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Volumn 16, Issue 2, 2011, Pages 230-238

A high-throughput fluorescence polarization assay for inhibitors of gyrase B

Author keywords

anthracycline; assay development; fluorescence polarization; gyrase; high throughput screen

Indexed keywords

ADENOSINE TRIPHOSPHATE; ANTIBIOTIC AGENT; DAUNORUBICIN; DNA TOPOISOMERASE (ATP HYDROLYSING) A; DNA TOPOISOMERASE (ATP HYDROLYSING) B; DOXORUBICIN; EPIRUBICIN; HOLOENZYME; IDARUBICIN; ISOMERASE INHIBITOR; N ETHYL N' [7 (2 PYRIDINYL) 5 (3 PYRIDINYL) 1H BENZIMIDAZOL 2 YL]UREA; NOVOBIOCIN; PROTEIN SUBUNIT; UNCLASSIFIED DRUG; VERTEX 13;

EID: 79951996244     PISSN: 10870571     EISSN: 1552454X     Source Type: Journal    
DOI: 10.1177/1087057110392038     Document Type: Article
Times cited : (13)

References (28)
  • 1
    • 34247350048 scopus 로고    scopus 로고
    • Thirty years of Escherichia coli DNA gyrase: From in vivo function to single-molecule mechanism
    • DOI 10.1016/j.biochi.2007.02.012, PII S0300908407000478, DNA Topology DNA, more than just a ladder: A tribute to Michel Duguet
    • Nollmann M., Crisona NJ, Arimondo PB: Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism. Biochimie 2007 ; 89: 490-499. (Pubitemid 46634704)
    • (2007) Biochimie , vol.89 , Issue.4 , pp. 490-499
    • Nollmann, M.1    Crisona, N.J.2    Arimondo, P.B.3
  • 2
    • 0029911698 scopus 로고    scopus 로고
    • Recent developments in DNA topoisomerase II structure and mechanism
    • DOI 10.1016/S0959-440X(96)80099-6
    • Berger JM, Wang JC: Recent developments in DNA topoisomerase II structure and mechanism. Curr Opin Struct Biol 1996 ; 6: 84-90. (Pubitemid 26073948)
    • (1996) Current Opinion in Structural Biology , vol.6 , Issue.1 , pp. 84-90
    • Berger, J.M.1    Wang, J.C.2
  • 3
    • 28844455588 scopus 로고    scopus 로고
    • Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism
    • DOI 10.1042/BST20051465
    • Schoeffler AJ, Berger JM: Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism. Biochem Soc Trans 2005 ; 33: 1465-1470. (Pubitemid 41779716)
    • (2005) Biochemical Society Transactions , vol.33 , Issue.6 , pp. 1465-1470
    • Schoeffler, A.J.1    Berger, J.M.2
  • 5
    • 34548628774 scopus 로고    scopus 로고
    • Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents
    • Marko O., Miha K., Tom S.: Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents. Curr Med Chem 2007 ; 14: 2033-2047.
    • (2007) Curr Med Chem , vol.14 , pp. 2033-2047
    • Marko, O.1    Miha, K.2    Tom, S.3
  • 6
    • 0029012319 scopus 로고
    • Characterization of the binding site for cyclothialidine on the B subunit of DNA gyrase
    • Nakada N., Gmünder H., Hirata T., Arisawa M.: Characterization of the binding site for cyclothialidine on the B subunit of DNA gyrase. J Biol Chem 1995 ; 270: 14286-14291.
    • (1995) J Biol Chem , vol.270 , pp. 14286-14291
    • Nakada, N.1    Gmünder, H.2    Hirata, T.3    Arisawa, M.4
  • 7
    • 0023623924 scopus 로고
    • Mechanisms of action of and resistance to ciprofloxacin
    • Hooper DC, Wolfson JS, Ng EY, Swartz MN: Mechanisms of action of and resistance to ciprofloxacin. Am J Med 1987 ; 82: 12-20.
    • (1987) Am J Med , vol.82 , pp. 12-20
    • Hooper, D.C.1    Wolfson, J.S.2    Ng, E.Y.3    Swartz, M.N.4
  • 8
    • 0022972372 scopus 로고
    • The mode of action of 4-quinolones and possible mechanisms of resistance
    • Smith JT: The mode of action of 4-quinolones and possible mechanisms of resistance. J Antimicrob Chemother 1986 ; 18 (suppl D). 21-29. (Pubitemid 17214190)
    • (1986) Journal of Antimicrobial Chemotherapy , vol.18 , Issue.SUPPL. D , pp. 21-29
    • Smith, J.T.1
  • 11
    • 0024398661 scopus 로고
    • Tryptic fragments of the Escherichia coli DNA gyrase A protein
    • Reece RJ, Maxwell A.: Tryptic fragments of the Escherichia coli DNA gyrase A protein. J Biol Chem 1989 ; 264: 19648-19653. (Pubitemid 20008070)
    • (1989) Journal of Biological Chemistry , vol.264 , Issue.33 , pp. 19648-19653
    • Reece, R.J.1    Maxwell, A.2
  • 12
    • 2142752537 scopus 로고    scopus 로고
    • Development and use of a high-throughput bacterial DNA gyrase assay to identify mammalian topoisomerase II inhibitors with whole-cell anticancer activity
    • Roychoudhury S., Makin KM, Twinem TL, Stanton DT, Nelson SL, Catrenich CE: Development and use of a high-throughput bacterial DNA gyrase assay to identify mammalian topoisomerase II inhibitors with whole-cell anticancer activity. J Biomol Screen 2003 ; 8: 157-163.
    • (2003) J Biomol Screen , vol.8 , pp. 157-163
    • Roychoudhury, S.1    Makin, K.M.2    Twinem, T.L.3    Stanton, D.T.4    Nelson, S.L.5    Catrenich, C.E.6
  • 13
    • 77449140073 scopus 로고    scopus 로고
    • A high-throughput assay for DNA topoisomerases and other enzymes, based on DNA triplex formation
    • Burrell MR, Burton NP, Maxwell A.: A high-throughput assay for DNA topoisomerases and other enzymes, based on DNA triplex formation. Methods Mol Biol 2010 ; 613: 257-266.
    • (2010) Methods Mol Biol , vol.613 , pp. 257-266
    • Burrell, M.R.1    Burton, N.P.2    Maxwell, A.3
  • 14
    • 34548371792 scopus 로고    scopus 로고
    • A high-throughput, homogeneous, bioluminescent assay for Pseudomonas aeruginosa gyrase inhibitors and other DNA-damaging agents
    • DOI 10.1177/1087057107304729
    • Moir DT, Ming D., Opperman T., Schweizer HP, Bowlin TL: A high-throughput, homogeneous, bioluminescent assay for Pseudomonas aeruginosa gyrase inhibitors and other DNA-damaging agents. J Biomol Screen 2007 ; 12: 855-864. (Pubitemid 47340706)
    • (2007) Journal of Biomolecular Screening , vol.12 , Issue.6 , pp. 855-864
    • Moir, D.T.1    Di, M.2    Opperman, T.3    Schweizer, H.P.4    Bowlin, T.L.5
  • 15
    • 0036149670 scopus 로고    scopus 로고
    • A scintillation proximity assay amenable for screening and characterization of DNA gyrase B subunit inhibitors
    • DOI 10.1006/abio.2001.5406
    • Gevi M., Domenici E.: A scintillation proximity assay amenable for screening and characterization of DNA gyrase B subunit inhibitors. Anal Biochem 2002 ; 300: 34-39. (Pubitemid 34066802)
    • (2002) Analytical Biochemistry , vol.300 , Issue.1 , pp. 34-39
    • Gevi, M.1    Domenici, E.2
  • 16
    • 0033773937 scopus 로고    scopus 로고
    • Fluorescence polarization and anisotropy in high throughput screening: Perspectives and primer
    • Owicki JC: Fluorescence polarization and anisotropy in high throughput screening: perspectives and primer. J Biomol Screen 2000 ; 5: 297-306.
    • (2000) J Biomol Screen , vol.5 , pp. 297-306
    • Owicki, J.C.1
  • 17
    • 11144265736 scopus 로고    scopus 로고
    • A general framework for development and data analysis of competitive high-throughput screens for small-molecule inhibitors of protein-protein interactions by fluorescence polarization
    • DOI 10.1021/bi048233g
    • Roehrl MH, Wang JY, Wagner G.: A general framework for development and data analysis of competitive high-throughput screens for small-molecule inhibitors of protein-protein interactions by fluorescence polarization. Biochemistry 2004 ; 43: 16056-16066. (Pubitemid 40041019)
    • (2004) Biochemistry , vol.43 , Issue.51 , pp. 16056-16066
    • Roehrl, M.H.A.1    Wang, J.Y.2    Wagner, G.3
  • 18
    • 0037166285 scopus 로고    scopus 로고
    • An open conformation of the Thermus thermophilus gyrase B ATP-binding domain
    • DOI 10.1074/jbc.M111740200
    • Lamour V., Hoermann L., Jeltsch JM, Oudet P., Moras D.: An open conformation of the Thermus thermophilus gyrase B ATP-binding domain. J Biol Chem 2002 ; 277: 18947-18953. (Pubitemid 34952456)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.21 , pp. 18947-18953
    • Lamour, V.1    Hoermann, L.2    Jeltsch, J.-M.3    Oudet, P.4    Moras, D.5
  • 19
    • 13944273799 scopus 로고    scopus 로고
    • The complete genome sequence of Francisella tularensis, the causative agent of tularemia
    • Larsson P., Oyston PC, Chain P., Chu MC, Duffield M., Fuxelius HH,, et al. The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nat Genet 2005 ; 37: 153-159.
    • (2005) Nat Genet , vol.37 , pp. 153-159
    • Larsson, P.1    Oyston, P.C.2    Chain, P.3    Chu, M.C.4    Duffield, M.5    Fuxelius, H.H.6
  • 20
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • DOI 10.1177/108705719900400206
    • Zhang JH, Chung TD, Oldenburg KR: A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 1999 ; 4: 67-73. (Pubitemid 29278954)
    • (1999) Journal of Biomolecular Screening , vol.4 , Issue.2 , pp. 67-73
    • Zhang, J.-H.1    Chung, T.D.Y.2    Oldenburg, K.R.3
  • 21
    • 51849112827 scopus 로고    scopus 로고
    • Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: Intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships
    • Charifson PS, Grillot AL, Grossman TH, Parsons JD, Badia M., Bellon S.,, et al. Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships. J Med Chem 2008 ; 51: 5243-5263.
    • (2008) J Med Chem , vol.51 , pp. 5243-5263
    • Charifson, P.S.1    Grillot, A.L.2    Grossman, T.H.3    Parsons, J.D.4    Badia, M.5    Bellon, S.6
  • 22
    • 0030758672 scopus 로고    scopus 로고
    • The entropic penalty of ordered water accounts for weaker binding of the antibiotic novobiocin to a resistant mutant of DNA gyrase: A thermodynamic and crystallographic study
    • DOI 10.1021/bi970294+
    • Holdgate GA, Tunnicliffe A., Ward WH, Weston SA, Rosenbrock G., Barth PT,, et al. The entropic penalty of ordered water accounts for weaker binding of the antibiotic novobiocin to a resistant mutant of DNA gyrase: a thermodynamic and crystallographic study. Biochemistry 1997 ; 36: 9663-9673. (Pubitemid 27364677)
    • (1997) Biochemistry , vol.36 , Issue.32 , pp. 9663-9673
    • Holdgate, G.A.1    Tunnicliffe, A.2    Ward, W.H.J.3    Weston, S.A.4    Rosenbrock, G.5    Barth, P.T.6    Taylor, I.W.F.7    Pauptit, R.A.8    Timms, D.9
  • 24
    • 65649115821 scopus 로고    scopus 로고
    • Chromosomal aberration and micronucleus studies of two topoisomerase (II) targeting anthracyclines
    • Khan F., Sherwani AF, Afzal M.: Chromosomal aberration and micronucleus studies of two topoisomerase (II) targeting anthracyclines. J Environ Biol 2009 ; 30: 409-412.
    • (2009) J Environ Biol , vol.30 , pp. 409-412
    • Khan, F.1    Sherwani, A.F.2    Afzal, M.3
  • 25
    • 72949107121 scopus 로고    scopus 로고
    • Effect of the anti-neoplastic drug doxorubicin on XPD-mutated DNA repair-deficient human cells
    • Amst)
    • Saffi J., Agnoletto MH, Guecheva TN, Batista LF, Carvalho H., Henriques JA,, et al. Effect of the anti-neoplastic drug doxorubicin on XPD-mutated DNA repair-deficient human cells. DNA Repair (Amst) 2010 ; 9: 40-47.
    • (2010) DNA Repair , vol.9 , pp. 40-47
    • Saffi, J.1    Agnoletto, M.H.2    Guecheva, T.N.3    Batista, L.F.4    Carvalho, H.5    Henriques, J.A.6
  • 27
    • 0347764785 scopus 로고    scopus 로고
    • Anthracycline-dependent heat-induced transition from positive to negative supercoiled DNA
    • DOI 10.1002/elps.200305388
    • Viglasky V., Valle F., Adamcik J., Joab I., Podhradsky D., Dietler G.: Anthracycline-dependent heat-induced transition from positive to negative supercoiled DNA. Electrophoresis 2003 ; 24: 1703-1711. (Pubitemid 38088956)
    • (2003) Electrophoresis , vol.24 , Issue.11 , pp. 1703-1711
    • Viglasky, V.1    Valle, F.2    Adamoik, J.3    Joab, I.4    Podhradsky, D.5    Dietler, G.6
  • 28
    • 0014945759 scopus 로고
    • Variation of the supercoils in closed circular DNA by binding of antibiotics and drugs: Evidence for molecular models involving intercalation
    • Waring M.: Variation of the supercoils in closed circular DNA by binding of antibiotics and drugs: evidence for molecular models involving intercalation. J Mol Biol 1970 ; 54: 247-279.
    • (1970) J Mol Biol , vol.54 , pp. 247-279
    • Waring, M.1


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