-
1
-
-
33646138246
-
The metal- and DNA-binding activities of Helicobacter pylori NikR
-
Abraham, L. O., Y. Li, and D. B. Zamble. 2006. The metal- and DNA-binding activities of Helicobacter pylori NikR. J. Inorg. Biochem. 100:1005-1014.
-
(2006)
J. Inorg. Biochem.
, vol.100
, pp. 1005-1014
-
-
Abraham, L.O.1
Li, Y.2
Zamble, D.B.3
-
2
-
-
77953257812
-
Structural and mechanistic insights into Helicobacter pylori NikR activation
-
Bahlawane, C., et al. 2010. Structural and mechanistic insights into Helicobacter pylori NikR activation. Nucleic Acids Res. 38:3106-3118.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3106-3118
-
-
Bahlawane, C.1
-
3
-
-
0031696507
-
Functional analysis of the Helicobacter pylori principal sigma subunit of RNA polymerase reveals that the spacer region is important for efficient transcription
-
Beier, D., G. Spohn, R. Rappuoli, and V. Scarlato. 1998. Functional analysis of the Helicobacter pylori principal sigma subunit of RNA polymerase reveals that the spacer region is important for efficient transcription. Mol. Microbiol. 30:121-134.
-
(1998)
Mol. Microbiol.
, vol.30
, pp. 121-134
-
-
Beier, D.1
Spohn, G.2
Rappuoli, R.3
Scarlato, V.4
-
4
-
-
64049107915
-
An intact urease assembly pathway is required to compete with NikR for nickel ions in Helicobacter pylori
-
Benanti, E. L., and P. T. Chivers. 2009. An intact urease assembly pathway is required to compete with NikR for nickel ions in Helicobacter pylori. J. Bacteriol. 191:2405-2408.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2405-2408
-
-
Benanti, E.L.1
Chivers, P.T.2
-
5
-
-
34547130605
-
The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA binding
-
Benanti, E. L., and P. T. Chivers. 2007. The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA binding. J. Biol. Chem. 282:20365-20375.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20365-20375
-
-
Benanti, E.L.1
Chivers, P.T.2
-
6
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning, D. F., and S. J. Busby. 2004. The regulation of bacterial transcription initiation. Nat. Rev. Microbiol. 2:57-65.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 57-65
-
-
Browning, D.F.1
Busby, S.J.2
-
7
-
-
3242881125
-
Responsiveness to activity via metal ion regulators mediates virulense in the gastric pathogen Helicobacter pylori
-
DOI 10.1111/j.1365-2958.2004.04137.x
-
Bury-Mone, S., et al. 2004. Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori. Mol. Microbiol. 53:623-638. (Pubitemid 38998180)
-
(2004)
Molecular Microbiology
, vol.53
, Issue.2
, pp. 623-638
-
-
Bury-Mone, S.1
Thiberge, J.-M.2
Contreras, M.3
Maitournam, A.4
Labigne, A.5
De, R.H.6
-
8
-
-
0032697047
-
NikR is a ribbon-helix-helix DNA-binding protein
-
Chivers, P. T., and R. T. Sauer. 1999. NikR is a ribbon-helix-helix DNA-binding protein. Protein Sci. 8:2494-2500.
-
(1999)
Protein Sci.
, vol.8
, pp. 2494-2500
-
-
Chivers, P.T.1
Sauer, R.T.2
-
9
-
-
0034733505
-
Regulation of high affinity nickel uptake in bacteria. Ni2+-dependent interaction of NikR with wild-type and mutant operator sites
-
Chivers, P. T., and R. T. Sauer. 2000. Regulation of high affinity nickel uptake in bacteria. Ni2+-dependent interaction of NikR with wild-type and mutant operator sites. J. Biol. Chem. 275:19735-19741.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19735-19741
-
-
Chivers, P.T.1
Sauer, R.T.2
-
10
-
-
0042065267
-
Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori
-
DOI 10.1046/j.1365-2958.2003.03621.x
-
Contreras, M., J. M. Thiberge, M. A. Mandrand-Berthelot, and A. Labigne. 2003. Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori. Mol. Microbiol. 49:947-963. (Pubitemid 36981341)
-
(2003)
Molecular Microbiology
, vol.49
, Issue.4
, pp. 947-963
-
-
Contreras, M.1
Thiberge, J.-M.2
Mandrand-Berthelot, M.-A.3
Labigne, A.4
-
11
-
-
0035816213
-
Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides
-
Costa, M., et al. 2001. Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides. J. Mol. Biol. 310:403-417.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 403-417
-
-
Costa, M.1
-
12
-
-
66149112914
-
Growth phase and metal-dependent transcriptional regulation of the fecA genes in Helicobacter pylori
-
Danielli, A., et al. 2009. Growth phase and metal-dependent transcriptional regulation of the fecA genes in Helicobacter pylori. J. Bacteriol. 191:3717-3725.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3717-3725
-
-
Danielli, A.1
-
13
-
-
77955129867
-
Regulatory circuits in Helicobacter pylori: Network motifs and regulators involved in metal-dependent responses
-
Danielli, A., and V. Scarlato. 2010. Regulatory circuits in Helicobacter pylori: network motifs and regulators involved in metal-dependent responses. FEMS Microbiol. Rev. 34:738-752.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 738-752
-
-
Danielli, A.1
Scarlato, V.2
-
14
-
-
33845505250
-
Helicobacter pylori HP1512 is a nickel-responsive NikR-regulated outer membrane protein
-
Davis, G. S., E. L. Flannery, and H. L. Mobley. 2006. Helicobacter pylori HP1512 is a nickel-responsive NikR-regulated outer membrane protein. Infect. Immun. 74:6811-6820.
-
(2006)
Infect. Immun.
, vol.74
, pp. 6811-6820
-
-
Davis, G.S.1
Flannery, E.L.2
Mobley, H.L.3
-
15
-
-
27744481253
-
In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori
-
DOI 10.1128/JB.187.22.7703-7715.2005
-
Delany, I., et al. 2005. In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori. J. Bacteriol. 187:7703-7715. (Pubitemid 41587709)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.22
, pp. 7703-7715
-
-
Delany, I.1
Ieva, R.2
Soragni, A.3
Hilleringmann, M.4
Rappuoli, R.5
Scarlato, V.6
-
16
-
-
0036718563
-
Growth phase-dependent regulation of target gene promoters for binding of the essential orphan response regulator HP1043 of Helicobacter pylori
-
Delany, I., G. Spohn, R. Rappuoli, and V. Scarlato. 2002. Growth phase-dependent regulation of target gene promoters for binding of the essential orphan response regulator HP1043 of Helicobacter pylori. J. Bacteriol. 184:4800-4810.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4800-4810
-
-
Delany, I.1
Spohn, G.2
Rappuoli, R.3
Scarlato, V.4
-
17
-
-
0032932493
-
Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli
-
De Pina, K., V. Desjardin, M. A. Mandrand-Berthelot, G. Giordano, and L. F. Wu. 1999. Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli. J. Bacteriol. 181:670-674.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 670-674
-
-
De Pina, K.1
Desjardin, V.2
Mandrand-Berthelot, M.A.3
Giordano, G.4
Wu, L.F.5
-
18
-
-
33746849786
-
Structural basis of the nickel response in Helicobacter pylori: Crystal structures of HpNikR in apo and nickel-bound states
-
Dian, C., et al. 2006. Structural basis of the nickel response in Helicobacter pylori: crystal structures of HpNikR in apo and nickel-bound states. J. Mol. Biol. 361:715-730.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 715-730
-
-
Dian, C.1
-
19
-
-
33847646219
-
Characterization of the Helicobacter pylori NikR-P(ureA) DNA interaction: Metal ion requirements and sequence specificity
-
Dosanjh, N. S., N. A. Hammerbacher, and S. L. Michel. 2007. Characterization of the Helicobacter pylori NikR-P(ureA) DNA interaction: metal ion requirements and sequence specificity. Biochemistry 46:2520-2529.
-
(2007)
Biochemistry
, vol.46
, pp. 2520-2529
-
-
Dosanjh, N.S.1
Hammerbacher, N.A.2
Michel, S.L.3
-
20
-
-
59249087478
-
Helicobacter pylori NikR's interaction with DNA: A two-tiered mode of recognition
-
Dosanjh, N. S., A. L. West, and S. L. Michel. 2009. Helicobacter pylori NikR's interaction with DNA: a two-tiered mode of recognition. Biochemistry 48:527-536.
-
(2009)
Biochemistry
, vol.48
, pp. 527-536
-
-
Dosanjh, N.S.1
West, A.L.2
Michel, S.L.3
-
21
-
-
27744569940
-
The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori
-
DOI 10.1128/IAI.73.11.7252-7258.2005
-
Ernst, F. D., et al. 2005. The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori. Infect. Immun. 73:7252-7258. (Pubitemid 41587623)
-
(2005)
Infection and Immunity
, vol.73
, Issue.11
, pp. 7252-7258
-
-
Ernst, F.D.1
Kuipers, E.J.2
Heijens, A.3
Sarwari, R.4
Stoof, J.5
Penn, C.W.6
Kusters, J.G.7
Van, V.A.H.M.8
-
22
-
-
33845488317
-
NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512)
-
Ernst, F. D., et al. 2006. NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512). Infect. Immun. 74:6821-6828.
-
(2006)
Infect. Immun.
, vol.74
, pp. 6821-6828
-
-
Ernst, F.D.1
-
23
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
24
-
-
64849097266
-
The pH-responsive DNA-binding activity of Helicobacter pylori NikR
-
Li, Y., and D. Zamble. 2009. The pH-responsive DNA-binding activity of Helicobacter pylori NikR. Biochemistry 48:2486-2496.
-
(2009)
Biochemistry
, vol.48
, pp. 2486-2496
-
-
Li, Y.1
Zamble, D.2
-
25
-
-
0031974434
-
Three-minute G + A specific reaction for DNA sequencing
-
Liu, S. T., and G. F. Hong. 1998. Three-minute G + A specific reaction for DNA sequencing. Anal. Biochem. 255:158-159.
-
(1998)
Anal. Biochem.
, vol.255
, pp. 158-159
-
-
Liu, S.T.1
Hong, G.F.2
-
26
-
-
73349109189
-
The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes
-
Ni, L., et al. 2009. The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes. Nucleic Acids Res. 37:6970-6983.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6970-6983
-
-
Ni, L.1
-
27
-
-
70350552019
-
RelB and RelE of Escherichia coli form a tight complex that represses transcription via the ribbon-helix-helix motif in RelB
-
Overgaard, M., J. Borch, and K. Gerdes. 2009. RelB and RelE of Escherichia coli form a tight complex that represses transcription via the ribbon-helix-helix motif in RelB. J. Mol. Biol. 394:183-196.
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 183-196
-
-
Overgaard, M.1
Borch, J.2
Gerdes, K.3
-
28
-
-
0030798605
-
Clues and consequences of DNA bending in transcription
-
Perez-Martin, J., and V. de Lorenzo. 1997. Clues and consequences of DNA bending in transcription. Annu. Rev. Microbiol. 51:593-628.
-
(1997)
Annu. Rev. Microbiol.
, vol.51
, pp. 593-628
-
-
Perez-Martin, J.1
De Lorenzo, V.2
-
29
-
-
25444522923
-
Acid-induced activation of the urease promoters is mediated directly by the ArsRS two-component system of Helicobacter pylori
-
DOI 10.1128/IAI.73.10.6437-6445.2005
-
Pflock, M., S. Kennard, I. Delany, V. Scarlato, and D. Beier. 2005. Acid-induced activation of the urease promoters is mediated directly by the ArsRS two-component system of Helicobacter pylori. Infect. Immun. 73:6437-6445. (Pubitemid 41368805)
-
(2005)
Infection and Immunity
, vol.73
, Issue.10
, pp. 6437-6445
-
-
Pflock, M.1
Kennard, S.2
Delany, I.3
Scarlato, V.4
Beier, D.5
-
30
-
-
70350686719
-
The role of DNA shape in protein-DNA recognition
-
Rohs, R., W. S. M. A. Sosinsky, P. Liu, R. S. Mann, and B. Honig. 2009. The role of DNA shape in protein-DNA recognition. Nature 461:1248-1254.
-
(2009)
Nature
, vol.461
, pp. 1248-1254
-
-
Rohs, R.1
Sosinsky, W.S.M.A.2
Liu, P.3
Mann, R.S.4
Honig, B.5
-
31
-
-
0038718459
-
The gastric biology of Helicobacter pylori
-
Sachs, G., D. L. Weeks, K. Melchers, and D. R. Scott. 2003. The gastric biology of Helicobacter pylori. Annu. Rev. Physiol. 65:349-369.
-
(2003)
Annu. Rev. Physiol.
, vol.65
, pp. 349-369
-
-
Sachs, G.1
Weeks, D.L.2
Melchers, K.3
Scott, D.R.4
-
32
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
33
-
-
34548046005
-
Ribbon-helix-helix transcription factors: Variations on a theme
-
Schreiter, E. R., and C. L. Drennan. 2007. Ribbon-helix-helix transcription factors: variations on a theme. Nat. Rev. Microbiol. 5:710-720.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 710-720
-
-
Schreiter, E.R.1
Drennan, C.L.2
-
34
-
-
0141841775
-
Crystal structure of the nickel-responsive transcription factor NikR
-
Schreiter, E. R., et al. 2003. Crystal structure of the nickel-responsive transcription factor NikR. Nat. Struct. Biol. 10:794-799.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 794-799
-
-
Schreiter, E.R.1
-
35
-
-
33748773334
-
NikR-operator complex structure and the mechanism of repressor activation by metal ions
-
Schreiter, E. R., S. C. Wang, D. B. Zamble, and C. L. Drennan. 2006. NikR-operator complex structure and the mechanism of repressor activation by metal ions. Proc. Natl. Acad. Sci. U. S. A. 103:13676-13681.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 13676-13681
-
-
Schreiter, E.R.1
Wang, S.C.2
Zamble, D.B.3
Drennan, C.L.4
-
36
-
-
0030728522
-
Transcriptional analysis of the divergent cagAB genes encoded by the pathogenicity island of Helicobacter pylori
-
Spohn, G., D. Beier, R. Rappuoli, and V. Scarlato. 1997. Transcriptional analysis of the divergent cagAB genes encoded by the pathogenicity island of Helicobacter pylori. Mol. Microbiol. 26:361-372. (Pubitemid 27483684)
-
(1997)
Molecular Microbiology
, vol.26
, Issue.2
, pp. 361-372
-
-
Spohn, G.1
Beier, D.2
Rappuoli, R.3
Scarlato, V.4
-
37
-
-
77949424577
-
Characterization of NikR-responsive promoters of urease and metal transport genes of Helicobacter mustelae
-
Stoof, J., E. J. Kuipers, and A. H. van Vliet. 2010. Characterization of NikR-responsive promoters of urease and metal transport genes of Helicobacter mustelae. Biometals 23:145-159.
-
(2010)
Biometals
, vol.23
, pp. 145-159
-
-
Stoof, J.1
Kuipers, E.J.2
Van Vliet, A.H.3
-
38
-
-
0023042283
-
Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
-
Studier, F. W., and B. A. Moffatt. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113-130.
-
(1986)
J. Mol. Biol.
, vol.189
, pp. 113-130
-
-
Studier, F.W.1
Moffatt, B.A.2
-
39
-
-
5644252852
-
NikR-mediated regulation of Helicobacter pylori acid adaptation
-
van Vliet, A. H., F. D. Ernst, and J. G. Kusters. 2004. NikR-mediated regulation of Helicobacter pylori acid adaptation. Trends Microbiol. 12:489-494.
-
(2004)
Trends Microbiol.
, vol.12
, pp. 489-494
-
-
Van Vliet, A.H.1
Ernst, F.D.2
Kusters, J.G.3
-
40
-
-
0036263248
-
NikR mediates nickel-responsive transcriptional induction of urease expression in Helicobacter pylori
-
van Vliet, A. H., et al. 2002. NikR mediates nickel-responsive transcriptional induction of urease expression in Helicobacter pylori. Infect. Immun. 70:2846-2852.
-
(2002)
Infect. Immun.
, vol.70
, pp. 2846-2852
-
-
Van Vliet, A.H.1
-
41
-
-
0025132642
-
Chloramphenicol resistance in Campylobacter coli: Nucleotide sequence, expression, and cloning vector construction
-
Wang, Y., and D. E. Taylor. 1990. Chloramphenicol resistance in Campylobacter coli: nucleotide sequence, expression, and cloning vector construction. Gene 94:23-28.
-
(1990)
Gene
, vol.94
, pp. 23-28
-
-
Wang, Y.1
Taylor, D.E.2
-
42
-
-
77958063110
-
Holo-Ni(II) HpNikR is an asymmetric tetramer containing two different nickel-binding sites
-
West, A. L., et al. 2010. Holo-Ni(II) HpNikR is an asymmetric tetramer containing two different nickel-binding sites. J. Am. Chem. Soc. 132:14447-14456.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 14447-14456
-
-
West, A.L.1
-
43
-
-
32444446916
-
Nickel represses the synthesis of the nickel permease NixA of Helicobacter pylori
-
DOI 10.1128/JB.188.4.1245-1250.2006
-
Wolfram, L., E. Haas, and P. Bauerfeind. 2006. Nickel represses the synthesis of the nickel permease NixA of Helicobacter pylori. J. Bacteriol. 188:1245-1250. (Pubitemid 43228656)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.4
, pp. 1245-1250
-
-
Wolfram, L.1
Haas, E.2
Bauerfeind, P.3
-
44
-
-
0028860071
-
Analysis of expression of CagA and VacA virulence factors in 43 strains of Helicobacter pylori reveals that clinical isolates can be divided into two major types and that CagA is not necessary for expression of the vacuolating cytotoxin
-
Xiang, Z., et al. 1995. Analysis of expression of CagA and VacA virulence factors in 43 strains of Helicobacter pylori reveals that clinical isolates can be divided into two major types and that CagA is not necessary for expression of the vacuolating cytotoxin. Infect. Immun. 63:94-98.
-
(1995)
Infect. Immun.
, vol.63
, pp. 94-98
-
-
Xiang, Z.1
-
45
-
-
53549085686
-
High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter
-
Zambelli, B., et al. 2008. High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter. J. Mol. Biol. 383:1129-1143.
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 1129-1143
-
-
Zambelli, B.1
-
46
-
-
0035222715
-
Hydroxyl radical footprinting
-
Zaychikov, E., P. Schickor, L. Denissova, and H. Heumann. 2001. Hydroxyl radical footprinting. Methods Mol. Biol. 148:49-61.
-
(2001)
Methods Mol. Biol.
, vol.148
, pp. 49-61
-
-
Zaychikov, E.1
Schickor, P.2
Denissova, L.3
Heumann, H.4
|