Expanding the versatility of phage display II: Improved affinity selection of folded domains on protein VII and IX of the filamentous phage

PLoS ONE

Volumn 6, Issue 2, 2011, Pages

  Løset, Geir Åge ^a   Roos, Norbert ^a   Bogen, Bjarne ^a   Sandlie, Inger ^a  

^a UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; COAT PROTEIN; COAT PROTEIN III; COAT PROTEIN IX; COAT PROTEIN VI; COAT PROTEIN VII; COAT PROTEIN VIII; UNCLASSIFIED DRUG; VIRUS PROTEIN; HYBRID PROTEIN; PEPTIDE LIBRARY;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; CYTOPLASM VESICLE; HELPER VIRUS; INTRACELLULAR SIGNALING; MOLECULAR LIBRARY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAGE DISPLAY; PHAGEMID; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FOLDING; VIRION; VIROPHAGE; VIRUS GENOME; VIRUS REPLICATION; AMINO ACID SEQUENCE; BACTERIOPHAGE; BIOLOGICAL MODEL; CHEMISTRY; EVALUATION; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; BACTERIOPHAGES; CAPSID PROTEINS; CLONING, MOLECULAR; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS;

EID: 79952081586     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0017433     Document Type: Article

References (38)

1. Bratkovic T, (2010) Progress in phage display: evolution of the technique and its applications. Cell Mol Life Sci 67: 749-767.
2. Sidhu SS, Lowman HB, Cunningham BC, Wells JA, (2000) Phage display for selection of novel binding peptides. Methods Enzymol 328: 333-363.
3. Hoogenboom HR, (2005) Selecting and screening recombinant antibody libraries. Nat Biotechnol 23: 1105-1116.
4. Simons GF, Konings RN, Schoenmakers JG, (1981) Genes VI, VII, and IX of phage M13 code for minor capsid proteins of the virion. PNAS 78: 4194-4198.
5. Karlsson F, Borrebaeck CAK, Nilsson N, Malmborg-Hager A-C, (2003) The Mechanism of Bacterial Infection by Filamentous Phages Involves Molecular Interactions between TolA and Phage Protein 3 Domains. J Bacteriol 185: 2628-2634.
6. Endemann H, Model P, (1995) Lcoation of Filamentous Phage Minor Coat Proteins in Phage and in Infected Cells. Journal of Molecular Biology 250: 496-506.
7. Malik P, Terry TD, Gowda LR, Langara A, Petukhov SA, et al. (1996) Role of capsid structure and membrane protein processing in determining the size and copy number of peptides displayed on the major coat protein of filamentous bacteriophage. J Mol Biol 260: 9-21.
8. Iannolo G, Minenkova O, Petruzzelli R, Cesareni G, (1995) Modifying filamentous phage capsid: limits in the size of the major capsid protein. J Mol Biol 248: 835-844.
9. Kretzschmar T, Geiser M, (1995) Evaluation of antibodies fused to minor coat protein III and major coat protein VIII of bacteriophage M13. Gene 155: 61-65.
10. Pavoni E, Monteriu G, Cianfriglia M, Minenkova O, (2007) New display vector reduces biological bias for expression of antibodies in E. coli. Gene 391: 120-129.
11. Løset GÅ, Kristinsson SG, Sandlie I, (2008) Reliable titration of filamentous bacteriophages independent of pIII fusion moiety and genome size by using trypsin to restore wild-type pIII phenotype. BioTechniques 44: 551-554.
12. Shi B, Wang H, Guo S, Xu Y, Li Z, et al. (2007) Protein III-based single-chain antibody phage display using bacterial cells bearing an additional genome of a gene-III-lacking helper phage. Biotechniques 42: 760-765.
13. Gao C, Mao S, Lo C-HL, Wirsching P, Lerner RA, et al. (1999) Making artificial antibodies: A format for phage display of combinatorial heterodimeric arrays. PNAS 96: 6025-6030.
14. Gao C, Mao S, Kaufmann G, Wirsching P, Lerner RA, et al. (2002) A method for the generation of combinatorial antibody libraries using pIX phage display. PNAS 99: 12612-12616.
15. Tornetta M, Baker S, Whitaker B, Lu J, Chen Q, et al. (2010) Antibody Fab display and selection through fusion to the pIX coat protein of filamentous phage. J Immunol Methods.
16. Shi L, Wheeler JC, Sweet RW, Lu J, Luo J, et al. (2010) De novo selection of high-affinity antibodies from synthetic fab libraries displayed on phage as pIX fusion proteins. J Mol Biol 397: 385-396.
17. Løset GÅ, Lunde E, Bogen B, Brekke OH, Sandlie I, (2007) Functional phage display of two murine α/β T-cell receptors is strongly dependent on fusion format, mode and periplasmic folding assistance. Protein Eng Des Sel 20: 461-472.
18. Løset GÅ, Løbersli I, Kavlie A, Stacy JE, Borgen T, et al. (2005) Construction, evaluation and refinement of a large human antibody phage library based on the IgD and IgM variable gene repertoire. J Immunol Methods 299: 47-62.
19. Oakley AJ, Lo Bello M, Battistoni A, Ricci G, Rossjohn J, et al. (1997) The structures of human glutathione transferase P1-1 in complex with glutathione and various inhibitors at high resolution. J Mol Biol 274: 84-100.
20. Kwasnikowski P, Kristensen P, Markiewicz WT, (2005) Multivalent display system on filamentous bacteriophage pVII minor coat protein. J Immunol Methods 307: 135-143.
21. Bothmann H, Pluckthun A, (2000) The periplasmic Escherichia coli peptidylprolyl cis,trans-isomerase FkpA. I. Increased functional expression of antibody fragments with and without cis-prolines. J Biol Chem 275: 17100-17105.
22. Jestin JL, Volioti G, Winter G, (2001) Improving the display of proteins on filamentous phage. Res Microbiol 152: 187-191.
23. Steiner D, Forrer P, Stumpp MT, Pluckthun A, (2006) Signal sequences directing cotranslational translocation expand the range of proteins amenable to phage display. Nat Biotechnol 24: 823-831.
24. Scott N, Reynolds CB, Wright MJ, Qazi O, Fairweather N, et al. (2008) Single-chain Fv phage display propensity exhibits strong positive correlation with overall expression levels. BMC Biotechnol 8: 97.
25. Rothe C, Urlinger S, Lohning C, Prassler J, Stark Y, et al. (2008) The human combinatorial antibody library HuCAL GOLD combines diversification of all six CDRs according to the natural immune system with a novel display method for efficient selection of high-affinity antibodies. J Mol Biol 376: 1182-1200.
26. Balass M, Morag E, Bayer EA, Fuchs S, Wilchek M, et al. (1996) Recovery of high-affinity phage from a nitrostreptavidin matrix in phage-display technology. Anal Biochem 243: 264-269.
27. Shen LM, Lee JI, Cheng SY, Jutte H, Kuhn A, et al. (1991) Use of site-directed mutagenesis to define the limits of sequence variation tolerated for processing of the M13 procoat protein by the Escherichia coli leader peptidase. Biochemistry 30: 11775-11781.
28. Malik P, Terry TD, Bellintani F, Perham RN, (1998) Factors limiting display of foreign peptides on the major coat protein of filamentous bacteriophage capsids and a potential role for leader peptidase. FEBS Lett 436: 263-266.
29. Michaelsen TE, Aase A, Westby C, Sandlie I, (1990) Enhancement of complement activation and cytolysis of human IgG3 by deletion of hinge exons. Scand J Immunol 32: 517-528.
30. Bogen B, Lauritzsen GF, Weiss S, (1990) A stimulatory monoclonal antibody detecting T cell receptor diversity among idiotype-specific, major histocompatibility complex-restricted T cell clones. Eur J Immunol 20: 2359-2362.
31. Sambrook J, Russell DW, (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY Cold Spring Harbor Laboratory Press. 3 b.
32. Welschof M, Terness P, Kipriyanov SM, Stanescu D, Breitling F, et al. (1997) The antigen-binding domain of a human IgG-anti-F(ab')2 autoantibody. PNAS 94: 1902-1907.
33. Marks JD, Hoogenboom HR, Bonnert TP, McCafferty J, Griffiths AD, et al. (1991) By-passing immunization. Human antibodies from V-gene libraries displayed on phage. J Mol Biol 222: 581-597.
34. Weibel ER, (1979) Practical Methods for Biological Morphometry. London Academic Press.
35. Gailus V, Rasched I, (1994) The adsorption protein of bacteriophage fd and its neighbour minor coat protein build a structural entity. Eur J Biochem 222: 927-931.
36. Marzec CJ, Day LA, (1983) DNA and protein lattice-lattice interactions in the filamentous bacteriophages. Biophys J 42: 171-180.
37. Kipriyanov SM, Moldenhauer G, Little M, (1997) High level production of soluble single chain antibodies in small-scale Escherichia coli cultures. J Immunol Methods 200: 69-77.
38. Makowski L, (1993) Structural constraints on the display of foreign peptides on filamentous bacteriophages. Gene 128: 5-11.