Proteomics analysis of mitochondrial extract from liver of female zebrafish undergoing starvation and refeeding

Aquaculture Nutrition

Volumn 17, Issue 2, 2011, Pages

  Enyu, Y L ^a   Shu Chien, A C ^a  

^a SCHOOL OF PHYSICS   (Malaysia)

Author keywords

Liver; Mitochondria; Starvation; Zebrafish

Indexed keywords

DANIO RERIO;

EID: 79952517036     PISSN: 13535773     EISSN: 13652095     Source Type: Journal    
DOI: 10.1111/j.1365-2095.2010.00776.x     Document Type: Article

References (47)

1. Arita, Y., Harkness, S.H., Kazzaz, J.A., Koo, H.-C., Joseph, A., Melendez, J.A., Davis, J.M., Chander, A. & Li, Y. (2006) Mitochondrial localization of catalase provides optimal protection from H2O2-induced cell death in lung epithelial cells. Am. J. Physiol. Lung Cell. Mol. Physiol., 290, 978-986.
2. Aviram, M. & Rosenblat, M. (2004) Paraoxonases 1, 2, and 3, oxidative stress, and macrophage foam cell formation during atherosclerosis development. Free Radic. Biol. Med., 37, 1304-1316.
3. Bauer, M., Hamm, A.C., Bonaus, M., Jacob, A., Jaekel, J., Schorle, H., Pankratz, M.J. & Katzenberger, J.D. (2004) Starvation response in mouse liver shows strong correlation with life-span-prolonging processes. Physiol. Genomics, 17, 230-244.
4. Coe, N. & Bernlohr, D. (1998) Physiological properties and functions of intracellular fatty acid-binding proteins. Biochim. Biophys. Acta, 1391, 287-306.
5. Corrales, F.J., Perez-Mato, I., Sanchez del Pino, M.M. et al. (2002) Regulation of mammalian liver methionine adenosyltransferase. J Nutr., 132, 2377S-2381S.
6. Drew, R.E., Rodnick, K.J., Settles, M., Wacyk, J., Churchill, E., Powell, M.S., Hardy, R.W., Murdoch, G.K., Hill, R.A. & Robison, B.D. (2008) Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio). Physiol. Genomics, 35, 283-295.
7. Enes, P., Panserat, S., Kaushik, S. & Oliva-Teles, A. (2009) Nutritional regulation of hepatic glucose metabolism in fish. Fish Physiol. Biochem., 35, 519-539.
8. Finn, P.F. & Dice, J.F. (2006) Proteolytic and lipolytic responses to starvation. Nutrition, 22, 830-844.
9. Forner, F., Foster, L.J., Campanaro, S., Valle, G. & Mann, M. (2006) Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver. Mol. Cell Proteomics, 5, 608-619.
10. Gerhard, G.S. & Cheng, K.C. (2002) A call to fins! Zebrafish as a gerontological model. Aging Cell, 1, 104-111.
11. Hanson, R. & Reshef, L. (1997) Regulation of phosphoenolpyruvate carboxykinase (GTP) gene expression. Annu. Rev. Biochem., 66, 581-611.
12. Hendershot, L.M., Ting, J. & Lee, A.S. (1988) Identity of the immunoglobin heavy-chain binding protein with the 78000-dalton glucose-regulated protein and the role of pos-translational modifications in its binding function. Mol. Cell. Biol., 8, 4250-4256.
13. Huang, D.W., Sherman, B.T. & Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
14. Hur, J.W., Woo, S.R., Jo, J.H. & Park, I.-S. (2006) Effects of starvation on kidney melano-macrophage centre in olive flounder, Paralichthys olivaceus (Temminck and Schlegel). Aquacult. Res., 37, 821-825.
15. Ide, T., Brown-Endres, L., Chu, K., Ongusaha, P.P., Ohtsuka, T., El-Deiry, W.S., Aaronson, S.A. & Lee, S.W. (2009) GAMT, a p53-inducible modulator of apoptosis, Is critical for the adaptive response to nutrient stress. Mol. Cell, 36, 379-392.
16. Ishizaki, K., Larson, T.R., Schauer, N., Fernie, A.R., Graham, I.A. & Leaver, C.J. (2005) The critical role of Arabidopsis electron transfer flavoprotein:ubiquinone oxidoreductase during dark-Induced starvation. Plant Cell, 17, 2587-2600.
17. Johnson, D.T., Harris, R.A., Blair, P.V. & Balaban, R.S. (2007) Functional consequences of mitochondrial proteome heterogeneity. Am. J. Physiol. Cell Physiol., 292, C698-C707.
18. Jury, D.R., Kaveti, S., Duan, Z.-H., Willard, B., Kinter, M. & Londraville, R. (2008) Effects of calorie restriction on the zebrafish liver proteome. Comp. Biochem. Physiol. Part D Genomics Proteomics, 3, 275-282.
19. Kirchner, S., Kaushik, S. & Panserat, S. (2003) Effect of partial substitution of dietary protein by a single gluconeogenic dispensable amino acid on hepatic glucose metabolism in rainbow trout (Oncorhynchus mykiss). Comp. Biochem. Physiol. A Physiol., 134, 337-347.
20. Kotb, M., Mudd, S.H., Mato, J.M., Geller, A.M., Kredich, N.M., Chou, J.Y. & Cantoni, G.L. (1997) Consensus nomenclature for the mammalian methionine adenosyltransferase genes and gene products. Trends Genet., 13, 51-52.
21. Lee, S.S., Kennedy, S., Tolonen, A.C. & Ruvkun, G. (2003) DAF-16 target genes that control C. elegans life-span and metabolism. Science, 300, 644-647.
22. Lescuyer, P., Strub, J.-M., Luche, S., Diemer, H., Martinez, P., Dorsselaer, A.V., Lunardi, J. & Rabilloud, T. (2003) Progress in the definition of a reference human mitochondrial proteome. Proteomics, 3, 157-167.
23. Liu, R.-Z., Denovan-Wright, E.M. & Wright, J.M. (2003) Structure, mRNA expression and linkage mapping of the brain-type fatty acid-binding protein gene (fabp7) from zebrafish (Danio rerio). Eur. J. Biochem., 270, 715-725.
24. Lopez-Lluch, G., Hunt, N., Jones, B. et al. (2006) Calorie restriction induces mitochondrial biogenesis and bioenergetic efficiency. Proc. Natl Acad. Sci. USA, 103, 1768-1773.
25. Lopez-Lluch, G., Irusta, P.M., Navas, P. & de Cabo, R. (2008) Mitochondrial biogenesis and healthy aging. Exp. Gerontol., 43, 813-819.
26. Manoli, I., Alesci, S., Blackman, M.R., Su, Y.A., Rennert, O.M. & Chrousos, G.P. (2007) Mitochondria as key components of the stress response. Trends Endocrinol. Metab., 18, 190-198.
27. Martin, S.A.M., Cash, P., Blaney, S. & Houlihan, D.F. (2001) Proteome analysis of rainbow trout (Oncorhynchus mykiss) liver proteins during short term starvation. Fish Physiol. Biochem., 24, 259-270.
28. Meton, I., Fernandez, F. & Baanante, I.V. (2003) Short- and long-term effects of refeeding on key enzyme activities in glycolysis-gluconeogenesis in the liver of gilthead seabream (Sparus aurata). Aquaculture, 225, 99-107.
29. Morales, A.E., Perez-Jimenez, A., Carmen Hidalgo, M., Abellan, E. & Cardenete, G. (2004) Oxidative stress and antioxidant defenses after prolonged starvation in Dentex dentex liver. Comp. Biochem. Physiol. C Toxicol. Pharmacol., 139, 153-161.
30. Nikki, J., Pirhonen, J., Jobling, M. & Karjalainen, J. (2004) Compensatory growth in juvenile rainbow trout, Oncorhynchus mykiss (Walbaum), held individually. Aquaculture, 235, 285-296.
31. Ohlmeier, S., Kastaniotis, A.J., Hiltunen, J.K. & Bergmann, U. (2004) The yeast mitochondrial proteome, a study of fermentative and respiratory growth. J. Biol. Chem., 279, 3956-3979.
32. Oyama, T., Isse, T., Kagawa, N., Kinaga, T., Kim, Y.-D., Morita, M., Sugio, K., Weiner, H., Yasumoto, K. & Kawamoto, T. (2005) Tissue-distribution of aldehyde dehydrogenase 2 and effects of the aldh2 gene-disruption on the expression of enzymes involved in alcohol metabolism. Front. Biosci., 10, 951-960.
33. Pascual, P., Pedrajas, J.R., Toribio, F., Lopez-Barea, J. & Peinado, J. (2003) Effect of food deprivation on oxidative stress biomarkers in fish (Sparus aurata). Chem. Biol. Interact., 145, 191-199.
34. Reifschneider, N.H., Goto, S., Nakamoto, H., Takahashi, R., Sugawa, M., Dencher, N.A. & Krause, F. (2006) Defining the mitochondrial proteomes from five rat organs in a physiologically sigificant context using 2D Blue-Native/SDS-PAGE. J. Proteome Res., 5, 1117-1132.
35. Rescan, P.-Y., Montfort, J., Ralliere, C., Le Cam, A., Esquerre, D. & Hugot, K. (2007) Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule. BMC Genomics, 8, 438.
36. Rodgers, B.D., Weber, G.M., Kelley, K.M. & Levine, M.A. (2003) Prolonged fasting and cortisol reduce myostatin mRNA levels in tilapia larvae; short-term fasting elevates. Am. J. Physiol. Regul. Integr. Comp. Physiol., 284, R1277-R1286.
37. Salem, M., Silverstein, J., Rexroad, C.E. III & Yao, J. (2007) Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). BMC Genomics, 8, 328.
38. Sun, F.-C., Wei, S., Li, C.-W., Chang, Y.-S., Chao, C.-C. & Lai, Y.-K. (2006) Localization of GRP78 to mitochondria under the unfolded protein response. Biochem. J., 396, 31-39.
39. Tay, T.L., Lin, Q., Seow, T.K., Tan, K.H., Hew, C.L. & Gong, Z. (2006) Proteomic analysis of protein profiles during early development of the zebrafish, Danio rerio. Proteomics, 6, 3176-3188.
40. Thomas-Moya, E., Gianotti, M., Llado, I. & Proenza, A.M. (2006) Effects of caloric restriction and gender on rat serum paraoxonase 1 activity. J. Nutr. Biochem., 17, 197-203.
41. Turano, M.J., Borski, R.J. & Daniels, H.V. (2008) Effects of cyclic feeding on compensatory growth of hybrid striped bass (Morone chrysops x M. saxitilis) foodfish and water quality in production ponds. Aquacult. Res., 39, 1514-1523.
42. Wenzel, P., M̧ller, J., Zurmeyer, S. et al. (2008) ALDH-2 deficiency increases cardiovascular oxidative stress-Evidence for indirect antioxidative properties. Biochem. Biophys. Res. Commun., 367, 137-143.
43. Westerfield, M. (1994) The Zebrafish Book: A Guide for the Laboratory Use of the Zebrafish (Danio rerio). University of Oregon, Eugene, OR.
44. Xu, D., Guthrie, J.R., Mabry, S., Sack, T.M. & Truog, W.E. (2006) Mitochondrial aldehyde dehydrogenase attenuates hyperoxia-induced cell death through activation of ERK/MAPK and PI3K-Akt pathways in lung epithelial cells. Am. J. Physiol. Lung Cell. Mol. Physiol., 291, L966-L975.
45. Yen, W.-L. & Klionsky, D.J. (2008) How to live long and prosper: autophagy, mitochondria, and aging. Physiology, 23, 248-262.
46. Yu, L., Wan, F., Dutta, S., Welsh, S., Liu, Z., Freundt, E., Baehrecke, E.H. & Lenardo, M. (2006) Autophagic programmed cell death by selective catalase degradation. Proc. Natl Acad. Sci. USA, 103, 4952-4957.
47. Zhang, J., Frerman, F.E. & Kim, J.-J.P. (2006) Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool. Proc. Natl Acad. Sci. USA, 103, 16212-16217.