Side chain dependence of intensity and wavenumber position of amide I′ in IR and visible raman spectra of XA and AX dipeptides

Journal of Physical Chemistry B

Volumn 109, Issue 16, 2005, Pages 8195-8205

  Measey, Thomas ^a   Hagarman, Andrew ^a   Eker, Fatma ^b   Griebenow, Kai ^b   Schweitzer Stenner, Reinhard ^a  

^a DREXEL UNIVERSITY   (United States)

^b UNIVERSITY OF PUERTO RICO   (Puerto Rico)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPIC RAMAN SPECTROSCOPY; DELOCALIZATION; SIDE CHAIN DEPENDENCE; WAVENUMBER POSITION;

AMINO ACIDS; ANISOTROPY; POLYPEPTIDES; PROBABILITY DENSITY FUNCTION; PROTEINS; RAMAN SCATTERING; WAVE EFFECTS;

INFRARED RADIATION;

AMIDE; AMINO ACID; DIPEPTIDE;

ARTICLE; CHEMISTRY; INFRARED SPECTROPHOTOMETRY; RAMAN SPECTROMETRY;

AMIDES; AMINO ACIDS; DIPEPTIDES; SPECTROPHOTOMETRY, INFRARED; SPECTRUM ANALYSIS, RAMAN;

EID: 18444416036     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp045762l     Document Type: Article

References (45)

1. Surewicz, W. K.; Mantsch, H. H. In Spectroscopic Methods for Determining Protein Structure in Solution; Havel, H. A., Ed; VCH: New York, 1996; p 135.
2. Infrared and Raman Spectroscopy of Biological Materials; Gremlich, H.-U., Yan, B., Eds.; Marcel Dekker: New York, 2000.
3. Krimm, S.; Bandekar, J. Adv. Protein Chem. 1986, 38, 181.
4. Ham, S.; Cha, S.; Choi, J.-H.; Cho, M. J. Chem. Phys. 2003, 119, 1451.
5. Torii, H.; Tasumi, M. J. Raman Spectrosc. 1998, 29, 81.
6. Choi, S.-J.; Ham, S.; Cho, M. J. Phys. Chem. B 2003, 107, 9132-9138.
7. Woutersen, S.; Hamm, P. J. Phys. Chem B 2000, 104, 11316.
8. Woutersen, S.; Hamm, P. J. Chem. Phys. 2001, 123, 9628.
9. Paul, C.; Wang, J.; Wimley, W. C.; Hochstrasser, R. H.; Axelsen, P. H. J. Am. Chem. Soc. 2004, 126, 5843.
10. Fang, C.; Wang, J.; Kim, Y. S.; Charnley, A. K.; Barber-Armstron, W.; Smith, A. A., III; Decatur, S. M.; Hochstrasser, R. M. J. Phys. Chem. B 2004, 108, 10415.
11. Kubelka, J.; Keiderling, T. J. Am. Chem. Soc. 2001, 123, 6142.
12. Bour, P.; Kubelka, J.; Keiderling, T. Biopolymers 2002, 65, 45.
13. Bour, P.; Keiderling, T. A. J. Mol. Struct. 2004, 675, 95.
14. Eker, F.; Cao, X.; Nafie, L.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 2002, 124, 14330.
15. Schweitzer-Stenner, R.; Eker, F.; Griebenow, K.; Cao, X.; Nafie, L. J. Am. Chem. Soc. 2004, 126, 2768.
16. Eker, F.; Griebenow, K.; Schweitzer-Stenner, R. Biochemistry 2004, 43, 6893.
17. Huang, Q.; Schweitzer-Stenner, R. J. Raman Spectrosc. 2004, 35, 586.
18. Schweitzer-Stenner, R. J. Phys. Chem. B 2004, 108, 16965.
19. Choi, J.-H.; Ham, S.; Cho, M. J. Phys. Chem. 2003, 107, 9132.
20. Ham, S.; Hahn, S.; Lee, C.; Kim, T.-K.; Kwak, K.; Cho, M. J. Phys. Chem. B 2004, 108, 9333.
21. Chen, X. G.; Schweitzer-Stenner, R.; Asher, S. A.; Mirkin, N.; Krimm, S. J. Phys. Chem. 1995, 99, 3074.
22. Sieler, G.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 1997, 119, 1720.
23. Nafie, L. A.; Dukor, R. K.; Freedman, T. B. Vibrational Circular Dichroism. Handbook of Vibrational Spectroscopy, Chalmers, J. M., Griffiths, P. R., Eds.; John Wiley and Sons, Ltd.: Chichester, 2002.
24. Schweitzer-Stenner, R. J. Raman Spectrosc. 2001, 32, 711.
25. Schweitzer-Stenner, R. Biophys. J. 2002, 83, 523-532.
26. Chen, X.; Li, P.; Holtz, J.; Chi, Z.; Pajcini, V.; Asher, S.; Kelly, L. J. Am. Chem. Soc. 1996, 118, 9705-9715.
27. Pajcini, V.; Chen, X. G.; Bormett, R.; Geib, S. J.; Li, P.; Asher, S. A.; Lidiak, E. G. J. Am. Chem. Soc. 1996, 118, 9716.
28. Schweitzer-Stenner, R.; Eker, F.; Perez, A.; Griebenow, K.; Cao, X.; Nafie, L. Biopolymers (Peptide Science) 2003, 71, 558-568.
29. Glasoe, P. K.; Long, F. A. J. Phys. Chem. 1960, 64, 188-193.
30. Jentzen, W.; Unger, E.; Karvounis, G.; Shelnutt, J. A.; Dreybrodt, W.; Schweitzer-Stenner, R. J. Phys. Chem. 1996, 100, 14184-14191.
31. Throughout this paper, the terms "cationic", "zwitterionic", and "anionic" refer exclusively to the terminal charges.
32. Sieler, G.; Schweitzer-Stenner, R.; Holtz, J. S. W.; Pajcini, V.; Asher, S. A. J. Phys. Chem. B 1999, 103, 372.
33. Kwac, K.; Lee, H.; Cho, M. J. Chem. Phys. 2004, 120, 1477.
34. Venyaminov, S. Y.; Kalinin, N. N. Biopolymers 1990, 30, 1243.
35. Chirgadze, N. Y.; Fedorov, O. V.; Trushina, N. P. Biopolymers 1975, 14, 679.
36. Schweitzer-Stenner, R.; Eker, F.; Huang, Q.; Griebenow, K. H.; Mosz, P.; Kozlowski, P. M. J. Phys. Chem. B 2002, 106, 4294.
37. Kwac, K.; Cho, M. J. Chem. Phys. 2003, 119, 2247.
38. Kyte, J.; Doolittle, R. F. J. Mol. Biol. 1982, 157, 105-132.
39. Hahn, S.; Lee, H.; Cho, M. J. Chem. Phys. 2004, 121, 1849-1865.
40. Han, W.-G.; Jalkanen, K. J.; Elstner, M.; Suhai, S. J. Phys. Chem. B 1998, 102, 2587.
41. Eker, F.; Griebenow, K.; Cao, X.; Nafie, L. A.; Schweitzer-Stenner, R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10054.
42. Schweitzer-Stenner, R.; Sieler, G.; Christiansen, H. Asian J. Phys. 1998, 2, 287.
43. Asher, S. A.; Ianoul, A.; Nix, G.; Boyden, M. N.; Karnoup, A.; Diem, M.; Schweitzer-Stenner, R. J. Am. Chem. Soc. 2001, 123, 11775.
44. Brauner, J. W.; Flach, C.; Mendelsohn, R. J. Am. Chem. Soc. 2005, 127, 100.
45. Moffit, W. Proc. Natl. Acad. Sci. U.S.A. 1956, 42, 736.