Methods for comparing a dna sequence with a protein sequence

Bioinformatics

Volumn 12, Issue 6, 1996, Pages 497-506

  Huang, Xiaoqiu ^a   Zhang, Jinghui ^b  

^a Michigan Technological University ^*  (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COMPUTER MEMORY; COMPUTER PROGRAM; DNA SEQUENCE; INTRON; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; DNA; EVALUATION STUDIES; HUMANS; MOLECULAR SEQUENCE DATA; PROTEINS; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 0030446464     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/12.6.497     Document Type: Article

References (14)

1. Altschul.S.F., Gish.W., Miller.W., Myers, E.W. and Upman.DJ. (1990) Basic local alignment search tool. J. MoL Bioi, 215, 403,410.
2. Gelfand.M.S., Mironov, A.A. and Pevzner, PA. (1996) Gene recognition via spliced sequence alignment. Proc. Natl AcatL ScL USA, 93, 9061-9066.
3. Gotoh, O. (1982) An improved algorithm for matching biological sequences. J. Mol. BioL, 162, 703-708.
4. Guai, O. C. and Uberbacher, E.C. (1996) Alignments of DNA and protein sequences containing frameshift errors. Comput Applic. BioscL, 12, 31-40.
5. Henikoff, S. and HenikoffJ, G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad Sci USA, 89, 10915-10919.
6. Hirschberg.D.S. (1975) A linear space algorithm for computing maximal common subsequences. Commun. Assoc Compul Mach, 18, 341-343.
7. Huang, X. (1994) On global sequence alignment. Comput. Applic. BioscL, 10, 227-235.
8. Huan, X., Hardison, R.C. and Miller, W. (1990) A space-efficient algorithm for local similarities. Comput. Applic Biosc, 6, 373-381.
9. Johnston, M. et al (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science, 265, 2077-2082.
10. Myers, E.W. and Miller.W. (1988) Optimal alignments in linear space. Comput. Applic. BioscL, 4, 11-17.
11. Pearson, W.R. (1990) Rapid and sensitive sequence comparison with FAST? and FASTA. Methods Enzymol, 183, 63-98.
12. Pearson.W.R. and Lipman.D. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. ScL USA, 85, 2444-2448.
13. Smith.T.F. and Waterman.M.S. (1981) Identification of common molecular subsequences. J. MoL BioL, 147, 195-197.
14. States, DJ. and Botstein.D. (1991) Molecular sequence accuracy and the analysis of protein coding regions. Proc. Natl Acad. ScL USA, 88, 5518-5522.