Bioreactor technology in marine microbiology: From design to future application

Biotechnology Advances

Volumn 29, Issue 3, 2011, Pages 312-321

  Zhang, Yu ^a   Arends, Jan B A ^a   Van de Wiele, Tom ^a   Boon, Nico ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

Bio electrochemical system; Eutrophication; High pressure bioreactor; Marine resources; Sustainable green technology

Indexed keywords

BIO ELECTROCHEMICAL SYSTEMS; BIOPROCESSES; CHEMICAL PRODUCTS; CLEAN ENERGY GENERATION; COASTAL AREA; CRITICAL PARAMETER; CURRENT STATUS; ENERGY GENERATIONS; FOOD PRODUCTION; FUTURE APPLICATIONS; HIGH-PRESSURE BIOREACTOR; MARINE ECOSYSTEM; MARINE MICROORGANISM; MARINE RESOURCES; NATURAL ENVIRONMENTS; NOVEL DESIGN; REACTOR DESIGNS; SUSTAINABLE GREEN TECHNOLOGY; SUSTAINABLE PRACTICES;

ATMOSPHERIC CHEMISTRY; BIOCONVERSION; BIOREACTORS; COASTAL ZONES; CULTIVATION; DESIGN; ECOSYSTEMS; ELECTROCHEMISTRY; ENERGY CONVERSION; EUTROPHICATION; INDUSTRIAL WASTE TREATMENT; INNOVATION; MARINE BIOLOGY; MICROORGANISMS; OCEANOGRAPHY; RADIOACTIVE WASTE DISPOSAL; SUSTAINABLE DEVELOPMENT;

TECHNOLOGY;

SEA WATER;

BIOREACTOR; BIOTECHNOLOGY; DEEP SEA; ELECTROCHEMICAL METHOD; FOOD PRODUCTION; MARINE ECOSYSTEM; MARINE POLLUTION; MARINE RESOURCE; MARINE TECHNOLOGY; MICROBIAL ACTIVITY; WASTE TREATMENT;

BIOREACTOR; MICROBIOLOGY; REVIEW;

BIOREACTORS; SEAWATER; WATER MICROBIOLOGY;

EID: 79952701038     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2011.01.004     Document Type: Review

References (108)

1. Aelterman P., Freguia S., Keller J., Verstraete W., Rabaey K. The anode potential regulates bacterial activity in microbial fuel cells. Appl Microbiol Biotechnol 2008, 78:409-418.
2. Aertsen A., Meersman F., Hendrickx M.E.G., Vogel R.F., Michiels C.W. Biotechnology under high pressure: applications and implications. Trends Biotechnol 2009, 27:434-441.
3. Alain K., Querellou J. Cultivating the uncultured: limits, advances and future challenges. Extremophiles 2009, 13:583-594.
4. Amend J.P., Shock E.L. Energetics of overall metabolic reactions of thermophilic and hyperthermophilic archaea and bacteria. FEMS Microbiol Rev 2001, 25:175-243.
5. Bond D.R., Holmes D.E., Tender L.M., Lovley D.R. Electrode-reducing microorganisms that harvest energy from marine sediments. Science 2002, 295:483-485.
6. Cao L., Wang W., Yang Y., Yang C., Yuan Z., Xiong S., et al. Environmental impact of aquaculture and countermeasures to aquaculture pollution in China. Environ Sci Pollut Res 2007, 14:452-462.
7. Cheng S.A., Xing D.F., Call D.F., Logan B.E. Direct biological conversion of electrical current into methane by electromethanogenesis. Environ Sci Technol 2009, 43:3953-3958.
8. Clauwaert P., Verstraete W. Methanogenesis in membraneless microbial electrolysis cells. Appl Microbiol Biotechnol 2009, 82:829-836.
9. Clauwaert P., Rabaey K., Aelterman P., De Schamphelaire L., Ham T.H., Boeckx P., et al. Biological denitrification in microbial fuel cells. Environ Sci Technol 2007, 41:3354-3360.
10. Clauwaert P., Van der Ha D., Boon N., Verbeken K., Verhaege M., Rabaey K., et al. Open air biocathode enables effective electricity generation with microbial fuel cells. Environ Sci Technol 2007, 41:7564-7569.
11. Clauwaert P., Aelterman P., Pham T.H., De Schamphelaire L., Carballa M., Rabaey K., et al. Minimizing losses in bio-electrochemical systems: the road to applications. Appl Microbiol Biotechnol 2008, 79:901-913.
12. Connon S.A., Giovannoni S.J. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl Environ Microbiol 2002, 68:3878-3885.
13. Cournet A., Délia M.-L., Bergel A., Roques C., Bergé M. Electrochemical reduction of oxygen catalyzed by a wide range of bacteria including Gram-positive. Electrochem Commun 2010, 12:505-508.
14. Crab R., Avnimelech Y., Defoirdt T., Bossier P., Verstraete W. Nitrogen removal techniques in aquaculture for a sustainable production. Aquaculture 2007, 270:1-14.
15. 2 microelectrode for profiling sediments, microbial mats, and biofilms. Limnol Oceanogr 1997, 42:1590-1600.
16. Debashish G., Malay S., Barindra S., Joydeep M. Marine enzymes marine biotechnology I 2005, 189-218. Springer-Verlag Berlin, Berlin.
17. DeLong E.F. Marine microbial diversity: the tip of the iceberg. Trends Biotechnol 1997, 15:203-207.
18. Deusner C., Meyer V., Ferdelman T.G. High-pressure systems for gas-phase free continuous incubation of enriched marine microbial communities performing anaerobic oxidation of methane. Biotechnol Bioeng 2009, 105:524-533.
19. Donovan C., Dewan A., Heo D., Beyenal H. Batteryless, wireless sensor powered by a sediment microbial fuel cell. Environ Sci Technol 2008, 42:8591-8596.
20. Duan Z.H., Mao S.D. A thermodynamic model for calculating methane solubility, density and gas phase composition of methane-bearing aqueous fluids from 273 to 523K and from 1 to 2000bar. Geochim Cosmochim Acta 2006, 70:3369-3386.
21. 2 solubility in pure water and aqueous NaCl solutions from 273 to 533K and from 0 to 2000bar. Chem Geol 2003, 193:257-271.
22. Dumas C., Mollica A., Feron D., Basseguy R., Etcheverry L., Bergel A. Marine microbial fuel cell: use of stainless steel electrodes as anode and cathode materials. Electrochim Acta 2007, 53:468-473.
23. Egli T. Microbial growth with mixtures of carbon substrates: what are its implications for the degradation of organic pollutants in particular and for microbial ecology in general? 2004, A a Balkema Publishers, Leiden.
24. FAO. FAO yearbook of fishery statistics summary tables.
25. Freguia S., Rabaey K., Yuan Z.G., Keller J. Syntrophic processes drive the conversion of glucose in microbial fuel cell anodes. Environ Sci Technol 2008, 42:7937-7943.
26. Girguis P.R., Orphan V.J., Hallam S.J., DeLong E.F. Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor. Applied and Environmental Microbiology 2003, 69:5472-5482.
27. Grossart H.P., Gust G. Hydrostatic pressure affects physiology and community structure of marine bacteria during settling to 4000m: an experimental approach. Mar Ecol Prog Ser 2009, 390:97-104.
28. He Z., Angenent L.T. Application of bacterial biocathodes in microbial fuel cells. Electroanalysis 2006, 18:2009-2015.
29. Hinrichsen D. Coastal waters of the world: trends, threats, and strategies 1998, Washinton D.C. Island Press.
30. Hong S.W., Kim H.S., Chung T.H. Alteration of sediment organic matter in sediment microbial fuel cells. Environ Pollut 2010, 158:185-191.
31. Houghton J.L., Seyfried W.E., Banta A.B., Reysenbach A.L. Continuous enrichment culturing of thermophiles under sulfate and nitrate-reducing conditions and at deep-sea hydrostatic pressures. Extremophiles 2007, 11:371-382.
32. Imai E., Honda H., Hatori K., Brack A., Matsuno K. Elongation of oligopeptides in a simulated submarine hydrothermal system. Science 1999, 283:831-833.
33. Jannasch H.W., Wirsen C.O., Doherty K.W. A pressurized chemostat for the study of marine barophilic and oligotrophic bacteria. Appl Environ Microbiol 1996, 62:1593-1596.
34. Jones P.T., De Meyere V. Terra reversa. Uitgeverij ASP 2009, Academic & Scientific Publishers, Brussels.
35. Jorgensen B.B., Boetius A. Feast and famine - microbial life in the deep-sea bed. Nat Rev Microbiol 2007, 5:770-781.
36. Kallmeyer J., Ferdelman T.G., Jansen K.H., Jorgensen B.B. A high-pressure thermal gradient block for investigating microbial activity in multiple deep-sea samples. J Microbiol Meth 2003, 55:165-172.
37. Kashefi K., Lovley D.R. Extending the upper temperature limit for life. Science 2003, 301:934.
38. Kashefi K., Holmes D.E., Reysenbach A.L., Lovley D.R. Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp nov. Appl Environ Microbiol 2002, 68:1735-1742.
39. Kielemoes J., De Boever P., Verstraete W. Influence of denitrification on the corrosion of iron and stainless steel powder. Environ Sci Technol 2000, 34:663-671.
40. Kielemoes J., Bultinck I., Verstraete W. Biocorrosie van austenitisch roestvast staal 2002, Kluwer Techniek, Mechelen.
41. Kogure K. Bioenergetics of marine bacteria. Curr Opin Biotechnol 1998, 9:278-282.
42. Konneke M., Bernhard A.E., de la Torre J.R., Walker C.B., Waterbury J.B., Stahl D.A. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 2005, 437:543-546.
43. Konopka A. Microbial physiological state at low growth rate in natural and engineered ecosystems. Current Opinion in Microbiology 2000, 3:244-247.
44. Landoulsi J., El Kirat K., Richard C., Feron D., Pulvin S. Enzymatic approach in microbial-influenced corrosion: a review based on stainless steels in natural waters. Environ Sci Technol 2008, 42:2233-2242.
45. Lang S., Huners M., Lurtz V. Bioprocess engineering data on the cultivation of marine prokaryotes and fungi marine biotechnology II 2005, 29-62. Springer-Verlag Berlin, Berlin.
46. Lauro F.M., Bartlett D.H. Prokaryotic lifestyles in deep sea habitats. Extremophiles 2008, 12:15-25.
47. Lauro F.M., McDougald D., Thomas T., Williams T.J., Egan S., Rice S., et al. The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci USA 2009, 106:15527-15533.
48. Law A.T., Button D.K. Multiple-carbon-source-limited growth kinetics of a marine coryneform bacterium. J Bacteriol 1977, 129:115-123.
49. Leary D., Vierros M., Hamon G., Arico S., Monagle C. Marine genetic resources: a review of scientific and commercial interest. Mar Policy 2009, 33:183-194.
50. Levin L.A., Ekau W., Gooday A.J., Jorissen F., Middelburg J.J., Naqvi S.W.A., et al. Effects of natural and human-induced hypoxia on coastal benthos. Biogeosciences 2009, 6:2063-2098.
51. Lezama-Cervantes C., Paniagua-Michel J. Effects of constructed microbial mats on water quality and performance of Litopenaeus vannamei post-larvae. Aquacult Eng 2010, 42:75-81.
52. Lichtschlag A., Felden J., Bruchert V., Boetius A., de Beer D. Geochemical processes and chemosynthetic primary production in different thiotrophic mats of the Hakon Mosby Mud Volcano (Barents Sea). Limnol Oceanogr 2010, 55:931-949.
53. Martin K., Paula H., Rodolfo B., Christoph K., Aid A., Gerhart B. Current advances in cost efficient polyhydroxyalkanoate production. Curr Top Biotechnol 2007, 3:1-13.
54. Marwick J.D., Wright P.C., Burgess J.G. Bioprocess intensification for production of novel marine bacterial antibiotics through bioreactor operation and design. Mar Biotechnol 1999, 1:495-507.
55. Meulepas R.J.W., Jagersma C.G., Gieteling J., Buisman C.J.N., Stams A.J.M., Lens P.N.L. Enrichment of anaerobic methanotrophs in sulfate-reducing membrane bioreactors. Biotechnol Bioeng 2009, 104:458-470.
56. Meunier C.F., Dandoy P., Su B.L. Encapsulation of cells within silica matrixes: towards a new advance in the conception of living hybrid materials. J Colloid Interface Sci 2010, 342:211-224.
57. Moreno-Garrido I. Microalgae immobilization: current techniques and uses. Bioresour Technol 2008, 99:3949-3964.
58. Morgan-Sagastume F., Karlsson A., Johansson P., Pratt S., Boon N., Lant P., et al. Production of polyhydroxyalkanoates in open, mixed cultures from a waste sludge stream containing high levels of soluble organics, nitrogen and phosphorus. Water Res 2010, 44:5196-5211.
59. Mu Y., Rabaey K., Rozendal R.A., Yuan Z.G., Keller J. Decolorization of azo dyes in bioelectrochemical systems. Environ Sci Technol 2009, 43:5137-5143.
60. Muffler K., Ulber R. Fed-batch cultivation of the marine bacterium Sulfitobacter pontiacus using immobilized substrate and purification of sulfite oxidase by application of membrane adsorber technology. Biotechnol Bioeng 2008, 99:870-875.
61. Mukhopadhyay B., Johnson E.F., Wolfe R.S. Reactor-scale cultivation of the hyperthermophilic methanarchaeon Methanococcus jannaschii to high cell densities. Applied and Environmental Microbiology 1999, 65:5059-5065.
62. Muyzer G., Stams A.J.M. The ecology and biotechnology of sulphate-reducing bacteria. Nat Rev Microbiol 2008, 6:441-454.
63. Nakajima J., Sakka M., Kimura T., Furukawa K., Sakka K. Enrichment of anammox bacteria from marine environment for the construction of a bioremediation reactor. Appl Microbiol Biotechnol 2008, 77:1159-1166.
64. Nauhaus K., Boetius A., Kruger M., Widdel F. In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment from a marine gas hydrate area. Environ Microbiol 2002, 4:296-305.
65. Nauhaus K., Albrecht M., Elvert M., Boetius A., Widdel F. In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation of methane with sulfate. Environ Microbiol 2007, 9:187-196.
66. Paerl H.W. Assessing and managing nutrient-enhanced eutrophication in estuarine and coastal waters: interactive effects of human and climatic perturbations. Ecol Eng 2006, 26:40-54.
67. Parkes R.J., Sellek G., Webster G., Martin D., Anders E., Weightman A.J., et al. Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG). Environ Microbiol 2009, 11:3140-3153.
68. Parr http://www.parrinst.com/default.cfm?Page_ID=357.
69. Pham T.H., Rabaey K., Aelterman P., Clauwaert P., De Schamphelaire L., Boon N., et al. Microbial fuel cells in relation to conventional anaerobic digestion technology. Eng Life Sci 2006, 6:285-292.
70. Pham H., Boon N., Marzorati M., Verstraete W. Enhanced removal of 1, 2-dichloroethane by anodophilic microbial consortia. Water Res 2009, 43:2936-2946.
71. Postec A., Lesongeur F., Pignet P., Ollivier B., Querellou J., Godfroy A. Continuous enrichment cultures: insights into prokaryotic diversity and metabolic interactions in deep-sea vent chimneys. Extremophiles 2007, 11:747-757.
72. Pradillon F., Shillito B., Chervin J.C., Hamel G., Gaill F. Pressure vessels for in vivo studies of deep-sea fauna. High Pressure Research 2004, 24:237-246.
73. Purcell J.E., Uye S., Lo W.T. Anthropogenic causes of jellyfish blooms and their direct consequences for humans: a review. Mar Ecol Prog Ser 2007, 350:153-174.
74. Rabalais N.N., Diaz R.J., Levin L.A., Turner R.E., Gilbert D., Zhang J. Dynamics and distribution of natural and human-caused hypoxia. Biogeosciences 2010, 7:585-619.
75. Rehm B.H.A. Biogenesis of microbial polyhydroxyalkanoate granules: a platform technology for the production of tailor-made bioparticles. Curr Issues Mol Biol 2007, 9:41-62.
76. Reimers C.E., Tender L.M., Fertig S., Wang W. Harvesting energy from the marine sediment-water interface. Environ Sci Technol 2001, 35:192-195.
77. Reysenbach A.L., Liu Y.T., Banta A.B., Beveridge T.J., Kirshtein J.D., Schouten S., et al. A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 2006, 442:444-447.
78. Rezaei F., Richard T.L., Brennan R.A., Logan B.E. Substrate-enhanced microbial fuel cells for improved remote power generation from sediment-based systems. Environ Sci Technol 2007, 41:4053-4058.
79. Rothschild L.J., Mancinelli R.L. Life in extreme environments. Nature 2001, 409:1092-1101.
80. Rozendal R.A., Jeremiasse A.W., Hamelers H.V.M., Buisman C.J.N. Hydrogen production with a microbial biocathode. Environ Sci Technol 2008, 42:629-634.
81. Sarkar S., Saha M., Roy D., Jaisankar P., Das S., Roy L.G., et al. Enhanced production of antimicrobial compounds by three salt-tolerant actinobacterial strains isolated from the Sundarbans in a niche-mimic bioreactor. Mar Biotechnol 2008, 10:518-526.
82. Schrenk M.O., Huber J.A., Edwards K.J. Microbial provinces in the subseafloor. Annu Rev Mar Sci 2010, 2:279-304.
83. Scott K., Cotlarciuc I., Hall D., Lakeman J.B., Browning D. Power from marine sediment fuel cells: the influence of anode material. J Appl Electrochem 2008, 38:1313-1319.
84. Scott K., Cotlarciuc I., Head I., Katuri K.P., Hall D., Lakeman J.B., et al. Fuel cell power generation from marine sediments: investigation of cathode materials. J Chem Technol Biotechnol 2008, 83:1244-1254.
85. Scotto V., Dicintio R., Marcenaro G. The influence of marine aerobic microbial film on stainless-steel corrosion behavior. Corros Sci 1985, 25:185-194.
86. Simonato F., Campanaro S., Lauro F.M., Vezzi A., D'Angelo M., Vitulo N., et al. Piezophilic adaptation: a genomic point of view. J Biotechnol 2006, 126:11-25.
87. Steinbusch K.J.J., Hamelers H.V.M., Schaap J.D., Kampman C., Buisman C.J.N. Bioelectrochemical ethanol production through mediated acetate reduction by mixed cultures. Environ Sci Technol 2010, 44:513-517.
88. Stingl U., Tripp H.J., Giovannoni S.J. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J 2007, 1:361-371.
89. Sudarno U., Bathe S., Winter J., Gallert C. Nitrification in fixed-bed reactors treating saline wastewater. Appl Microbiol Biotechnol 2010, 85:2017-2030.
90. Sudek S., Lopanik N.B., Waggoner L.E., Hildebrand M., Anderson C., Liu H.B., et al. Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina. J Nat Prod 2007, 70:67-74.
91. 4 production by a hyperthermophilic methanogen under high-pressure cultivation. Proc Natl Acad Sci USA 2008, 105:10949-10954.
92. Tender L.M., Reimers C.E., Stecher H.A., Holmes D.E., Bond D.R., Lowy D.A., et al. Harnessing microbially generated power on the seafloor. Nat Biotechnol 2002, 20:821-825.
93. Tender L.M., Gray S.A., Groveman E., Lowy D.A., Kauffman P., Melhado J., et al. The first demonstration of a microbial fuel cell as a viable power supply: powering a meteorological buoy. J Power Sources 2008, 179:571-575.
94. Thrash J.C., Coates J.D. Review: direct and indirect electrical stimulation of microbial metabolism. Environ Sci Technol 2008, 42:3921-3931.
95. Timmes T.C., Kim H.C., Dempsey B.A. Electrocoagulation pretreatment of seawater prior to ultrafiltration: pilot-scale applications for military water purification systems. Desalination 2010, 250:6-13.
96. van der Ha D., Hoefman S., Boeckx P., Verstraete W., Boon N. Copper enhances the activity and salt resistance of mixed methane-oxidizing communities. Appl Microbiol Biotechnol 2010, 87:2355-2363.
97. Vartoukian S.R., Palmer R.M., Wade W.G. Strategies for culture of 'unculturable' bacteria. FEMS Microbiol Lett 2010, 309:1-7.
98. Verstraete W., Morgan-Sagastume F., Aiyuk S., Waweru M., Rabaey K., Lissens G. Anaerobic digestion as a core technology in sustainable management of organic matter. Water Sci Technol 2005, 52:59-66.
99. Verstraete W., de Caveye P.V., Diamantis V. Maximum use of resources present in domestic "used water". Bioresour Technol 2009, 100:5537-5545.
100. 4 via direct and indirect extracellular electron transfer by a hydrogenophilic methanogenic culture. Bioresour Technol 2010, 101:3085-3090.
101. Whitman W.B., Coleman D.C., Wiebe W.J. Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 1998, 95:6578-6583.
102. Wieland A., de Beer D., Damgaard L.R., Kuhl M., van Dusschote D., Van As H. Fine-scale measurement of diffusivity in a microbial mat with nuclear magnetic resonance imaging. Limnol Oceanogr 2001, 46:248-259.
103. Williams K.H., Nevin K.P., Franks A., Englert A., Long P.E., Lovley D.R. Electrode-based approach for monitoring in situ microbial activity during subsurface bioremediation. Environ Sci Technol 2010, 44:47-54.
104. Wright P.C., Westacott R.E., Burja A.M. Piezotolerance as a metabolic engineering tool for the biosynthesis of natural products. Biomolecular Engineering 2003, 20:325-331.
105. Zeng X., Birrien J.L., Fouquet Y., Cherkashov G., Jebbar M., Querellou J., et al. Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life. ISME J 2009, 3:873-876.
106. Zhang T., Gannon S.M., Nevin K.P., Franks A.E., Lovley D.R. Stimulating the anaerobic degradation of aromatic hydrocarbons in contaminated sediments by providing an electrode as the electron acceptor. Environ Microbiol 2010, 12:1011-1020.
107. Zhang Y., Henriet J.-P., Bursens J., Boon N. Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor. Bioresour Technol 2010, 101:3132-3138.
108. Zuo Y., Xing D.F., Regan J.M., Logan B.E. Isolation of the exoelectrogenic bacterium Ochrobactrum anthropi YZ-1 by using a U-tube microbial fuel cell. Applied and Environmental Microbiology 2008, 74:3130-3137.