. Retroviruses
, vol.24
, pp. 72-82
-
-
Ngumbela, K.C.1
-
32
-
-
70349706018
-
Better control of early viral replication is associated with slower rate of elicited antiviral antibodies in the detuned enzyme immunoassay during primary HIV-1C infection
-
Novitsky, V., et al. 2009. Better control of early viral replication is associated with slower rate of elicited antiviral antibodies in the detuned enzyme immunoassay during primary HIV-1C infection. J. Acquir. Immune Defic. Syndr. 52:265-272.
-
(2009)
J. Acquir. Immune Defic. Syndr.
, vol.52
, pp. 265-272
-
-
Novitsky, V.1
-
33
-
-
70450192911
-
Timing constraints of in vivo Gag mutations during primary HIV-1 subtype C infection
-
Novitsky, V., et al. 2009. Timing constraints of in vivo Gag mutations during primary HIV-1 subtype C infection. PLoS One 4:e7727.
-
(2009)
PLoS One
, vol.4
-
-
Novitsky, V.1
-
34
-
-
64249109641
-
+ T cell dynamics in primary HIV-1 subtype C infection
-
+ T cell dynamics in primary HIV-1 subtype C infection. J. Acquir. Immune Defic. Syndr. 50:65-76.
-
(2009)
J. Acquir. Immune Defic. Syndr.
, vol.50
, pp. 65-76
-
-
Novitsky, V.1
-
35
-
-
78650084232
-
The major genetic determinants of HIV-1 control affect HLA class I peptide presentation
-
for the International HIV Controllers Study doi:10.1126/science.1195271
-
Pereyra, F., et. al, for the International HIV Controllers Study. 2010. The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science 330:1551-1557. doi:10.1126/science.1195271.
-
(2010)
Science
, vol.330
, pp. 1551-1557
-
-
Pereyra, F.1
-
36
-
-
72849140105
-
Replicative capacity of human immunodeficiency virus Type 1 transmitted from mother to child is associated with pediatric HIV-1 disease progression rate
-
Prado, J. G., et al. 2010. Replicative capacity of human immunodeficiency virus Type 1 transmitted from mother to child is associated with pediatric HIV-1 disease progression rate. J. Virol. 84:492-502.
-
(2010)
J. Virol.
, vol.84
, pp. 492-502
-
-
Prado, J.G.1
-
37
-
-
0033803642
-
A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression
-
Quiñones-Mateu, M. E., et al. 2000. A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression. J. Virol. 74:9222-9233.
-
(2000)
J. Virol.
, vol.74
, pp. 9222-9233
-
-
Quiñones-Mateu, M.E.1
-
38
-
-
38949168855
-
Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads
-
doi:10.1371/journal. pone.0001424
-
Rolland, M., et al. 2008. Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads. PLoS One 3:e1424. doi:10.1371/journal. pone.0001424.
-
(2008)
PLoS One
, vol.3
-
-
Rolland, M.1
-
40
-
-
43949094512
-
Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid
-
DOI 10.1128/JVI.02356-07
-
Schneidewind, A., et al. 2008. Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid. J. Virol. 82:5594-5605. (Pubitemid 351705266)
-
(2008)
Journal of Virology
, vol.82
, Issue.11
, pp. 5594-5605
-
-
Schneidewind, A.1
Brockman, M.A.2
Sidney, J.3
Wang, Y.E.4
Chen, H.5
Suscovich, T.J.6
Li, B.7
Adam, R.I.8
Allgaier, R.L.9
Mothe, B.R.10
Kuntzen, T.11
Oniangue-Ndza, C.12
Trocha, A.13
Yu, X.G.14
Brander, C.15
Sette, A.16
Walker, B.D.17
Allen, T.M.18
-
41
-
-
36048949732
-
Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication
-
DOI 10.1128/JVI.01543-07
-
Schneidewind, A., et al. 2007. Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in Gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication. J. Virol. 81:12382-12393. (Pubitemid 350085852)
-
(2007)
Journal of Virology
, vol.81
, Issue.22
, pp. 12382-12393
-
-
Schneidewind, A.1
Brockman, M.A.2
Yang, R.3
Adam, R.I.4
Li, B.5
Le, G.S.6
Rinaldo, C.R.7
Craggs, S.L.8
Allgaier, R.L.9
Power, K.A.10
Kuntzen, T.11
Tung, C.-S.12
LaBute, M.X.13
Mueller, S.M.14
Harrer, T.15
McMichael, A.J.16
Goulder, P.J.R.17
Aiken, C.18
Brander, C.19
Kelleher, A.D.20
Allen, T.M.21
more..
-
42
-
-
69249203739
-
Maternal transmission of human immunodeficiency virus escape mutations subverts HLA-B57 immunodominance but facilitates viral control in the haploidentical infant
-
Schneidewind, A., et al. 2009. Maternal transmission of human immunodeficiency virus escape mutations subverts HLA-B57 immunodominance but facilitates viral control in the haploidentical infant. J. Virol. 83:8616-8627.
-
(2009)
J. Virol.
, vol.83
, pp. 8616-8627
-
-
Schneidewind, A.1
-
43
-
-
0035826051
-
Initial plasma HIV-1 RNA levels and progression to AIDS in women and men
-
Sterling, T. R., et al. 2001. Initial plasma HIV-1 RNA levels and progression to AIDS in women and men. N. Engl. J. Med. 344:720-725.
-
(2001)
N. Engl. J. Med.
, vol.344
, pp. 720-725
-
-
Sterling, T.R.1
-
45
-
-
0036318823
-
Favorable and unfavorable HLA class I alleles and haplotypes in Zambians predominantly infected with clade C human immunodeficiency virus type 1
-
DOI 10.1128/JVI.76.16.8276-8284.2002
-
Tang, J., et al. 2002. Favorable and unfavorable HLA class I alleles and haplotypes in Zambians predominantly infected with clade C human immunodeficiency virus type 1. J. Virol. 76:8276-8284. (Pubitemid 34809082)
-
(2002)
Journal of Virology
, vol.76
, Issue.16
, pp. 8276-8284
-
-
Tang, J.1
Tang, S.2
Lobashevsky, E.3
Myracle, A.D.4
Fideli, U.5
Aldrovandi, G.6
Allen, S.7
Musonda, R.8
Kaslow, R.A.9
Zulu, I.10
Chomba, E.11
Haworth, A.12
Hahn, B.13
Gao, F.14
Kasolo, F.15
Hunter, E.16
Sabbaj, S.17
Mulligan, M.18
Walker, B.19
Addo, M.20
Altfelt, M.21
more..
-
46
-
-
70349293668
-
Impact of HLA in mother and child on disease progression of pediatric human immunodeficiency virus type 1 infection
-
Thobakgale, C. F., et al. 2009. Impact of HLA in mother and child on disease progression of pediatric human immunodeficiency virus type 1 infection. J. Virol. 83:10234-110244.
-
(2009)
J. Virol.
, vol.83
, pp. 10234-110244
-
-
Thobakgale, C.F.1
-
47
-
-
36348978140
-
+ T-cell activity is detectable from birth in the majority of in uteroinfected infants
-
+ T-cell activity is detectable from birth in the majority of in uteroinfected infants. J. Virol. 81:12775-12784.
-
(2007)
J. Virol.
, vol.81
, pp. 12775-12784
-
-
Thobakgale, C.F.1
-
48
-
-
44849132669
-
Establishing a cohort at high risk of HIV infection in South Africa: Challenges and experiences of the CAPRISA 002 acute infection study
-
van Loggerenberg, F., et al. 2008. Establishing a cohort at high risk of HIV infection in South Africa: challenges and experiences of the CAPRISA 002 acute infection study. PLoS One 3:e1954.
-
(2008)
PLoS One
, vol.3
-
-
Van Loggerenberg, F.1
-
49
-
-
77957194223
-
Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: Associations with HLA type and clinical parameters
-
Wright, J. K., et al. 2010. Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters. J. Virol. 84:10820-10831.
-
(2010)
J. Virol.
, vol.84
, pp. 10820-10831
-
-
Wright, J.K.1
|