메뉴 건너뛰기




Volumn 5, Issue 7, 2010, Pages

MicroRNAome of porcine pre- and postnatal development

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; MICRORNA; PROTEIN LET 7; SHORT HAIRPIN RNA; UNCLASSIFIED DRUG;

EID: 77955388999     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0011541     Document Type: Article
Times cited : (125)

References (51)
  • 1
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew RW, Sontheimer EJ (2009) Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 2
    • 61849137222 scopus 로고    scopus 로고
    • Many roads to maturity: MicroRNA biogenesis pathways and their regulation
    • Winter J, Jung S, Keller S, Gregory RI, Diederichs S (2009) Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 11: 228-234.
    • (2009) Nat Cell Biol , vol.11 , pp. 228-234
    • Winter, J.1    Jung, S.2    Keller, S.3    Gregory, R.I.4    Diederichs, S.5
  • 3
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 5
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 6
  • 8
    • 33847066774 scopus 로고    scopus 로고
    • Swine genome science comes of age
    • Jiang Z, Rothschild MF (2007) Swine genome science comes of age. Int J Biol Sci 3: 129-131.
    • (2007) Int J Biol Sci , vol.3 , pp. 129-131
    • Jiang, Z.1    Rothschild, M.F.2
  • 9
    • 33646523847 scopus 로고    scopus 로고
    • Commercial pigs: An untapped resource for human obesity research?
    • Rocha D, Plastow G (2006) Commercial pigs: an untapped resource for human obesity research? Drug Discov Today 11: 475-477.
    • (2006) Drug Discov Today , vol.11 , pp. 475-477
    • Rocha, D.1    Plastow, G.2
  • 10
    • 33847068799 scopus 로고    scopus 로고
    • Advances in swine biomedical model genomics
    • Lunney JK (2007) Advances in swine biomedical model genomics. Int J Biol Sci 3: 179-184.
    • (2007) Int J Biol Sci , vol.3 , pp. 179-184
    • Lunney, J.K.1
  • 12
    • 33847755965 scopus 로고    scopus 로고
    • New porcine microRNA genes found by homology search
    • Kim HJ, Cui XS, Kim EJ, Kim WJ, Kim NH (2006) New porcine microRNA genes found by homology search. Genome 49: 1283-1286.
    • (2006) Genome , vol.49 , pp. 1283-1286
    • Kim, H.J.1    Cui, X.S.2    Kim, E.J.3    Kim, W.J.4    Kim, N.H.5
  • 13
    • 56949102405 scopus 로고    scopus 로고
    • Identification and characterization of new microRNAs from pig
    • Kim J, Cho IS, Hong JS, Choi YK, Kim H, et al. (2008) Identification and characterization of new microRNAs from pig. Mamm Genome 19: 570-580.
    • (2008) Mamm Genome , vol.19 , pp. 570-580
    • Kim, J.1    Cho, I.S.2    Hong, J.S.3    Choi, Y.K.4    Kim, H.5
  • 15
    • 23444460778 scopus 로고    scopus 로고
    • Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
    • doi: 10.1186/1471-2164-6-70
    • Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, et al. (2005) Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 6: 70. doi: 10.1186/1471-2164-6-70.
    • (2005) BMC Genomics , vol.6 , pp. 70
    • Wernersson, R.1    Schierup, M.H.2    Jorgensen, F.G.3    Gorodkin, J.4    Panitz, F.5
  • 16
    • 33847078504 scopus 로고    scopus 로고
    • Identifying the future needs for long-term USDA efforts in agricultural animal genomics
    • Green RD, Qureshi MA, Long JA, Burfening PJ, Hamernik DL (2007) Identifying the future needs for long-term USDA efforts in agricultural animal genomics. Int J Biol Sci 3: 185-191.
    • (2007) Int J Biol Sci , vol.3 , pp. 185-191
    • Green, R.D.1    Qureshi, M.A.2    Long, J.A.3    Burfening, P.J.4    Hamernik, D.L.5
  • 17
    • 20444420474 scopus 로고    scopus 로고
    • Swine Genome Sequencing Consortium (SGSC): A strategic roadmap for sequencing the pig genome
    • Schook LB, Beever JE, Rogers J, Humphray S, Archibald A, et al. (2005) Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome. Comp Funct Genomics 6: 251-255.
    • (2005) Comp Funct Genomics , vol.6 , pp. 251-255
    • Schook, L.B.1    Beever, J.E.2    Rogers, J.3    Humphray, S.4    Archibald, A.5
  • 18
    • 33847317017 scopus 로고    scopus 로고
    • Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
    • Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG, et al. (2007) Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 315: 1137-1140.
    • (2007) Science , vol.315 , pp. 1137-1140
    • Kawahara, Y.1    Zinshteyn, B.2    Sethupathy, P.3    Iizasa, H.4    Hatzigeorgiou, A.G.5
  • 19
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian microRNA expression atlas based on small RNA library sequencing
    • Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
    • (2007) Cell , vol.129 , pp. 1401-1414
    • Landgraf, P.1    Rusu, M.2    Sheridan, R.3    Sewer, A.4    Iovino, N.5
  • 20
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran V, Chen X (2008) Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321: 1490-1492.
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 21
    • 70349453924 scopus 로고    scopus 로고
    • Active turnover modulates mature microRNA activity in Caenorhabditis elegans
    • Chatterjee S, Grosshans H (2009) Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461: 546-549.
    • (2009) Nature , vol.461 , pp. 546-549
    • Chatterjee, S.1    Grosshans, H.2
  • 22
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964.
    • (2008) Genome Res , vol.18 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5
  • 23
    • 55549129277 scopus 로고    scopus 로고
    • In-depth characterization of the microRNA transcriptome in a leukemia progression model
    • Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Res 18: 1787-1797.
    • (2008) Genome Res , vol.18 , pp. 1787-1797
    • Kuchenbauer, F.1    Morin, R.D.2    Argiropoulos, B.3    Petriv, O.I.4    Griffith, M.5
  • 24
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
    • (2008) Genome Res , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5
  • 25
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, et al. (2008) Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 18: 571-584.
    • (2008) Genome Res , vol.18 , pp. 571-584
    • Morin, R.D.1    Aksay, G.2    Dolgosheina, E.3    Ebhardt, H.A.4    Magrini, V.5
  • 26
    • 65849172363 scopus 로고    scopus 로고
    • Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
    • Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, et al. (2009) Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 37: 2461-2470.
    • (2009) Nucleic Acids Res , vol.37 , pp. 2461-2470
    • Ebhardt, H.A.1    Tsang, H.H.2    Dai, D.C.3    Liu, Y.4    Bostan, B.5
  • 27
    • 38049156025 scopus 로고    scopus 로고
    • An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133
    • Liu N, Williams AH, Kim Y, McAnally J, Bezprozvannaya S, et al. (2007) An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133. Proc Natl Acad Sci U S A 104: 20844-20849.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 20844-20849
    • Liu, N.1    Williams, A.H.2    Kim, Y.3    McAnally, J.4    Bezprozvannaya, S.5
  • 28
    • 31744432337 scopus 로고    scopus 로고
    • The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
    • Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, et al. (2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38: 228-233.
    • (2006) Nat Genet , vol.38 , pp. 228-233
    • Chen, J.F.1    Mandel, E.M.2    Thomson, J.M.3    Wu, Q.4    Callis, T.E.5
  • 29
    • 33645075443 scopus 로고    scopus 로고
    • MiR-122 regulation of lipid metabolism revealed by in vivo antisense targeting
    • Esau C, Davis S, Murray SF, Yu XX, Pandey SK, et al. (2006) miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab 3: 87-98.
    • (2006) Cell Metab , vol.3 , pp. 87-98
    • Esau, C.1    Davis, S.2    Murray, S.F.3    Yu, X.X.4    Pandey, S.K.5
  • 30
    • 66149167562 scopus 로고    scopus 로고
    • Integration of microRNA miR-122 in hepatic circadian gene expression
    • Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, et al. (2009) Integration of microRNA miR-122 in hepatic circadian gene expression. Genes Dev 23: 1313-1326.
    • (2009) Genes Dev , vol.23 , pp. 1313-1326
    • Gatfield, D.1    le Martelot, G.2    Vejnar, C.E.3    Gerlach, D.4    Schaad, O.5
  • 31
    • 0036306331 scopus 로고    scopus 로고
    • Regulatory phases of early liver development: Paradigms of organogenesis
    • Zaret KS (2002) Regulatory phases of early liver development: paradigms of organogenesis. Nat Rev Genet 3: 499-512.
    • (2002) Nat Rev Genet , vol.3 , pp. 499-512
    • Zaret, K.S.1
  • 32
  • 33
    • 18044377963 scopus 로고    scopus 로고
    • Principles of microRNAtarget recognition
    • doi: 10.1371/journal.pbio.0030085
    • Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of microRNAtarget recognition. PLoS Biol 3: e85. doi: 10.1371/journal.pbio.0030085.
    • (2005) PLoS Biol , vol.3
    • Brennecke, J.1    Stark, A.2    Russell, R.B.3    Cohen, S.M.4
  • 34
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5
  • 35
    • 68149137670 scopus 로고    scopus 로고
    • Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    • doi: 10.1371/journal.pone.0006349
    • Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, et al. (2009) Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection. PLoS One 4: e6349. doi: 10.1371/journal.pone.0006349.
    • (2009) PLoS One , vol.4
    • Glazov, E.A.1    Kongsuwan, K.2    Assavalapsakul, W.3    Horwood, P.F.4    Mitter, N.5
  • 36
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, et al. (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5
  • 38
    • 52949091534 scopus 로고    scopus 로고
    • The let-7 family of microRNAs
    • Roush S, Slack FJ (2008) The let-7 family of microRNAs. Trends Cell Biol 18: 505-516.
    • (2008) Trends Cell Biol , vol.18 , pp. 505-516
    • Roush, S.1    Slack, F.J.2
  • 39
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville S, Bartel DP (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 40
    • 63249099917 scopus 로고    scopus 로고
    • Functional links between clustered microRNAs: Suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer
    • Kim YK, Yu J, Han TS, Park SY, Namkoong B, et al. (2009) Functional links between clustered microRNAs: suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer. Nucleic Acids Res 37: 1672-1681.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1672-1681
    • Kim, Y.K.1    Yu, J.2    Han, T.S.3    Park, S.Y.4    Namkoong, B.5
  • 41
    • 45749124784 scopus 로고    scopus 로고
    • A computational screen for mouse signaling pathways targeted by microRNA clusters
    • Xu J, Wong C (2008) A computational screen for mouse signaling pathways targeted by microRNA clusters. RNA 14: 1276-1283.
    • (2008) RNA , vol.14 , pp. 1276-1283
    • Xu, J.1    Wong, C.2
  • 42
    • 22244485402 scopus 로고    scopus 로고
    • Orthologous repeats and mammalian phylogenetic inference
    • Bashir A, Ye C, Price AL, Bafna V (2005) Orthologous repeats and mammalian phylogenetic inference. Genome Res 15: 998-1006.
    • (2005) Genome Res , vol.15 , pp. 998-1006
    • Bashir, A.1    Ye, C.2    Price, A.L.3    Bafna, V.4
  • 43
    • 63049087072 scopus 로고    scopus 로고
    • Rapid evolution of mammalian X-linked testis microRNAs
    • doi: 10.1186/1471-2164-10-97
    • Guo X, Su B, Zhou Z, Sha J (2009) Rapid evolution of mammalian X-linked testis microRNAs. BMC Genomics 10: 97. doi: 10.1186/1471-2164-10-97.
    • (2009) BMC Genomics , vol.10 , pp. 97
    • Guo, X.1    Su, B.2    Zhou, Z.3    Sha, J.4
  • 44
    • 34248196026 scopus 로고    scopus 로고
    • Rapid evolution of an X-linked microRNA cluster in primates
    • Zhang R, Peng Y, Wang W, Su B (2007) Rapid evolution of an X-linked microRNA cluster in primates. Genome Res 17: 612-617.
    • (2007) Genome Res , vol.17 , pp. 612-617
    • Zhang, R.1    Peng, Y.2    Wang, W.3    Su, B.4
  • 45
    • 63449134696 scopus 로고    scopus 로고
    • Many X-linked microRNAs escape meiotic sex chromosome inactivation
    • Song R, Ro S, Michaels JD, Park C, McCarrey JR, et al. (2009) Many X-linked microRNAs escape meiotic sex chromosome inactivation. Nat Genet 41: 488-493.
    • (2009) Nat Genet , vol.41 , pp. 488-493
    • Song, R.1    Ro, S.2    Michaels, J.D.3    Park, C.4    McCarrey, J.R.5
  • 46
    • 52449084200 scopus 로고    scopus 로고
    • Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
    • doi: 10.1371/journal.pone.0003225
    • Huang TH, Zhu MJ, Li XY, Zhao SH (2008) Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development. PLoS One 3: e3225. doi: 10.1371/journal.pone.0003225.
    • (2008) PLoS One , vol.3
    • Huang, T.H.1    Zhu, M.J.2    Li, X.Y.3    Zhao, S.H.4
  • 47
    • 61449120270 scopus 로고    scopus 로고
    • MicroRNA transcriptome profiles during swine skeletal muscle development
    • doi: 10.1186/1471-2164-10-77
    • McDaneld TG, Smith TP, Doumit ME, Miles JR, Coutinho LL, et al. (2009) MicroRNA transcriptome profiles during swine skeletal muscle development. BMC Genomics 10: 77. doi: 10.1186/1471-2164-10-77.
    • (2009) BMC Genomics , vol.10 , pp. 77
    • McDaneld, T.G.1    Smith, T.P.2    Doumit, M.E.3    Miles, J.R.4    Coutinho, L.L.5
  • 48
    • 77951628592 scopus 로고    scopus 로고
    • MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    • In press. doi: 10.1111/j.1365-2052.2009.01981.x
    • Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, et al. (2009) MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing. Anim Genet;In press. doi: 10.1111/j.1365-2052.2009.01981.x.
    • (2009) Anim Genet
    • Nielsen, M.1    Hansen, J.H.2    Hedegaard, J.3    Nielsen, R.O.4    Panitz, F.5
  • 49
    • 60849102774 scopus 로고    scopus 로고
    • Cloning, characterization and expression analysis of porcine microRNAs
    • doi: 10.1186/1471-2164-10-65
    • Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, et al. (2009) Cloning, characterization and expression analysis of porcine microRNAs. BMC Genomics 10: 65. doi: 10.1186/1471-2164-10-65.
    • (2009) BMC Genomics , vol.10 , pp. 65
    • Reddy, A.M.1    Zheng, Y.2    Jagadeeswaran, G.3    Macmil, S.L.4    Graham, W.B.5
  • 50
    • 77951652207 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from porcine skeletal muscle
    • In press. doi: 10.1111/j.1365-2052.2009.01991.x
    • Xie SS, Huang TH, Shen Y, Li XY, Zhang XX, et al. (2009) Identification and characterization of microRNAs from porcine skeletal muscle. Anim Genet. In press. doi: 10.1111/j.1365-2052.2009.01991.x.
    • (2009) Anim Genet
    • Xie, S.S.1    Huang, T.H.2    Shen, Y.3    Li, X.Y.4    Zhang, X.X.5
  • 51
    • 84934438960 scopus 로고    scopus 로고
    • UNAFold: Software for nucleic acid folding and hybridization
    • Markham NR, Zuker M (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 453: 3-31
    • (2008) Methods Mol Biol , vol.453 , pp. 3-31
    • Markham, N.R.1    Zuker, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.