메뉴 건너뛰기




Volumn 134, Issue 8, 2011, Pages

Molecular jamming-The cystine slipknot mechanical clamp in all-atom simulations

Author keywords

[No Author keywords available]

Indexed keywords

ALL-ATOM SIMULATIONS; ATOMIC MODELS; COARSE GRAINED MODELS; COARSE-GRAINED STRUCTURE; JAMMING STATE; STEERED MOLECULAR DYNAMICS SIMULATIONS; STRETCHING FORCE;

EID: 79952096460     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3553801     Document Type: Article
Times cited : (14)

References (51)
  • 5
    • 1542513548 scopus 로고    scopus 로고
    • Force-Clamp Spectroscopy Monitors the Folding Trajectory of a Single Protein
    • DOI 10.1126/science.1092497
    • J. M. Fernandez and H. B. Li, Science 303, 1674 (2004). 10.1126/science.1092497 (Pubitemid 38338326)
    • (2004) Science , vol.303 , Issue.5664 , pp. 1674-1678
    • Fernandez, J.M.1    Li, H.2
  • 6
    • 0037157105 scopus 로고    scopus 로고
    • 1
    • DOI 10.1016/S0014-5793(02)02693-5, PII S0014579302026935
    • M. T. Alam, T. Yamada, U. Carlsson, and A. Ikai, FEBS Lett. 519, 35 (2002). 10.1016/S0014-5793(02)02693-5 (Pubitemid 34521988)
    • (2002) FEBS Letters , vol.519 , Issue.1-3 , pp. 35-40
    • Alam, M.T.1    Yamada, T.2    Carlsson, U.3    Ikai, A.4
  • 9
    • 0033445338 scopus 로고    scopus 로고
    • 10.1016/S0301-0104(99)00164-0
    • H. Lu and K. Schulten, Chem. Phys. 247, 141 (1999). 10.1016/S0301- 0104(99)00164-0
    • (1999) Chem. Phys. , vol.247 , pp. 141
    • Lu, H.1    Schulten, K.2
  • 11
    • 34547673274 scopus 로고    scopus 로고
    • Mechanical stretching of proteins - A theoretical survey of the Protein Data Bank
    • DOI 10.1088/0953-8984/19/28/283201, PII S0953898407366228
    • J. I. Sukowska and M. Cieplak, J. Phys. Condens. Matter 19, 283201 (2007). 10.1088/0953-8984/19/28/283201 (Pubitemid 47216222)
    • (2007) Journal of Physics Condensed Matter , vol.19 , Issue.28 , pp. 283201
    • Sulkowska, J.I.1    Cieplak, M.2
  • 14
    • 0035239222 scopus 로고    scopus 로고
    • 10.1016/S0041-0101(00)00160-4
    • D. J. Craik, N. L. Dally, and C. Waine, Toxicon 39, 43 (2001). 10.1016/S0041-0101(00)00160-4
    • (2001) Toxicon , vol.39 , pp. 43
    • Craik, D.J.1    Dally, N.L.2    Waine, C.3
  • 17
    • 0027251256 scopus 로고
    • A structural superfamily of growth factors containing a cystine knot motif
    • DOI 10.1016/0092-8674(93)90127-C
    • N. Q. McDonald and W. A. Hendrickson, Cell 73, 421 (1993). 10.1016/0092-8674(93)90127-C (Pubitemid 23143340)
    • (1993) Cell , vol.73 , Issue.3 , pp. 421-424
    • McDonald, N.Q.1    Hendrickson, W.A.2
  • 19
    • 0033579483 scopus 로고    scopus 로고
    • Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif
    • DOI 10.1006/jmbi.1999.3383
    • D. J. Craik, N. L. Daly, T. J. Bond, C. Waine, J. Mol. Biol. 294, 1327 (1999). 10.1006/jmbi.1999.3383 (Pubitemid 30008803)
    • (1999) Journal of Molecular Biology , vol.294 , Issue.5 , pp. 1327-1336
    • Craik, D.J.1    Daly, N.L.2    Bond, T.3    Waine, C.4
  • 23
    • 2442716797 scopus 로고    scopus 로고
    • 10.1126/stke.2312004re7
    • R. M. Stroud and J. A. Wells, Sci STKE 231, re7 (2004). 10.1126/stke.2312004re7
    • (2004) Sci STKE , vol.231 , pp. 7
    • Stroud, R.M.1    Wells, J.A.2
  • 25
    • 33847385325 scopus 로고    scopus 로고
    • Insecticidal plant cyclotides and related cystine knot toxins
    • DOI 10.1016/j.toxicon.2006.11.018, PII S004101010600434X
    • C. W. Gruber, M. Cemazar, M. A. Anderson, and D. J. Craik, Toxicon 49, 561 (2007). 10.1016/j.toxicon.2006.11.018 (Pubitemid 46341392)
    • (2007) Toxicon , vol.49 , Issue.4 , pp. 561-575
    • Gruber, C.W.1    Cemazar, M.2    Anderson, M.A.3    Craik, D.J.4
  • 26
    • 0030962748 scopus 로고    scopus 로고
    • Stretching single protein molecules: Titin is a weird spring
    • DOI 10.1126/science.276.5315.1090
    • H. P. Erickson, Science 276, 1090 (1997). 10.1126/science.276.5315.1090 (Pubitemid 27218110)
    • (1997) Science , vol.276 , Issue.5315 , pp. 1090-1092
    • Erickson, H.P.1
  • 28
    • 0031006659 scopus 로고    scopus 로고
    • Elasticity and unfolding of single molecules of the giant muscle protein titin
    • DOI 10.1038/387308a0
    • L. Tskhovrebova, K. Trinick, J. A. Sleep, and M. Simmons, Nature (London) 387, 308 (1997). 10.1038/387308a0 (Pubitemid 27220769)
    • (1997) Nature , vol.387 , Issue.6630 , pp. 308-312
    • Tskhovrebova, L.1    Trinick, J.2    Sleep, J.A.3    Simmons, R.M.4
  • 29
    • 0031002460 scopus 로고    scopus 로고
    • Folding-unfolding transitions in single titin molecules characterized with laser tweezers
    • DOI 10.1126/science.276.5315.1112
    • M. S. Z. Kellermayer, S. B. Smith, H. L. Granzier, and C. Bustamante, Science 276, 1112 (1997). 10.1126/science.276.5315.1112 (Pubitemid 27218119)
    • (1997) Science , vol.276 , Issue.5315 , pp. 1112-1116
    • Kellermayer, M.S.Z.1    Smith, S.B.2    Granzier, H.L.3    Bustamante, C.4
  • 30
    • 0031011695 scopus 로고    scopus 로고
    • Reversible unfolding of individual titin immunoglobulin domains by AFM
    • DOI 10.1126/science.276.5315.1109
    • M. Rief, M. Gautel, F. Oesterhelt, J. M. Fernandez, and H. E. Gaub, Science 276, 1109 (1997). 10.1126/science.276.5315.1109 (Pubitemid 27218118)
    • (1997) Science , vol.276 , Issue.5315 , pp. 1109-1112
    • Rief, M.1    Gautel, M.2    Oesterhelt, F.3    Fernandez, J.M.4    Gaub, H.E.5
  • 35
  • 36
    • 0347916881 scopus 로고    scopus 로고
    • Comparative Genomic Analysis of the Eight-Membered Ring Cystine Knot-Containing Bone Morphogenetic Protein Antagonists
    • DOI 10.1210/me.2003-0227
    • O. Avisian-Kretchmer and A. J.W. Hsueh, Mol. Endocrinol. 18, 1 (2004). 10.1210/me.2003-0227 (Pubitemid 38073149)
    • (2004) Molecular Endocrinology , vol.18 , Issue.1 , pp. 1-12
    • Avsian-Kretchmer, O.1    Hsueh, A.J.W.2
  • 39
    • 34547709547 scopus 로고    scopus 로고
    • Thermal unfolding of proteins
    • DOI 10.1063/1.2121668, 194908
    • M. Cieplak and J. I. Sukowska, J. Chem. Phys. 123, 194908 (2005). 10.1063/1.2121668 (Pubitemid 41636820)
    • (2005) Journal of Chemical Physics , vol.123 , Issue.19 , pp. 1-4
    • Cieplak, M.1    Sulkowska, J.I.2
  • 49
    • 0033531973 scopus 로고    scopus 로고
    • Forced unfolding of fibronectin type 3 modules: An analysis by biased molecular dynamics simulations
    • DOI 10.1006/jmbi.1999.2670
    • E. Paci and M. Karplus, J. Mol. Biol. 288, 441 (1999). 10.1006/jmbi.1999.2670 (Pubitemid 29221813)
    • (1999) Journal of Molecular Biology , vol.288 , Issue.3 , pp. 441-459
    • Paci, E.1    Karplus, M.2
  • 51
    • 79952088428 scopus 로고    scopus 로고
    • Molecular dynamics simulations of single molecule atomic force microscope experiments
    • edited by (World Scientific, Singapore)
    • W. Nowak and P. Marszalek, Molecular dynamics simulations of single molecule atomic force microscope experiments., in Current Trends in Computational Chemistry, edited by J. Leszczynski (World Scientific, Singapore, 2005), pp. 47-83.
    • (2005) Current Trends in Computational Chemistry , pp. 47-83
    • Nowak, W.1    Marszalek, P.2    Leszczynski, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.