-
1
-
-
57649207910
-
How do bacterial cells ensure that metalloproteins get the correct metal?
-
Waldron, K.J. and Robinson, N.J. (2009) How do bacterial cells ensure that metalloproteins get the correct metal? Nat. Rev. Microbiol., 7, 25-35.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 25-35
-
-
Waldron, K.J.1
Robinson, N.J.2
-
2
-
-
33645228520
-
Microbial nickel metalloregulation: NikRs for nickel ions
-
Dosanjh, N.S. and Michel, S.L. (2006) Microbial nickel metalloregulation: NikRs for nickel ions. Curr. Opin. Chem. Biol., 10, 123-130.
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, pp. 123-130
-
-
Dosanjh, N.S.1
Michel, S.L.2
-
3
-
-
0032932493
-
Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli
-
De Pina, K., Desjardin, V., Mandrand-Berthelot, M.A., Giordano, G. and Wu, L.F. (1999) Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli. J. Bacteriol., 181, 670-674.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 670-674
-
-
De Pina, K.1
Desjardin, V.2
Mandrand-Berthelot, M.A.3
Giordano, G.4
Wu, L.F.5
-
4
-
-
33846948997
-
Bacterial factors that mediate colonization of the stomach and virulence of Helicobacter pylori
-
Clyne, M., Dolan, B. and Reeves, E.P. (2007) Bacterial factors that mediate colonization of the stomach and virulence of Helicobacter pylori. FEMS Microbiol. Lett., 268, 135-143.
-
(2007)
FEMS Microbiol. Lett.
, vol.268
, pp. 135-143
-
-
Clyne, M.1
Dolan, B.2
Reeves, E.P.3
-
5
-
-
34250354686
-
Ten years after the first Helicobacter pylori genome: comparative and functional genomics provide new insights in the variability and adaptability of a persistent pathogen
-
de Reuse, H. and Bereswill, S. (2007) Ten years after the first Helicobacter pylori genome: comparative and functional genomics provide new insights in the variability and adaptability of a persistent pathogen. FEMS Immunol. Med. Microbiol., 50, 165-176.
-
(2007)
FEMS Immunol. Med. Microbiol.
, vol.50
, pp. 165-176
-
-
de Reuse, H.1
Bereswill, S.2
-
6
-
-
0036263248
-
NikR mediates nickel-responsive transcriptional induction of urease expression in Helicobacter pylori
-
van Vliet, A.H., Poppelaars, S.W., Davies, B.J., Stoof, J., Bereswill, S., Kist, M., Penn, C.W., Kuipers, E.J. and Kusters, J.G. (2002) NikR mediates nickel-responsive transcriptional induction of urease expression in Helicobacter pylori. Infect. Immun., 70, 2846-2852.
-
(2002)
Infect. Immun.
, vol.70
, pp. 2846-2852
-
-
van Vliet, A.H.1
Poppelaars, S.W.2
Davies, B.J.3
Stoof, J.4
Bereswill, S.5
Kist, M.6
Penn, C.W.7
Kuipers, E.J.8
Kusters, J.G.9
-
7
-
-
0042065267
-
Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori
-
Contreras, M., Thiberge, J.M., Mandrand-Berthelot, M.A. and Labigne, A. (2003) Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori. Mol. Microbiol., 49, 947-963.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 947-963
-
-
Contreras, M.1
Thiberge, J.M.2
Mandrand-Berthelot, M.A.3
Labigne, A.4
-
8
-
-
27744569940
-
The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori
-
Ernst, F.D., Kuipers, E.J., Heijens, A., Sarwari, R., Stoof, J., Penn, C.W., Kusters, J.G. and van Vliet, A.H. (2005) The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori. Infect. Immun., 73, 7252-7258.
-
(2005)
Infect. Immun.
, vol.73
, pp. 7252-7258
-
-
Ernst, F.D.1
Kuipers, E.J.2
Heijens, A.3
Sarwari, R.4
Stoof, J.5
Penn, C.W.6
Kusters, J.G.7
van Vliet, A.H.8
-
9
-
-
5644252852
-
NikR-mediated regulation of Helicobacter pylori acid adaptation
-
van Vliet, A.H., Ernst, F.D. and Kusters, J.G. (2004) NikR-mediated regulation of Helicobacter pylori acid adaptation. Trends Microbiol., 12, 489-494.
-
(2004)
Trends Microbiol
, vol.12
, pp. 489-494
-
-
van Vliet, A.H.1
Ernst, F.D.2
Kusters, J.G.3
-
10
-
-
27744481253
-
In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori
-
Delany, I., Ieva, R., Soragni, A., Hilleringmann, M., Rappuoli, R. and Scarlato, V. (2005) In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori. J. Bacteriol., 187, 7703-7715.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7703-7715
-
-
Delany, I.1
Ieva, R.2
Soragni, A.3
Hilleringmann, M.4
Rappuoli, R.5
Scarlato, V.6
-
11
-
-
59249087478
-
Helicobacter pylori NikR's interaction with DNA: a two-tiered mode of recognition
-
Dosanjh, N.S., West, A.L. and Michel, S.L.J. (2009) Helicobacter pylori NikR's interaction with DNA: a two-tiered mode of recognition. Biochemistry, 48, 527-536.
-
(2009)
Biochemistry
, vol.48
, pp. 527-536
-
-
Dosanjh, N.S.1
West, A.L.2
Michel, S.L.J.3
-
12
-
-
33845488317
-
NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512)
-
Ernst, F.D., Stoof, J., Horrevoets, W.M., Kuipers, E.J., Kusters, J.G. and van Vliet, A.H. (2006) NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512). Infect. Immun., 74, 6821-6828.
-
(2006)
Infect. Immun.
, vol.74
, pp. 6821-6828
-
-
Ernst, F.D.1
Stoof, J.2
Horrevoets, W.M.3
Kuipers, E.J.4
Kusters, J.G.5
van Vliet, A.H.6
-
13
-
-
53549085686
-
High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter
-
Zambelli, B., Danielli, A., Romagnoli, S., Neyroz, P., Ciurli, S. and Scarlato, V. (2008) High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter. J. Mol. Biol., 383, 1129-1143.
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 1129-1143
-
-
Zambelli, B.1
Danielli, A.2
Romagnoli, S.3
Neyroz, P.4
Ciurli, S.5
Scarlato, V.6
-
14
-
-
33746849786
-
Structural basis of the nickel response in Helicobacter pylori: crystal structures of HpNikR in Apo and nickel-bound states
-
Dian, C., Schauer, K., Kapp, U., McSweeney, S.M., Labigne, A. and Terradot, L. (2006) Structural basis of the nickel response in Helicobacter pylori: crystal structures of HpNikR in Apo and nickel-bound states. J. Mol. Biol., 361, 715-730.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 715-730
-
-
Dian, C.1
Schauer, K.2
Kapp, U.3
McSweeney, S.M.4
Labigne, A.5
Terradot, L.6
-
15
-
-
0141841775
-
Crystal structure of the nickel-responsive transcription factor NikR
-
Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T. and Drennan, C.L. (2003) Crystal structure of the nickel-responsive transcription factor NikR. Nat. Struct. Biol., 10, 794-799.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 794-799
-
-
Schreiter, E.R.1
Sintchak, M.D.2
Guo, Y.3
Chivers, P.T.4
Sauer, R.T.5
Drennan, C.L.6
-
16
-
-
17144395996
-
Structure of Pyrococcus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition
-
Chivers, P.T. and Tahirov, T.H. (2005) Structure of Pyrococcus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition. J. Mol. Biol., 348, 597-607.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 597-607
-
-
Chivers, P.T.1
Tahirov, T.H.2
-
17
-
-
33748773334
-
NikR-operator complex structure and the mechanism of repressor activation by metal ions
-
Schreiter, E.R., Wang, S.C., Zamble, D.B. and Drennan, C.L. (2006) NikR-operator complex structure and the mechanism of repressor activation by metal ions. Proc. Natl Acad. Sci. USA, 103, 13676-13681.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 13676-13681
-
-
Schreiter, E.R.1
Wang, S.C.2
Zamble, D.B.3
Drennan, C.L.4
-
18
-
-
33646138246
-
The metal- and DNA-binding activities of Helicobacter pylori NikR
-
Abraham, L.O., Li, Y. and Zamble, D.B. (2006) The metal- and DNA-binding activities of Helicobacter pylori NikR. J. Inorg. Biochem., 100, 1005-1014.
-
(2006)
J. Inorg. Biochem.
, vol.100
, pp. 1005-1014
-
-
Abraham, L.O.1
Li, Y.2
Zamble, D.B.3
-
19
-
-
33847646219
-
Characterization of the Helicobacter pylori NikR-P(ureA) DNA interaction: metal ion requirements and sequence specificity
-
Dosanjh, N.S., Hammerbacher, N.A. and Michel, S.L. (2007) Characterization of the Helicobacter pylori NikR-P(ureA) DNA interaction: metal ion requirements and sequence specificity. Biochemistry, 46, 2520-2529.
-
(2007)
Biochemistry
, vol.46
, pp. 2520-2529
-
-
Dosanjh, N.S.1
Hammerbacher, N.A.2
Michel, S.L.3
-
20
-
-
0034733505
-
Regulation of high affinity nickel uptake in bacteria. Ni2+-Dependent interaction of NikR with wild-type and mutant operator sites
-
Chivers, P.T. and Sauer, R.T. (2000) Regulation of high affinity nickel uptake in bacteria. Ni2+-Dependent interaction of NikR with wild-type and mutant operator sites. J. Biol. Chem., 275, 19735-19741.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19735-19741
-
-
Chivers, P.T.1
Sauer, R.T.2
-
21
-
-
41549149506
-
Sub-micromolar affinity of Escherichia coli NikR for Ni(II)
-
Diederix, R.E., Fauquant, C., Rodrigue, A., Mandrand-Berthelot, M.A. and Michaud-Soret, I. (2008) Sub-micromolar affinity of Escherichia coli NikR for Ni(II). Chem. Commun., 1813-1815.
-
(2008)
Chem. Commun.
, pp. 1813-1815
-
-
Diederix, R.E.1
Fauquant, C.2
Rodrigue, A.3
Mandrand-Berthelot, M.A.4
Michaud-Soret, I.5
-
22
-
-
3543056937
-
Selectivity of metal binding and metal-induced stability of Escherichia coli NikR
-
Wang, S.C., Dias, A.V., Bloom, S.L. and Zamble, D.B. (2004) Selectivity of metal binding and metal-induced stability of Escherichia coli NikR. Biochemistry, 43, 10018-10028.
-
(2004)
Biochemistry
, vol.43
, pp. 10018-10028
-
-
Wang, S.C.1
Dias, A.V.2
Bloom, S.L.3
Zamble, D.B.4
-
23
-
-
34548301813
-
The Ni2+ binding properties of Helicobacter pylori NikR
-
Zambelli, B., Bellucci, M., Danielli, A., Scarlato, V. and Ciurli, S. (2007) The Ni2+ binding properties of Helicobacter pylori NikR. Chem. Commun., 3649-3651.
-
(2007)
Chem. Commun.
, pp. 3649-3651
-
-
Zambelli, B.1
Bellucci, M.2
Danielli, A.3
Scarlato, V.4
Ciurli, S.5
-
24
-
-
3543072246
-
Metal-selective DNA-binding response of Escherichia coli NikR
-
Bloom, S.L. and Zamble, D.B. (2004) Metal-selective DNA-binding response of Escherichia coli NikR. Biochemistry, 43, 10029-10038.
-
(2004)
Biochemistry
, vol.43
, pp. 10029-10038
-
-
Bloom, S.L.1
Zamble, D.B.2
-
25
-
-
0036774881
-
NikR repressor: high-affinity nickel binding to the C-terminal domain regulates binding to operator DNA
-
Chivers, P.T. and Sauer, R.T. (2002) NikR repressor: high-affinity nickel binding to the C-terminal domain regulates binding to operator DNA. Chem. Biol., 9, 1141-1148.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1141-1148
-
-
Chivers, P.T.1
Sauer, R.T.2
-
26
-
-
39649107339
-
Structural basis of the metal specificity for nickel regulatory protein NikR
-
Phillips, C.M., Schreiter, E.R., Guo, Y., Wang, S.C., Zamble, D.B. and Drennan, C.L. (2008) Structural basis of the metal specificity for nickel regulatory protein NikR. Biochemistry, 47, 1938-1946.
-
(2008)
Biochemistry
, vol.47
, pp. 1938-1946
-
-
Phillips, C.M.1
Schreiter, E.R.2
Guo, Y.3
Wang, S.C.4
Zamble, D.B.5
Drennan, C.L.6
-
27
-
-
67651226891
-
Physical basis of metal-binding specificity in Escherichia coli NikR
-
Phillips, C.M., Nerenberg, P.S., Drennan, C.L. and Stultz, C.M. (2009) Physical basis of metal-binding specificity in Escherichia coli NikR. J. Am. Chem. Soc., 131, 10220-10228.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 10220-10228
-
-
Phillips, C.M.1
Nerenberg, P.S.2
Drennan, C.L.3
Stultz, C.M.4
-
28
-
-
34547130605
-
The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA binding
-
Benanti, E.L. and Chivers, P.T. (2007) The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA binding. J. Biol. Chem., 282, 20365-20375.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20365-20375
-
-
Benanti, E.L.1
Chivers, P.T.2
-
29
-
-
64849097266
-
The pH-responsive DNA-binding activity of Helicobacter pylori NikR
-
Li, Y. and Zamble, D. (2009) The pH-responsive DNA-binding activity of Helicobacter pylori NikR. Biochemistry, 48, 2486-2496.
-
(2009)
Biochemistry
, vol.48
, pp. 2486-2496
-
-
Li, Y.1
Zamble, D.2
-
30
-
-
66149112914
-
Growth phase and metal-dependent transcriptional regulation of the fecA genes in Helicobacter pylori
-
Danielli, A., Romagnoli, S., Roncarati, D., Costantino, L., Delany, I. and Scarlato, V. (2009) Growth phase and metal-dependent transcriptional regulation of the fecA genes in Helicobacter pylori. J. Bacteriol., 191, 3717-3725.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3717-3725
-
-
Danielli, A.1
Romagnoli, S.2
Roncarati, D.3
Costantino, L.4
Delany, I.5
Scarlato, V.6
-
31
-
-
0027229928
-
Gene splicing by overlap extension
-
Horton, R.M., Ho, S.N., Pullen, J.K., Hunt, H.D., Cai, Z. and Pease, L.R. (1993) Gene splicing by overlap extension. Methods Enzymol., 217, 270-279.
-
(1993)
Methods Enzymol.
, vol.217
, pp. 270-279
-
-
Horton, R.M.1
Ho, S.N.2
Pullen, J.K.3
Hunt, H.D.4
Cai, Z.5
Pease, L.R.6
-
32
-
-
33750970531
-
pH dependent Ni(II) binding and aggregation of Escherichia coli and Helicobacter pylori NikR
-
Fauquant, C., Diederix, R.E., Rodrigue, A., Dian, C., Kapp, U., Terradot, L., Mandrand-Berthelot, M.A. and Michaud-Soret, I. (2006) pH dependent Ni(II) binding and aggregation of Escherichia coli and Helicobacter pylori NikR. Biochimie, 88, 1693-1705.
-
(2006)
Biochimie
, vol.88
, pp. 1693-1705
-
-
Fauquant, C.1
Diederix, R.E.2
Rodrigue, A.3
Dian, C.4
Kapp, U.5
Terradot, L.6
Mandrand-Berthelot, M.A.7
Michaud-Soret, I.8
-
33
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr., 26, 795-800.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
34
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
35
-
-
24644451703
-
A robust bulk-solvent correction and anisotropic scaling procedure
-
Afonine, P.V., Grosse-Kunstleve, R.W. and Adams, P.D. (2005) A robust bulk-solvent correction and anisotropic scaling procedure. Acta Crystallogr. D Biol. Crystallogr., 61, 850-855.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr.
, vol.61
, pp. 850-855
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
-
37
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
CCP4
-
CCP4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr., 50, 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
38
-
-
0031911053
-
Evidence for specific secretion rather than autolysis in the release of some Helicobacter pylori proteins
-
Vanet, A. and Labigne, A. (1998) Evidence for specific secretion rather than autolysis in the release of some Helicobacter pylori proteins. Infect. Immun., 66, 1023-1027.
-
(1998)
Infect. Immun.
, vol.66
, pp. 1023-1027
-
-
Vanet, A.1
Labigne, A.2
-
39
-
-
0141484613
-
PRIMUS: a Windows PC-based system for small-angle scattering data analysis
-
Konarev, P.V., Volkov, V.V., Sokolova, A.V., Koch, M.H.J. and Svergun, D.I. (2003) PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr., 36, 1277-1282.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
40
-
-
0029185933
-
CRYSOL - a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun, D., Barberato, C. and Koch, M.H.J. (1995) CRYSOL - a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr., 28, 768-773.
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
41
-
-
67649229862
-
A ZnS4 structural zinc site in the Helicobacter pylori ferric uptake regulator
-
Vitale, S., Fauquant, C., Lascoux, D., Schauer, K., Saint-Pierre, C. and Michaud-Soret, I. (2009) A ZnS4 structural zinc site in the Helicobacter pylori ferric uptake regulator. Biochemistry, 48, 5582-5591.
-
(2009)
Biochemistry
, vol.48
, pp. 5582-5591
-
-
Vitale, S.1
Fauquant, C.2
Lascoux, D.3
Schauer, K.4
Saint-Pierre, C.5
Michaud-Soret, I.6
-
42
-
-
42649130377
-
Molecular dynamics simulation of the Escherichia coli NikR protein: equilibrium conformational fluctuations reveal interdomain allosteric communication pathways
-
Bradley, M.J., Chivers, P.T. and Baker, N.A. (2008) Molecular dynamics simulation of the Escherichia coli NikR protein: equilibrium conformational fluctuations reveal interdomain allosteric communication pathways. J. Mol. Biol., 378, 1155-1173.
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 1155-1173
-
-
Bradley, M.J.1
Chivers, P.T.2
Baker, N.A.3
-
43
-
-
33845944628
-
The ACT domain: a small molecule binding domain and its role as a common regulatory element
-
Grant, G.A. (2006) The ACT domain: a small molecule binding domain and its role as a common regulatory element. J. Biol. Chem., 281, 33825-33829.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 33825-33829
-
-
Grant, G.A.1
-
44
-
-
66349125424
-
The "metallo-specific" response of proteins: a perspective based on the Escherichia coli transcriptional regulator NikR
-
Wang, S.C., Dias, A.V. and Zamble, D.B. (2009) The "metallo-specific" response of proteins: a perspective based on the Escherichia coli transcriptional regulator NikR. Dalton Trans., 2459-2466.
-
(2009)
Dalton Trans.
, pp. 2459-2466
-
-
Wang, S.C.1
Dias, A.V.2
Zamble, D.B.3
-
45
-
-
0027741075
-
Biological monitoring of nickel in humans
-
Sunderman, F.W. Jr (1993) Biological monitoring of nickel in humans. Scand. J. Work Environ. Health, 19(Suppl. 1), 34-38.
-
(1993)
Scand. J. Work Environ. Health
, vol.19
, Issue.SUPPL. 1
, pp. 34-38
-
-
Sunderman F.W., Jr.1
|