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Volumn 15, Issue 3, 2011, Pages 133-139

Progress in mining the human proteome for disease applications

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 79952496444     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2010.0111     Document Type: Article
Times cited : (11)

References (53)
  • 1
    • 76649124557 scopus 로고    scopus 로고
    • A gene-centric human proteome project: HUPO-The Human Proteome organization
    • (2010). A gene-centric human proteome project: HUPO-the Human Proteome organization. Mol Cell Proteomics 9, 427-429.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 427-429
  • 2
    • 1842867053 scopus 로고    scopus 로고
    • Effects of conjugated equine estrogen in postmenopausal women with hysterectomy: The women's health initiative randomized controlled trial
    • DOI 10.1001/jama.291.14.1701
    • Anderson, G. L., Limacher, M., Assaf, A. R., Bassford, T., Beresford, S. A., Black, H., et al. (2004). Effects of conjugated equine estrogen in postmenopausal women with hysterectomy: the Women's Health Initiative randomized controlled trial. JAMA 291, 1701-1712. (Pubitemid 38489892)
    • (2004) Journal of the American Medical Association , vol.291 , Issue.14 , pp. 1701-1712
    • Anderson, G.L.1    Limacher, M.2
  • 3
    • 67650602912 scopus 로고    scopus 로고
    • Approaching clinical proteomics: Current state and future fields of application in fluid proteomics
    • Apweiler, R., Aslanidis, C., Deufel, T., Gerstner, A., Hansen, J., Hochstrasser, J., et al. (2009). Approaching clinical proteomics: current state and future fields of application in fluid proteomics. Clin Chem Lab Med 47, 724-744.
    • (2009) Clin. Chem. Lab. Med. , vol.47 , pp. 724-744
    • Apweiler, R.1    Aslanidis, C.2    Deufel, T.3    Gerstner, A.4    Hansen, J.5    Hochstrasser, J.6
  • 4
    • 70350567762 scopus 로고    scopus 로고
    • Comparative analysis of the liver and plasma proteomes as a novel and powerful strategy for hepatocellular carcinoma biomarker discovery
    • Beretta, L. (2009). Comparative analysis of the liver and plasma proteomes as a novel and powerful strategy for hepatocellular carcinoma biomarker discovery. Cancer Lett 286, 134-139.
    • (2009) Cancer Lett. , vol.286 , pp. 134-139
    • Beretta, L.1
  • 6
    • 43849094501 scopus 로고    scopus 로고
    • A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues
    • DOI 10.1074/mcp.M700411-MCP200
    • Bjorling, E., Lindskog, C., Oksvold, P., Linne, J., Kampf, C., Hober, S., et al. (2008). A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues. Mol Cell Proteomics 7, 825-844. (Pubitemid 351737085)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.5 , pp. 825-844
    • Bjorling, E.1    Lindskog, C.2    Oksvold, P.3    Linne, J.4    Kampf, C.5    Hober, S.6    Uhlen, M.7    Ponten, F.8
  • 7
    • 77949423619 scopus 로고    scopus 로고
    • Cerebrospinal fluid and plasma biomarkers in Alzheimer disease
    • Blennow, K., Hampel, H., Weiner, M., and Zetterberg, H. (2010). Cerebrospinal fluid and plasma biomarkers in Alzheimer disease. Nat Rev Neurol 6, 131-144.
    • (2010) Nat. Rev. Neurol. , vol.6 , pp. 131-144
    • Blennow, K.1    Hampel, H.2    Weiner, M.3    Zetterberg, H.4
  • 9
    • 77954619669 scopus 로고    scopus 로고
    • Proteomicsbased biomarkers in chronic obstructive pulmonary disease
    • Chen, H., Wang, D., Bai, C., and Wang, X. (2010). Proteomicsbased biomarkers in chronic obstructive pulmonary disease. J Proteome Res 9, 2798-2808.
    • (2010) J. Proteome Res. , vol.9 , pp. 2798-2808
    • Chen, H.1    Wang, D.2    Bai, C.3    Wang, X.4
  • 10
    • 70349972378 scopus 로고    scopus 로고
    • The cell line secretome, a suitable tool for investigating proteins released in vivo by tumors: Application to the study of p53-modulated proteins secreted in lung cancer cells
    • Chenau, J., Michelland, S., De Fraipont, F., Josserand, V., Coll, J. L., Favrot, M. C., et al. (2009). The cell line secretome, a suitable tool for investigating proteins released in vivo by tumors: application to the study of p53-modulated proteins secreted in lung cancer cells. J Proteome Res 8, 4579-4591.
    • (2009) J. Proteome Res. , vol.8 , pp. 4579-4591
    • Chenau, J.1    Michelland, S.2    De Fraipont, F.3    Josserand, V.4    Coll, J.L.5    Favrot, M.C.6
  • 12
    • 77950644384 scopus 로고    scopus 로고
    • JmzML, an open-source Java API for mzML, the PSI standard for MS data
    • Cote, R. G., Reisinger, F., and Martens, L. (2010). jmzML, an open-source Java API for mzML, the PSI standard for MS data. Proteomics 10, 1332-1335.
    • (2010) Proteomics , vol.10 , pp. 1332-1335
    • Cote, R.G.1    Reisinger, F.2    Martens, L.3
  • 15
    • 48349138726 scopus 로고    scopus 로고
    • Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
    • Daub, H., Olsen, J. V., Bairlein, M., Gnad, F., Oppermann, F. S., Korner, R., et al. (2008). Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. Mol Cell 31, 438-448.
    • (2008) Mol. Cell. , vol.31 , pp. 438-448
    • Daub, H.1    Olsen, J.V.2    Bairlein, M.3    Gnad, F.4    Oppermann, F.S.5    Korner, R.6
  • 18
    • 59149103381 scopus 로고    scopus 로고
    • In-depth proteomics to define the cell surface and secretome of ovarian cancer cells and processes of protein shedding
    • Faca, V. M., and Hanash, S. M. (2009). In-depth proteomics to define the cell surface and secretome of ovarian cancer cells and processes of protein shedding. Cancer Res 69, 728-730.
    • (2009) Cancer Res. , vol.69 , pp. 728-730
    • Faca, V.M.1    Hanash, S.M.2
  • 19
    • 77954732472 scopus 로고    scopus 로고
    • Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells
    • Garge, N., Pan, H., Rowland, M. D., Cargile, B. J., Zhang, X., Cooley, P. C., et al. (2010). Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells. Mol Cell Proteomics 9, 1383-1399.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 1383-1399
    • Garge, N.1    Pan, H.2    Rowland, M.D.3    Cargile, B.J.4    Zhang, X.5    Cooley, P.C.6
  • 20
    • 77952083750 scopus 로고    scopus 로고
    • Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion
    • Greco, T. M., Seeholzer, S. H., Mak, A., Spruce, L., and Ischiropoulos, H., (2010). Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion. J Proteome Res 9, 2764-2774.
    • (2010) J. Proteome Res. , vol.9 , pp. 2764-2774
    • Greco, T.M.1    Seeholzer, S.H.2    Mak, A.3    Spruce, L.4    Ischiropoulos, H.5
  • 21
    • 46749104456 scopus 로고    scopus 로고
    • A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface
    • DOI 10.1002/prca.200780122
    • Gundry, R. L., Boheler, K. R., Van Eyk, J. E., and Wollscheid, B. (2008). A novel role for proteomics in the discovery of cellsurface markers on stem cells: Scratching the surface. Proteomics Clin Appl 2, 892-903. (Pubitemid 351943769)
    • (2008) Proteomics - Clinical Applications , vol.2 , Issue.6 , pp. 892-903
    • Gundry, R.L.1    Boheler, K.R.2    Van Eyk, J.E.3    Wollscheid, B.4
  • 22
    • 2542596176 scopus 로고    scopus 로고
    • HUPO initiatives relevant to clinical proteomics
    • DOI 10.1074/mcp.R400004-MCP200, Cancer Proteomics
    • Hanash, S. (2004). HUPO initiatives relevant to clinical proteomics. Mol Cell Proteomics 3, 298-301. (Pubitemid 38702084)
    • (2004) Molecular and Cellular Proteomics , vol.3 , Issue.4 , pp. 298-301
    • Hanash, S.1
  • 23
    • 41649100689 scopus 로고    scopus 로고
    • Mining the plasma proteome for cancer biomarkers
    • DOI 10.1038/nature06916, PII NATURE06916
    • Hanash, S. M., Pitteri, S. J., and Faca, V. M. (2008). Mining the plasma proteome for cancer biomarkers. Nature 452, 571-579. (Pubitemid 351483371)
    • (2008) Nature , vol.452 , Issue.7187 , pp. 571-579
    • Hanash, S.M.1    Pitteri, S.J.2    Faca, V.M.3
  • 25
    • 33745515108 scopus 로고    scopus 로고
    • The proteomics identifications database (PRIDE) and the proteomExchange consortium: Making proteomics data accessible
    • DOI 10.1586/14789450.3.1.1
    • Hermjakob, H., and Apweiler, R. (2006). The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible. Expert Rev Proteomics 3, 1-3. (Pubitemid 43979386)
    • (2006) Expert Review of Proteomics , vol.3 , Issue.1 , pp. 1-3
    • Hermjakob, H.1    Apweiler, R.2
  • 28
    • 77950850143 scopus 로고    scopus 로고
    • Application of serum proteomics to the Women's Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings
    • Katayama, H., Paczesny, S., Prentice, R., Aragaki, A., Faca, V. M., Pitteri, S. J., et al. (2009). Application of serum proteomics to the Women's Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings. Genome Med 1, 47.
    • (2009) Genome Med. , vol.1 , pp. 47
    • Katayama, H.1    Paczesny, S.2    Prentice, R.3    Aragaki, A.4    Faca, V.M.5    Pitteri, S.J.6
  • 29
    • 67651245201 scopus 로고    scopus 로고
    • Protein arrays as tools for serum autoantibody marker discovery in cancer
    • Kijanka, G., and Murphy, D. (2009). Protein arrays as tools for serum autoantibody marker discovery in cancer. J Proteomics 72, 936-944.
    • (2009) J. Proteomics , vol.72 , pp. 936-944
    • Kijanka, G.1    Murphy, D.2
  • 30
    • 72449200207 scopus 로고    scopus 로고
    • Membrane proteomics for leukemia classification and drug target identification
    • Kohnke, P. L., Mulligan, S. P., and Christopherson, R. I. (2009). Membrane proteomics for leukemia classification and drug target identification. Curr Opin Mol Ther 11, 603-610.
    • (2009) Curr. Opin. Mol. Ther. , vol.11 , pp. 603-610
    • Kohnke, P.L.1    Mulligan, S.P.2    Christopherson, R.I.3
  • 31
    • 70349795274 scopus 로고    scopus 로고
    • Phosphoproteomics reveals new ERK MAP kinase targets and links ERK to nucleoporinmediated nuclear transport
    • Kosako, H., Yamaguchi, N., Aranami, C., Ushiyama, M., Kose, S., Imamoto, N., et al. (2009). Phosphoproteomics reveals new ERK MAP kinase targets and links ERK to nucleoporinmediated nuclear transport. Nat Struct Mol Biol 16, 1026-1035.
    • (2009) Nat. Struct Mol. Biol. , vol.16 , pp. 1026-1035
    • Kosako, H.1    Yamaguchi, N.2    Aranami, C.3    Ushiyama, M.4    Kose, S.5    Imamoto, N.6
  • 33
    • 77950491712 scopus 로고    scopus 로고
    • Relevance of proteomics standards for the ProteoRed Spanish organization
    • Martinez-Bartolome, S., Blanco, F., and Albar, J. P. (2010). Relevance of proteomics standards for the ProteoRed Spanish organization. J Proteomics 73, 1061-1066.
    • (2010) J. Proteomics , vol.73 , pp. 1061-1066
    • Martinez-Bartolome, S.1    Blanco, F.2    Albar, J.P.3
  • 34
    • 68349148249 scopus 로고    scopus 로고
    • From cells, secrets of the secretome leak out
    • May, M. (2009). From cells, secrets of the secretome leak out. Nat Med 15, 828.
    • (2009) Nat. Med. , vol.15 , pp. 828
    • May, M.1
  • 37
    • 77950842431 scopus 로고    scopus 로고
    • Kinome profiling of clinical cancer specimens
    • Parikh, K., and Peppelenbosch, M. P. (2010). Kinome profiling of clinical cancer specimens. Cancer Res 70, 2575-2578.
    • (2010) Cancer Res. , vol.70 , pp. 2575-2578
    • Parikh, K.1    Peppelenbosch, M.P.2
  • 38
    • 77950641486 scopus 로고    scopus 로고
    • Workflow comparison for labelfree, quantitative secretome proteomics for cancer biomarker discovery: Method evaluation, differential analysis, and verification in serum
    • Piersma, S. R., Fiedler, U., Span, S., Lingnau, A., Pham, T. V., Hoffmann, S., et al. (2010). Workflow comparison for labelfree, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum. J Proteome Res 9, 1913-1922.
    • (2010) J. Proteome Res. , vol.9 , pp. 1913-1922
    • Piersma, S.R.1    Fiedler, U.2    Span, S.3    Lingnau, A.4    Pham, T.V.5    Hoffmann, S.6
  • 40
    • 78651305024 scopus 로고    scopus 로고
    • Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling
    • Pitteri, S. J., Paczesny, S. J., Aragaki, A., Amon, L. M., Lin, C., McIntosh, M. W., et al. (2010). Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling. Genome Med (In-press).
    • (2010) Genome Med. (In-press)
    • Pitteri, S.J.1    Paczesny, S.J.2    Aragaki, A.3    Amon, L.M.4    Lin, C.5    McIntosh, M.W.6
  • 41
    • 77649253480 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells
    • Rinschen, M. M., Yu, M. J., Wang, G., Boja, E. S., Hoffert, J. D., Pisitkun, T., et al. (2010). Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells. Proc Natl Acad Sci USA 107, 3882-3887.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 3882-3887
    • Rinschen, M.M.1    Yu, M.J.2    Wang, G.3    Boja, E.S.4    Hoffert, J.D.5    Pisitkun, T.6
  • 43
    • 77951253890 scopus 로고    scopus 로고
    • Antibody array-based technologies for cancer protein profiling and functional proteomic analyses using serum and tissue specimens
    • Sanchez-Carbayo, M. (2010). Antibody array-based technologies for cancer protein profiling and functional proteomic analyses using serum and tissue specimens. Tumour Biol 31, 103-112.
    • (2010) Tumour Biol. , vol.31 , pp. 103-112
    • Sanchez-Carbayo, M.1
  • 44
    • 0344875667 scopus 로고    scopus 로고
    • Public projects gear up to chart the protein landscape
    • DOI 10.1126/science.302.5649.1316
    • Service, R. F. (2003). Proteomics. Public projects gear up to chart the protein landscape. Science 302, 1316-1318. (Pubitemid 37452148)
    • (2003) Science , vol.302 , Issue.5649 , pp. 1316-1318
    • Service, R.F.1
  • 46
    • 33644864034 scopus 로고    scopus 로고
    • Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
    • DOI 10.1038/nbt1183, PII N1183
    • States, D. J., Omenn, G. S., Blackwell, T. W., Fermin, D., Eng, J., Speicher, D. W., et al. (2006). Challenges in deriving highconfidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nat Biotechnol 24, 333-338. (Pubitemid 43372157)
    • (2006) Nature Biotechnology , vol.24 , Issue.3 , pp. 333-338
    • States, D.J.1    Omenn, G.S.2    Blackwell, T.W.3    Fermin, D.4    Eng, J.5    Speicher, D.W.6    Hanash, S.M.7
  • 47
    • 33645750336 scopus 로고    scopus 로고
    • Effects of conjugated equine estrogens on breast cancer and mammography screening in postmenopausal women with hysterectomy
    • Stefanick, M. L., Anderson, G. L., Margolis, K. L., Hendrix, S. L., Rodabough, J. R., Paskett, E. D., et al. (2006). Effects of conjugated equine estrogens on breast cancer and mammography screening in postmenopausal women with hysterectomy. JAMA 295, 1647-1657.
    • (2006) JAMA , vol.295 , pp. 1647-1657
    • Stefanick, M.L.1    Anderson, G.L.2    Margolis, K.L.3    Hendrix, S.L.4    Rodabough, J.R.5    Paskett, E.D.6
  • 48
    • 70449707621 scopus 로고    scopus 로고
    • Antibody-based proteomics: Analysis of signaling networks using reverse protein arrays
    • Voshol, H., Ehrat, M., Traenkle, J., Bertrand, E., and Van Oostrum, J. (2009). Antibody-based proteomics: analysis of signaling networks using reverse protein arrays. FEBS J 276, 6871-6879.
    • (2009) FEBS J. , vol.276 , pp. 6871-6879
    • Voshol, H.1    Ehrat, M.2    Traenkle, J.3    Bertrand, E.4    Van Oostrum, J.5
  • 51
    • 64649086561 scopus 로고    scopus 로고
    • Analytical considerations for mass spectrometry profiling in serum biomarker discovery
    • Whiteley, G. R., Colantonio, S., Sacconi, A., and Saul, R. G. (2009). Analytical considerations for mass spectrometry profiling in serum biomarker discovery. Clin Lab Med 29, 57-69.
    • (2009) Clin. Lab. Med. , vol.29 , pp. 57-69
    • Whiteley, G.R.1    Colantonio, S.2    Sacconi, A.3    Saul, R.G.4
  • 52
    • 77954746901 scopus 로고    scopus 로고
    • Quantitative analysis of the secretome of TGF-beta Signaling-deficient mammary fibroblasts
    • Xu, B. J., YAN, W., Jovanovic, B., An, A. Q., Cheng, N., Aakre, M. E., et al. (2010). Quantitative analysis of the secretome of TGF-beta Signaling-deficient mammary fibroblasts. Proteomics 10, 2458-2470.
    • (2010) Proteomics , vol.10 , pp. 2458-2470
    • Xu, B.J.1    Yan, W.2    Jovanovic, B.3    An, A.Q.4    Cheng, N.5    Aakre, M.E.6
  • 53
    • 73649116726 scopus 로고    scopus 로고
    • Identification of serum biomarkers for colorectal cancer metastasis using a differential secretome approach
    • Xue, H., Lu, B., Zhang, J., Wu, M., Huang, Q., Wu, Q. et al. (2010). Identification of serum biomarkers for colorectal cancer metastasis using a differential secretome approach. J Proteome Res 9, 545-555.
    • (2010) J. Proteome Res. , vol.9 , pp. 545-555
    • Xue, H.1    Lu, B.2    Zhang, J.3    Wu, M.4    Huang, Q.5    Wu, Q.6


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