-
1
-
-
0036923691
-
Regulation of subtelomeric silencing during stress response
-
DOI 10.1016/S1097-2765(02)00695-0
-
Ai W, Bertram PG, Tsang CK, Chan TF, Zheng XF (2002) Regulation of subtelomeric silencing during stress response. Mol Cell 10 : 1295-1305 (Pubitemid 36050872)
-
(2002)
Molecular Cell
, vol.10
, Issue.6
, pp. 1295-1305
-
-
Ai, W.1
Bertram, P.G.2
Tsang, C.K.3
Chan, T.-F.4
Zheng, X.F.S.5
-
2
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
DOI 10.1038/nature05632, PII NATURE05632
-
Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF (2007) Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446: 572-576 (Pubitemid 46514724)
-
(2007)
Nature
, vol.446
, Issue.7135
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
3
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
77955879115
-
Ume6 is required for the MATa/MAT{alpha}-cellular identity and transcriptional silencing in Kluyveromyces lactis
-
Barsoum E, Sjostrand JO, Astrom SU (2010) Ume6 is required for the MATa/MAT{alpha}-cellular identity and transcriptional silencing in Kluyveromyces lactis. Genetics 184: 999-1011
-
(2010)
Genetics
, vol.184
, pp. 999-1011
-
-
Barsoum, E.1
Sjostrand, J.O.2
Astrom, S.U.3
-
5
-
-
34247341747
-
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
-
Brickner DG, Cajigas I, Fondufe-Mittendorf Y, Ahmed S, Lee PC, Widom J, Brickner JH (2007) H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol 5: e81
-
(2007)
PLoS Biol
, vol.5
-
-
Brickner, D.G.1
Cajigas, I.2
Fondufe-Mittendorf, Y.3
Ahmed, S.4
Lee, P.C.5
Widom, J.6
Brickner, J.H.7
-
6
-
-
18844412748
-
Developmentally induced changes in transcriptional program alter spatial organization across chromosomes
-
DOI 10.1101/gad.1307205
-
Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA (2005) Developmentally induced changes in transcriptional program alter spatial organization across chromosomes. Genes Dev 19: 1188-1198 (Pubitemid 40696185)
-
(2005)
Genes and Development
, vol.19
, Issue.10
, pp. 1188-1198
-
-
Casolari, J.M.1
Brown, C.R.2
Drubin, D.A.3
Rando, O.J.4
Silver, P.A.5
-
7
-
-
2342501365
-
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
-
DOI 10.1016/S0092-8674(04)00448-9, PII S0092867404004489
-
Casolari JM, Brown CR, Komili S, West J, Hieronymus H, Silver PA (2004) Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117: 427-439 (Pubitemid 38610229)
-
(2004)
Cell
, vol.117
, Issue.4
, pp. 427-439
-
-
Casolari, J.M.1
Brown, C.R.2
Komili, S.3
West, J.4
Hieronymus, H.5
Silver, P.A.6
-
8
-
-
0034050798
-
Yeast heterochromatin is a dynamic structure that requires silencers continuously
-
Cheng TH, Gartenberg MR (2000) Yeast heterochromatin is a dynamic structure that requires silencers continuously. Genes Dev 14: 452-463 (Pubitemid 30131890)
-
(2000)
Genes and Development
, vol.14
, Issue.4
, pp. 452-463
-
-
Cheng, T.-H.1
Gartenberg, M.R.2
-
9
-
-
0034048339
-
Analysis of Sir2p domains required for rDNA and telomeric silencing in Saccharomyces cerevisiae
-
Cockell MM, Perrod S, Gasser SM (2000) Analysis of Sir2p domains required for rDNA and telomeric silencing in Saccharomyces cerevisiae. Genetics 154: 1069-1083 (Pubitemid 30140696)
-
(2000)
Genetics
, vol.154
, Issue.3
, pp. 1069-1083
-
-
Cockell, M.M.1
Perrod, S.2
Gasser, S.M.3
-
10
-
-
67149099680
-
Histone H4 lysine 16 acetylation regulates cellular lifespan
-
Dang W, Steffen KK, Perry R, Dorsey JA, Johnson FB, Shilatifard A, Kaeberlein M, Kennedy BK, Berger SL (2009) Histone H4 lysine 16 acetylation regulates cellular lifespan. Nature 459: 802-807
-
(2009)
Nature
, vol.459
, pp. 802-807
-
-
Dang, W.1
Steffen, K.K.2
Perry, R.3
Dorsey, J.A.4
Johnson, F.B.5
Shilatifard, A.6
Kaeberlein, M.7
Kennedy, B.K.8
Berger, S.L.9
-
11
-
-
0029805633
-
The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast
-
DOI 10.1038/384589a0
-
De Rubertis F, Kadosh D, Henchoz S, Pauli D, Reuter G, Struhl K, Spierer P (1996) The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast. Nature 384: 589-591 (Pubitemid 26415940)
-
(1996)
Nature
, vol.384
, Issue.6609
, pp. 589-591
-
-
De Rubertis, F.1
Kadosht, D.2
Henchoz, S.3
Pauli, D.4
Reuter, G.5
Struhl, K.6
Spierer, P.7
-
12
-
-
34047231261
-
High-resolution mapping reveals links of HP1 with active and inactive chromatin components
-
De Wit E, Greil F, van Steensel B (2007) High-resolution mapping reveals links of HP1 with active and inactive chromatin components. PLoS Genet 3: e38
-
(2007)
PLoS Genet
, vol.3
-
-
De Wit, E.1
Greil, F.2
Van Steensel, B.3
-
13
-
-
69849111326
-
DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chro-matin structure at a tRNA insulator
-
Dhillon N, Raab J, Guzzo J, Szyjka SJ, Gangadharan S, Aparicio OM, Andrews B, Kamakaka RT (2009) DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chro-matin structure at a tRNA insulator. EMBO J 28: 2583-2600
-
(2009)
EMBO J
, vol.28
, pp. 2583-2600
-
-
Dhillon, N.1
Raab, J.2
Guzzo, J.3
Szyjka, S.J.4
Gangadharan, S.5
Aparicio, O.M.6
Andrews, B.7
Kamakaka, R.T.8
-
14
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
DOI 10.1126/science.1134053
-
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ (2007) Dynamics of replication-independent histone turnover in budding yeast. Science 315: 1405-1408 (Pubitemid 46399548)
-
(2007)
Science
, vol.315
, Issue.5817
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Friedman, N.5
Rando, O.J.6
-
15
-
-
0033558878
-
The boundaries of the silenced HMR domain in Saccharomyces cerevisiae
-
Donze D, Adams CR, Rine J, Kamakaka RT (1999) The boundaries of the silenced HMR domain in Saccharomyces cerevisiae. Genes Dev 13: 698-708 (Pubitemid 29155976)
-
(1999)
Genes and Development
, vol.13
, Issue.6
, pp. 698-708
-
-
Donze, D.1
Adams, C.R.2
Rine, J.3
Kamakaka, R.T.4
-
16
-
-
77950384576
-
Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate
-
Ehrentraut S, Weber JM, Dybowski JN, Hoffmann D, EhrenhoferMurray AE (2010) Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate. Proc Natl Acad Sci USA 107: 5522-5527
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5522-5527
-
-
Ehrentraut, S.1
Weber, J.M.2
Dybowski, J.N.3
Hoffmann, D.4
Ehrenhofermurray, A.E.5
-
17
-
-
0033522443
-
Cohabitation of insulators and silencing elements in yeast subtelomeric regions
-
DOI 10.1093/emboj/18.9.2522
-
Fourel G, Revardel E, Koering CE, Gilson E (1999) Cohabitation of insulators and silencing elements in yeast subtelomeric regions. EMBO J 18: 2522-2537 (Pubitemid 29213284)
-
(1999)
EMBO Journal
, vol.18
, Issue.9
, pp. 2522-2537
-
-
Fourel, G.1
Revardel, E.2
Koering, C.E.3
Gilson, E.4
-
18
-
-
0031620133
-
Nuclear organization and silencing: Trafficking of Sir proteins
-
discussion 126-132
-
Gasser SM, Gotta M, Renauld H, Laroche T, Cockell M (1998a) Nuclear organization and silencing: trafficking of Sir proteins. Novartis Found Symp 214: 114-126; discussion 126-132
-
(1998)
Novartis Found Symp
, vol.214
, pp. 114-126
-
-
Gasser, S.M.1
Gotta, M.2
Renauld, H.3
Laroche, T.4
Cockell, M.5
-
20
-
-
0029817763
-
Spreading of transcriptional repressor SIR3 from telomeric heterochromatin
-
DOI 10.1038/383092a0
-
Hecht A, Strahl-Bolsinger S, Grunstein M (1996) Spreading of transcriptional repressor SIR3 from telomeric heterochromatin. Nature 383: 92-96 (Pubitemid 26296468)
-
(1996)
Nature
, vol.383
, Issue.6595
, pp. 92-96
-
-
Hecht, A.1
Strahl-Bolsinger, S.2
Grunstein, M.3
-
21
-
-
0036261650
-
Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation
-
DOI 10.1128/MCB.22.12.4167-4180.2002
-
Hoppe GJ, Tanny JC, Rudner AD, Gerber SA, Danaie S, Gygi SP, Moazed D (2002) Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation. Mol Cell Biol 22: 4167-4180 (Pubitemid 34556587)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.12
, pp. 4167-4180
-
-
Hoppe, G.J.1
Tanny, J.C.2
Rudner, A.D.3
Gerber, S.A.4
Danaie, S.5
Gygi, S.P.6
Moazed, D.7
-
22
-
-
37349082452
-
POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation
-
Johansson AM, Stenberg P, Pettersson F, Larsson J (2007) POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation. PLoS Genet 3: e209
-
(2007)
PLoS Genet
, vol.3
-
-
Johansson, A.M.1
Stenberg, P.2
Pettersson, F.3
Larsson, J.4
-
23
-
-
70349170114
-
Reconstitution of heterochromatin-dependent transcrip-tional gene silencing
-
Johnson A, Li G, Sikorski TW, Buratowski S, Woodcock CL, Moazed D (2009) Reconstitution of heterochromatin-dependent transcrip-tional gene silencing. Mol Cell 35: 769-781
-
(2009)
Mol Cell
, vol.35
, pp. 769-781
-
-
Johnson, A.1
Li, G.2
Sikorski, T.W.3
Buratowski, S.4
Woodcock, C.L.5
Moazed, D.6
-
24
-
-
0343924289
-
Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters
-
Kadosh D, Struhl K (1997) Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell 89: 365-371
-
(1997)
Cell
, vol.89
, pp. 365-371
-
-
Kadosh, D.1
Struhl, K.2
-
25
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukar-yotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, Leproust EM, Hughes TR, Lieb JD, Widom J, Segal E (2008) The DNA-encoded nucleosome organization of a eukar-yotic genome. Nature 458: 362-366
-
(2008)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
Leproust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
Segal, E.11
-
26
-
-
21844454183
-
Heterochromatin formation involves changes in histone modifications over multiple cell generations
-
DOI 10.1038/sj.emboj.7600692
-
Katan-Khaykovich Y, Struhl K (2005) Heterochromatin formation involves changes in histone modifications over multiple cell generations. EMBO J 24: 2138-2149 (Pubitemid 40961798)
-
(2005)
EMBO Journal
, vol.24
, Issue.12
, pp. 2138-2149
-
-
Katan-Khaykovich, Y.1
Struhl, K.2
-
27
-
-
0030916153
-
Redistribution of silencing proteins from telomeres to the nucleolus is associated with extension of life span in S. cerevisiae
-
DOI 10.1016/S0092-8674(00)80219-6
-
Kennedy BK, Gotta M, Sinclair DA, Mills K, McNabb DS, Murthy M, Pak SM, Laroche T, Gasser SM, Guarente L (1997) Redistribution of silencing proteins from telomeres to the nucleolus is associated with extension of life span in S. cerevisiae. Cell 89: 381-391 (Pubitemid 27220883)
-
(1997)
Cell
, vol.89
, Issue.3
, pp. 381-391
-
-
Kennedy, B.K.1
Gotta, M.2
Sinclair, D.A.3
Mills, K.4
McNabb, D.S.5
Murthy, M.6
Pak, S.M.7
Laroche, T.8
Gasser, S.M.9
Guarente, L.10
-
28
-
-
75649086193
-
Inactivation of the Sas2 histone acetyltransferase delays senescence driven by telomere dysfunction
-
Kozak ML, Chavez A, Dang W, Berger SL, Ashok A, Guo X, Johnson FB (2010) Inactivation of the Sas2 histone acetyltransferase delays senescence driven by telomere dysfunction. EMBO J 29: 158-170
-
(2010)
EMBO J
, vol.29
, pp. 158-170
-
-
Kozak, M.L.1
Chavez, A.2
Dang, W.3
Berger, S.L.4
Ashok, A.5
Guo, X.6
Johnson, F.B.7
-
29
-
-
34247279134
-
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster
-
DOI 10.1101/gad.1506607
-
Kundu S, Horn PJ, Peterson CL (2007) SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev 21: 997-1004 (Pubitemid 46625647)
-
(2007)
Genes and Development
, vol.21
, Issue.8
, pp. 997-1004
-
-
Kundu, S.1
Horn, P.J.2
Peterson, C.L.3
-
30
-
-
0033940731
-
The dynamics of yeast telomeres and silencing proteins through the cell cycle
-
DOI 10.1006/jsbi.2000.4240
-
Laroche T, Martin SG, Tsai-Pflugfelder M, Gasser SM (2000) The dynamics of yeast telomeres and silencing proteins through the cell cycle. J Struct Biol 129: 159-174 (Pubitemid 30481357)
-
(2000)
Journal of Structural Biology
, vol.129
, Issue.2-3
, pp. 159-174
-
-
Laroche, T.1
Martin, S.G.2
Tsai-Pflugfelder, M.3
Gasser, S.M.4
-
31
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
DOI 10.1038/ng569
-
Lieb JD, Liu X, Botstein D, Brown PO (2001) Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet 28: 327-334 (Pubitemid 32702421)
-
(2001)
Nature Genetics
, vol.28
, Issue.4
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
32
-
-
19344377042
-
Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation
-
DOI 10.1016/j.cell.2005.03.035, PII S0092867405003545
-
Liou GG, Tanny JC, Kruger RG, Walz T, Moazed D (2005) Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation. Cell 121: 515-527 (Pubitemid 40720006)
-
(2005)
Cell
, vol.121
, Issue.4
, pp. 515-527
-
-
Liou, G.-G.1
Tanny, J.C.2
Kruger, R.G.3
Walz, T.4
Moazed, D.5
-
33
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol 3: e328
-
(2005)
PLoS Biol
, vol.3
-
-
Liu, C.L.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Schreiber, S.L.5
Friedman, N.6
Rando, O.J.7
-
34
-
-
0037812450
-
Development and validation of a T7 based linear amplification for genomic DNA
-
Liu CL, Schreiber SL, Bernstein BE (2003) Development and validation of a T7 based linear amplification for genomic DNA. BMC Genomics 4: 19
-
(2003)
BMC Genomics
, vol.4
, pp. 19
-
-
Liu, C.L.1
Schreiber, S.L.2
Bernstein, B.E.3
-
35
-
-
0029417194
-
The chromosome ends of Saccharomyces cerevi-siae
-
Louis EJ (1995) The chromosome ends of Saccharomyces cerevi-siae. Yeast 11 : 1553-1573
-
(1995)
Yeast
, vol.11
, pp. 1553-1573
-
-
Louis, E.J.1
-
36
-
-
71449124365
-
Functional analyses of PAU genes in Saccharomyces cerevisiae
-
Luo Z, van Vuuren HJ (2009) Functional analyses of PAU genes in Saccharomyces cerevisiae. Microbiology 155: 4036-4049
-
(2009)
Microbiology
, vol.155
, pp. 4036-4049
-
-
Luo, Z.1
Van Vuuren, H.J.2
-
37
-
-
58149457091
-
A silencer promotes the assembly of silenced chromatin independently of recruitment
-
Lynch PJ, Rusche LN (2009) A silencer promotes the assembly of silenced chromatin independently of recruitment. Mol Cell Biol 29: 43-56
-
(2009)
Mol Cell Biol
, vol.29
, pp. 43-56
-
-
Lynch, P.J.1
Rusche, L.N.2
-
38
-
-
0024278925
-
Yeast gene SRP1 (serine-rich protein). Intragenic repeat structure and identification of a family of SRP1-related DNA sequences
-
Marguet D, Guo XJ, Lauquin GJ (1988) Yeast gene SRP1 (serine-rich protein). Intragenic repeat structure and identification of a family of SRP1-related DNA sequences. J Mol Biol 202: 455-470
-
(1988)
J Mol Biol
, vol.202
, pp. 455-470
-
-
Marguet, D.1
Guo, X.J.2
Lauquin, G.J.3
-
39
-
-
59649090017
-
Reconstitution of yeast silent chromatin: Multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro
-
Martino F, Kueng S, Robinson P, Tsai-Pflugfelder M, van Leeuwen F, Ziegler M, Cubizolles F, Cockell MM, Rhodes D, Gasser SM (2009) Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro. Mol Cell 33: 323-334
-
(2009)
Mol Cell
, vol.33
, pp. 323-334
-
-
Martino, F.1
Kueng, S.2
Robinson, P.3
Tsai-Pflugfelder, M.4
Van Leeuwen, F.5
Ziegler, M.6
Cubizolles, F.7
Cockell, M.M.8
Rhodes, D.9
Gasser, S.M.10
-
40
-
-
2942733647
-
A model for step-wise assembly of heterochromatin in yeast
-
discussion 56-62, 163-169
-
Moazed D, Rudner AD, Huang J, Hoppe GJ, Tanny JC (2004) A model for step-wise assembly of heterochromatin in yeast. Novartis Found Symp 259: 48-56; discussion 56-62, 163-169
-
(2004)
Novartis Found Symp
, vol.259
, pp. 48-56
-
-
Moazed, D.1
Rudner, A.D.2
Huang, J.3
Hoppe, G.J.4
Tanny, J.C.5
-
41
-
-
75149171523
-
Silent information regulator 3: The Goldilocks of the silencing complex
-
Norris A, Boeke JD (2010) Silent information regulator 3: the Goldilocks of the silencing complex. Genes Dev 24: 115-122
-
(2010)
Genes Dev
, vol.24
, pp. 115-122
-
-
Norris, A.1
Boeke, J.D.2
-
42
-
-
0031264897
-
Saccharomyces cerevisiae telomeres. A review
-
Pryde FE, Louis EJ (1997) Saccharomyces cerevisiae telomeres. A review. Biochemistry (Mosc) 62: 1232-1241 (Pubitemid 127665912)
-
(1997)
Biochemistry (Moscow)
, vol.62
, Issue.11
, pp. 1232-1241
-
-
Pryde, F.E.1
Louis, E.J.2
-
43
-
-
0033522444
-
Limitations of silencing at native yeast telomeres
-
DOI 10.1093/emboj/18.9.2538
-
Pryde FE, Louis EJ (1999) Limitations of silencing at native yeast telomeres. EMBO J 18: 2538-2550 (Pubitemid 29213285)
-
(1999)
EMBO Journal
, vol.18
, Issue.9
, pp. 2538-2550
-
-
Pryde, F.E.1
Louis, E.J.2
-
44
-
-
0027184524
-
Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage
-
Renauld H, Aparicio OM, Zierath PD, Billington BL, Chhablani SK, Gottschling DE (1993) Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage. Genes Dev 7: 1133-1145 (Pubitemid 23207406)
-
(1993)
Genes and Development
, vol.7
, Issue.7 A
, pp. 1133-1145
-
-
Renauld, H.1
Aparicio, O.M.2
Zierath, P.D.3
Billington, B.L.4
Chhablani, S.K.5
Gottschling, D.E.6
-
45
-
-
0036324497
-
Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae
-
DOI 10.1091/mbc.E02-03-0175
-
Rusche LN, Kirchmaier AL, Rine J (2002) Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae. Mol Biol Cell 13: 2207-2222 (Pubitemid 34831327)
-
(2002)
Molecular Biology of the Cell
, vol.13
, Issue.7
, pp. 2207-2222
-
-
Rusche, L.N.1
Kirchmaier, A.L.2
Rine, J.3
-
46
-
-
0037636027
-
The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae
-
DOI 10.1146/annurev.biochem.72.121801.161547
-
Rusche LN, Kirchmaier AL, Rine J (2003) The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae. Annu Rev Biochem 72: 481-516 (Pubitemid 36930453)
-
(2003)
Annual Review of Biochemistry
, vol.72
, pp. 481-516
-
-
Rusche, L.N.1
Kirchmaier, A.L.2
Rine, J.3
-
47
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukar-yotic genome in response to transcriptional perturbation
-
Shivaswamy S, Bhinge A, Zhao Y, Jones S, Hirst M, Iyer VR (2008) Dynamic remodeling of individual nucleosomes across a eukar-yotic genome in response to transcriptional perturbation. PLoS Biol 6: e65
-
(2008)
PLoS Biol
, vol.6
-
-
Shivaswamy, S.1
Bhinge, A.2
Zhao, Y.3
Jones, S.4
Hirst, M.5
Iyer, V.R.6
-
48
-
-
32444434989
-
Histone H4-K16 acetylation controls chromatin structure and protein interactions
-
DOI 10.1126/science.1124000
-
Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, Peterson CL (2006) Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311: 844-847 (Pubitemid 43228847)
-
(2006)
Science
, vol.311
, Issue.5762
, pp. 844-847
-
-
Shogren-Knaak, M.1
Ishii, H.2
Sun, J.-M.3
Pazin, M.J.4
Davie, J.R.5
Peterson, C.L.6
-
49
-
-
0030820491
-
Accelerated aging and nucleolar fragmentation in yeast SGS1 mutants
-
DOI 10.1126/science.277.5330.1313
-
Sinclair DA, Mills K, Guarente L (1997) Accelerated aging and nucleolar fragmentation in yeast sgs1 mutants. Science 277: 1313-1316 (Pubitemid 27449085)
-
(1997)
Science
, vol.277
, Issue.5330
, pp. 1313-1316
-
-
Sinclair, D.A.1
Mills, K.2
Guarente, L.3
-
50
-
-
69449084972
-
Histone H3 N-terminus regulates higher order structure of yeast heterochromatin
-
Sperling AS, Grunstein M (2009) Histone H3 N-terminus regulates higher order structure of yeast heterochromatin. Proc Natl Acad Sci USA 106: 13153-13159
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13153-13159
-
-
Sperling, A.S.1
Grunstein, M.2
-
51
-
-
0029807521
-
Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing
-
DOI 10.1083/jcb.135.3.571
-
Stone EM, Pillus L (1996) Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcrip-tional silencing. J Cell Biol 135: 571-583 (Pubitemid 26372916)
-
(1996)
Journal of Cell Biology
, vol.135
, Issue.3
, pp. 571-583
-
-
Stone, E.M.1
Pillus, L.2
-
52
-
-
0034046081
-
Two classes of sir3 mutants enhance the sir1 mutant mating defect and abolish telomeric silencing in Saccharomyces cerevisiae
-
Stone EM, Reifsnyder C, McVey M, Gazo B, Pillus L (2000) Two classes of sir3 mutants enhance the sir1 mutant mating defect and abolish telomeric silencing in Saccharomyces cerevisiae. Genetics 155: 509-522 (Pubitemid 30397106)
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 509-522
-
-
Stone, E.M.1
Reifsnyder, C.2
McVey, M.3
Gazo, B.4
Pillus, L.5
-
53
-
-
0033574603
-
Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity
-
Straight AF, Shou W, Dowd GJ, Turck CW, Deshaies RJ, Johnson AD, Moazed D (1999) Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity. Cell 97: 245-256 (Pubitemid 29194275)
-
(1999)
Cell
, vol.97
, Issue.2
, pp. 245-256
-
-
Straight, A.F.1
Shou, W.2
Dowd, G.J.3
Turck, C.W.4
Deshaies, R.J.5
Johnson, A.D.6
Moazed, D.7
-
54
-
-
63849287611
-
The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion
-
Taddei A, Van Houwe G, Nagai S, Erb I, van Nimwegen E, Gasser SM (2009) The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion. Genome Res 19: 611-625
-
(2009)
Genome Res
, vol.19
, pp. 611-625
-
-
Taddei, A.1
Van Houwe, G.2
Nagai, S.3
Erb, I.4
Van Nimwegen, E.5
Gasser, S.M.6
-
55
-
-
69249087790
-
Impact of chromatin structures on DNA processing for genomic analyses
-
Teytelman L, Ozaydin B, Zill O, Lefrancois P, Snyder M, Rine J, Eisen MB (2009) Impact of chromatin structures on DNA processing for genomic analyses. PLoS One 4: e6700
-
(2009)
PLoS One
, vol.4
-
-
Teytelman, L.1
Ozaydin, B.2
Zill, O.3
Lefrancois, P.4
Snyder, M.5
Rine, J.6
Eisen, M.B.7
-
56
-
-
33846059708
-
Communication between levels of transcrip-tional control improves robustness and adaptivity
-
Tsankov AM, Brown CR, Yu MC, Win MZ, Silver PA, Casolari JM (2006) Communication between levels of transcrip-tional control improves robustness and adaptivity. Mol Syst Biol 2: 65
-
(2006)
Mol Syst Biol
, vol.2
, pp. 65
-
-
Tsankov, A.M.1
Brown, C.R.2
Yu, M.C.3
Win, M.Z.4
Silver, P.A.5
Casolari, J.M.6
-
57
-
-
23044431656
-
Histone H3 lysine 9 methylation and HP1 are associated with transcription elongation through mammalian chromatin
-
DOI 10.1016/j.molcel.2005.06.011, PII S1097276505013900
-
Vakoc CR, Mandat SA, Olenchock BA, Blobel GA (2005) Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol Cell 19: 381-391 (Pubitemid 41074893)
-
(2005)
Molecular Cell
, vol.19
, Issue.3
, pp. 381-391
-
-
Vakoc, C.R.1
Mandat, S.A.2
Olenchock, B.A.3
Blobel, G.A.4
-
58
-
-
40349091379
-
Long-range communication between the silencers of HMR
-
DOI 10.1128/MCB.01647-07
-
Valenzuela L, Dhillon N, Dubey RN, Gartenberg MR, Kamakaka RT (2008) Long-range communication between the silencers of HMR. Mol Cell Biol 28: 1924-1935 (Pubitemid 351342624)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.6
, pp. 1924-1935
-
-
Valenzuela, L.1
Dhillon, N.2
Dubey, R.N.3
Gartenberg, M.R.4
Kamakaka, R.T.5
-
59
-
-
70350148258
-
Transcription independent insulation at TFIIIC-dependent insulators
-
Valenzuela L, Dhillon N, Kamakaka RT (2009) Transcription independent insulation at TFIIIC-dependent insulators. Genetics 183: 131-148
-
(2009)
Genetics
, vol.183
, pp. 131-148
-
-
Valenzuela, L.1
Dhillon, N.2
Kamakaka, R.T.3
-
60
-
-
0037077178
-
Dot1p modulates silencing in yeast by methylation of the nucleosome core
-
DOI 10.1016/S0092-8674(02)00759-6
-
van Leeuwen F, Gafken PR, Gottschling DE (2002) Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell 109: 745-756 (Pubitemid 34727348)
-
(2002)
Cell
, vol.109
, Issue.6
, pp. 745-756
-
-
Van Leeuwen, F.1
Gafken, P.R.2
Gottschling, D.E.3
-
61
-
-
36749009061
-
Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z
-
DOI 10.1073/pnas.0700914104
-
Venkatasubrahmanyam S, Hwang WW, Meneghini MD, Tong AH, Madhani HD (2007) Genome-wide, as opposed to local, antisilen-cing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. Proc Natl Acad Sci USA 104: 16609-16614 (Pubitemid 350211064)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.42
, pp. 16609-16614
-
-
Venkatasubrahmanyam, S.1
Hwang, W.W.2
Meneghini, M.D.3
Tong, A.H.Y.4
Madhani, H.D.5
-
62
-
-
74949110964
-
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
-
Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N (2010) High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 20: 90-100
-
(2010)
Genome Res
, vol.20
, pp. 90-100
-
-
Weiner, A.1
Hughes, A.2
Yassour, M.3
Rando, O.J.4
Friedman, N.5
-
63
-
-
0037108787
-
The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast
-
DOI 10.1073/pnas.202495299
-
Williams RM, Primig M, Washburn BK, Winzeler EA, Bellis M, Sarrauste de Menthiere C, Davis RW, Esposito RE (2002) The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast. Proc Natl Acad Sci USA 99: 13431-13436 (Pubitemid 35215398)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.21
, pp. 13431-13436
-
-
Williams, R.M.1
Primig, M.2
Washburn, B.K.3
Winzeler, E.A.4
Bellis, M.5
De Menthiere, C.S.6
Davis, R.W.7
Esposito, R.E.8
-
64
-
-
33745967090
-
Single-cell observations reveal intermediate transcriptional silencing states
-
DOI 10.1016/j.molcel.2006.05.035, PII S1097276506003777
-
Xu EY, Zawadzki KA, Broach JR (2006) Single-cell observations reveal intermediate transcriptional silencing states. Mol Cell 23: 219-229 (Pubitemid 44062370)
-
(2006)
Molecular Cell
, vol.23
, Issue.2
, pp. 219-229
-
-
Xu, E.Y.1
Zawadzki, K.A.2
Broach, J.R.3
-
65
-
-
34748909429
-
Sir2 deacety-lates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast
-
DOI 10.1016/j.molcel.2007.07.021, PII S1097276507004947
-
Xu F, Zhang Q, Zhang K, Xie W, Grunstein M (2007) Sir2 deacety-lates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast. Mol Cell 27: 890-900 (Pubitemid 47488183)
-
(2007)
Molecular Cell
, vol.27
, Issue.6
, pp. 890-900
-
-
Xu, F.1
Zhang, Q.2
Zhang, K.3
Xie, W.4
Grunstein, M.5
-
66
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Munster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM (2009) Bidirectional promoters generate pervasive transcription in yeast. Nature 457: 1033-1037
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
67
-
-
22744432660
-
Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
-
DOI 10.1126/science.1112178
-
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630 (Pubitemid 41033649)
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 626-630
-
-
Yuan, G.-C.1
Liu, Y.-J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
68
-
-
67649882797
-
Histone deacety-lase Rpd3 antagonizes Sir2-dependent silent chromatin propagation
-
Zhou J, Zhou BO, Lenzmeier BA, Zhou JQ (2009) Histone deacety-lase Rpd3 antagonizes Sir2-dependent silent chromatin propagation. Nucleic Acids Res 37: 3699-3713
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3699-3713
-
-
Zhou, J.1
Zhou, B.O.2
Lenzmeier, B.A.3
Zhou, J.Q.4
-
69
-
-
78649980458
-
Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly
-
Zill OA, Scannell D, Teytelman L, Rine J (2010) Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. PLoS Biol 8: e1000550
-
(2010)
PLoS Biol
, vol.8
-
-
Zill, O.A.1
Scannell, D.2
Teytelman, L.3
Rine, J.4
|