Vibrational circular dichroism as a probe of fibrillogenesis: The origin of the anomalous intensity enhancement of amyloid-like fibrils

Journal of the American Chemical Society

Volumn 133, Issue 4, 2011, Pages 1066-1076

  Measey, Thomas J ^a   Schweitzer Stenner, Reinhard ^a  

^a DREXEL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE-RICH PEPTIDES; AMIDE I; AMIDE I BANDS; AMYLOID FIBRIL; AMYLOID-LIKE FIBRIL; CHIRAL STRUCTURES; EXCITONIC COUPLING; EXPERIMENTAL SPECTRA; FIBRIL FORMATION; FIBRILLOGENESIS; HELICAL TWIST; HUMAN PATHOLOGIES; INTENSITY ENHANCEMENT; MOLECULAR ARCHITECTURE; N-TERMINALS; PEPTIDE FRAGMENTS; PROTEIN AGGREGATION; SECONDARY STRUCTURES; SUPRAMOLECULAR STRUCTURE; TRANSITION DIPOLE MOMENTS; VIBRATIONAL CIRCULAR DICHROISM; VIBRATIONAL CIRCULAR DICHROISM SPECTROSCOPY; VIBRATIONAL COUPLINGS; YEAST PRIONS;

AMIDES; AMINO ACIDS; CIRCULAR DICHROISM SPECTROSCOPY; DICHROISM; PEPTIDES; PROBES; STEREOCHEMISTRY;

GLYCOPROTEINS;

ALANINE; AMYLOID; GLYCYLASPARAGINYLASPARAGINYLGLUTAMINYLGLUTAMINYLASPARAGINYLTYROSINE; PEPTIDE; UNCLASSIFIED DRUG;

ARTICLE; BETA SHEET; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; DIPOLE; KINETICS; OSCILLATOR; PROTEIN AGGREGATION; SIGNAL DETECTION; SIMULATION; VIBRATION;

AMIDES; AMINO ACID SEQUENCE; AMYLOID; CIRCULAR DICHROISM; PEPTIDES; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY; SOLUTIONS; SPECTROPHOTOMETRY, INFRARED; VIBRATION;

EID: 79851507329     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja1089827     Document Type: Article

References (54)

1. Chiti, F.; Dobson, C. M. Annu. Rev. Biochem. 2006, 75, 333.
2. Dobson, C. M. Trends Biochem. Sci. 1999, 24, 329.
3. Dobson, C. M. Nature 2003, 426, 884.
4. Yokoi, H.; Kinoshita, T.; Zhang, S. Proc. Natl. Acad. Sci. USA. 2005, 102, 8414.
5. Hamley, I. W. Angew. Chem.. Int. Ed. 2007, 46, 8128.
6. Zhang, S.; Altman, M. React. Fund. Polym. 1999, 41, 91.
7. Gazit, E. Angew. Chem., Int. Ed. 2002, 41, 257.
8. Modler, A. J.; Gast, K.; Lutsch, G.; Damaschun, G. J. Mol. Biol. 2003, 325, 135.
9. LeVine, H., III. Protein Sci. 1993, 2, 404.
10. Wood, S. J.; Maleeff, B.; Hart, T.; Wetzel, R. J. Mol. Biol. 1996, 256, 870.
11. Jarrett, J. T.; Lansbury, P. T., Jr. Biochemistry 1992, 31, 12345.
12. Wood, S. J.; Chan, W.; Wetzel, R. Chem. Biol. 1996, 3, 949.
13. Walsh, D. M.; Lomakin, A.; Benedek, G. B.; Condron, M. M.; Teplow, D. B. J. Biol. Chem. 1997, 272, 22364.
14. Harper, J. D.; Wong, S. S.; Lieber, C. M.; Lansbury, P. T., Jr. Chem. Biol. 1997. 4. 119.
15. Makin, O. S.; Serpell, L. C. J. Mol. Biol. 2004, 335, 1279.
16. Goldsbury, C. S.; Cooper, G. J. S.; Goldie, K. N.; Müller, S. A.; Saafi, E. L.; Gruijters, W. T. M.; Misur, M. P.; Engel, A.; Aebi, U.; Kistler, I. J. Struct. Biol 1997, 119, 17.
17. Zandomeneghi, G.; Krebs, M. R. H.; McCammon, M. G.; Fändrich, M. Protein Sci. 2004, 13, 3314.
18. Shashilov, V. A.; Lednev, I. K. J. Am. Chem. Soc. 2008, 130, 309.
19. Popova, L. A.; Kodali, R.; Wetzel, R.; Lednev, I. K. J. Am. Chem. Soc. 2010, 132, 6324.
20. Ma, S.; Cao, X.; Mak, M.; Sadik, A.; Walkner, C.; Freedman, T. B.; Lednev, I. K.; Dukor, R. K.; Nafie, L. A J. Am. Chem. Soc. 2007, 129, 12364.
21. Measey, T. J.; Smith, K. B.; Decatur, S. M.; Zhao, L.; Yang, G.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 2009, 131, 18218.
22. Kurouski, D.; Lombardi, R. A.; Dukor, R. K.; Lednev, I. K.; Nafie, L. A Chem. Commun. 2010, 46, 7154.
23. Dzwolak, W.; Loksztejn, A.; Galinska-Rakoczy, A.; Adachi, R.; Goto, Y.; Rupnicki, L. J. Am. Chem. Soc. 2007, 129, 7517.
24. Rubin, N.; Perugia, E.; Goldschmidt, M.; Fridkin, M.; Addadi, L. J. Am. Chem. Soc. 2008, 130, 4602.
25. Hagarman, A.; Measey, T. J.; Mathieu, D.; Schwalbe, H.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 2010, 132, 540.
26. Schweitzer-Stenner, R. J. Phys. Chem. B 2004, 108, 16965.
27. Eker, F.; Griebenow, K.; Cao, X.; Nafie, L. A.; Schweitzer-Stenner, R. Proc. Natl. Acad. Sci. USA. 2004, 101, 10054.
28. Schweitzer-Stenner, R.; Measey, T. J. Proc. Natl. Acad. Sci. U. S. A 2007, 104, 6649.
29. Schweitzer-Stenner, R.; Measey, T. J. Spectroscopy 2010, 24, 25.
30. Krimm, S.; Bandekar, K. Adv. Protein Chem. 1986, 38, 181.
31. Schweitzer-Stenner, R. J. Phys. Chem. B 2009, 113, 2922.
32. Schweitzer-Stenner, R. Vib. Spectrosc. 2006, 42, 98.
33. Lee, C.; Cho, M. J. Phys. Chem. B 2004, 108, 20397.
34. Barth, A. Biochim. Biophys. Acta 2007, 1767, 1073.
35. Measey, T.; Schweitzer-Stenner, R. Chem. Phys. Lett. 2005, 408, 123.
36. Zako, T.; Sakono, M.; Hasimoto, N.; Ihara, M.; Maeda, M. Biovhvs. J 2009, 96, 3331.
37. Balbirnie, M.; Grothe, R.; Eisenberg, D. S. Proc. Natl. Acad. Sci. U. S. A. 2001, 98, 2375.
38. Nelson, R.; Sawaya, M. R.; Balbirnie, M.; Madsen, A. Ø.; Riekel, C.; Grothe, R.; Eisenberg, D. Nature 2005, 435, 773.
39. Reddy, A. S.; Chopra, M.; de Pablo, J. J. Biophys. J. 2010, 98, 1038.
40. Measey, T.; Hag arman, A.; Eker, F.; Griebenow, K.; Schweitzer-Stenner, R. J. Phys. Chem. B 2005, 109, 8195.
41. Venyaminov, S. Y.; Kalnin, N. N. Biopolymers 1990, 30, 1243.
42. Meng, X.; Munishkina, L. A.; Fink, A L.; Uversky, V. N. Biochemistry 2009, 48, 8206.
43. Caughey, B.; Lansbury, P. T., Jr. Annu. Rev. Neurosci. 2003, 26, 267.
44. Bitan, G.; Kirkitadze, M. D.; Lomakin, A.; Vollers, S. S.; Benedek, G. B.; Teplow, D. B. Proc. Natl. Acad. Sci. U. S. A. 2002, 100, 330.
45. Perutz, M. F.; Windle, A H. Nature 2001, 412, 143.
46. Keiderling, T. A. Nature 1986, 322, 851.
47. Measey, T. J.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 2006, 128, 13324.
48. Sawaya, M. R.; Samashivan, S.; Nelson, R.; Ivanova, M. I.; Sievers, S. A.; Apostol, M. I.; Thompson, M. J.; Balbirnie, M.; Wiltzius, J. J. W.; Farlane, H. T.; Madsen, A Ø.; Riekel, C.; Eisenberg, D. Nature 2007, 447, 453.
49. Bour, P.; Keiderling, T. A. J. Am. Chem. Soc. 1993, 115, 9602.
50. Keiderling, T. A. Cum Opin. Chem. Biol. 2002, 6, 682.
51. Jiménez, J. L.; Nettleton, E. J.; Bouchard, M.; Robinson, C. V.; Dobson, C. M.; Saibil, H. R. Proc. Natl. Acad. Sci. USA. 2002, 99, 9196.
52. Decatur, S. M.; Anionic, J. J. Am. Chem. Soc. 1999, 121, 11914.
53. Marshall, K. E.; Hicks, M. R.; Williams, T. L.; Hoffman, S. V.; Rodger, A.; Dafforn, T. R.; Serpell, L. C. Biovhvs. J. 2010, 98, 330.
54. van der Wel, P. C. A.; Lewandowski, J. R; Griffin, R. G. J. Am. Chem. Soc. 2007. 129. 5117.