메뉴 건너뛰기




Volumn 39, Issue 2, 2011, Pages 729-743

Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENDONUCLEASE; MEGANUCLEASE; RAG1 PROTEIN; UNCLASSIFIED DRUG;

EID: 79551491956     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq801     Document Type: Article
Times cited : (58)

References (43)
  • 1
    • 0038799991 scopus 로고    scopus 로고
    • Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae
    • Paques, F. and Haber, J.E. (1999) Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev., 63, 349-404.
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 349-404
    • Paques, F.1    Haber, J.E.2
  • 2
    • 0034951142 scopus 로고    scopus 로고
    • Double-strand-break-induced homologous recombination in mammalian cells
    • Johnson, R.D. and Jasin, M. (2001) Double-strand-break-induced homologous recombination in mammalian cells. Biochem. Soc. Trans., 29, 196-201.
    • (2001) Biochem. Soc. Trans. , vol.29 , pp. 196-201
    • Johnson, R.D.1    Jasin, M.2
  • 4
    • 33646182222 scopus 로고    scopus 로고
    • Efficient gene targeting in Drosophila with zinc-finger nucleases
    • Beumer, K., Bhattacharyya, G., Bibikova, M., Trautman, J.K. and Carroll, D. (2006) Efficient gene targeting in Drosophila with zinc-finger nucleases. Genetics, 172, 2391-2403.
    • (2006) Genetics , vol.172 , pp. 2391-2403
    • Beumer, K.1    Bhattacharyya, G.2    Bibikova, M.3    Trautman, J.K.4    Carroll, D.5
  • 7
    • 0037178209 scopus 로고    scopus 로고
    • A fluorimetric assay for on-line detection of DNA cleavage by restriction endonucleases
    • Eisenschmidt, K., Lanio, T., Jeltsch, A. and Pingoud, A. (2002) A fluorimetric assay for on-line detection of DNA cleavage by restriction endonucleases. J. Biotechnol., 96, 185-191.
    • (2002) J. Biotechnol. , vol.96 , pp. 185-191
    • Eisenschmidt, K.1    Lanio, T.2    Jeltsch, A.3    Pingoud, A.4
  • 9
    • 0030930308 scopus 로고    scopus 로고
    • Purification, biochemical characterization and protein-DNA interactions of the I-CreI endonuclease produced in Escherichia coli
    • Wang, J., Kim, H.H., Yuan, X. and Herrin, D.L. (1997) Purification, biochemical characterization and protein-DNA interactions of the I-CreI endonuclease produced in Escherichia coli. Nucleic Acids Res., 25, 3767-3776.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3767-3776
    • Wang, J.1    Kim, H.H.2    Yuan, X.3    Herrin, D.L.4
  • 10
    • 0032185110 scopus 로고    scopus 로고
    • DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI
    • Jurica, M.S., Monnat, R.J. Jr. and Stoddard, B.L. (1998) DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI. Mol. Cell, 2, 469-476.
    • (1998) Mol. Cell , vol.2 , pp. 469-476
    • Jurica, M.S.1    Monnat Jr., R.J.2    Stoddard, B.L.3
  • 11
    • 0030777960 scopus 로고    scopus 로고
    • Genetic analysis of the Chlamydomonas reinhardtii I-CreI mobile intron homing system in Escherichia coli
    • Seligman, L.M., Stephens, K.M., Savage, J.H. and Monnat, R.J. Jr. (1997) Genetic analysis of the Chlamydomonas reinhardtii I-CreI mobile intron homing system in Escherichia coli. Genetics, 147, 1653-1664.
    • (1997) Genetics , vol.147 , pp. 1653-1664
    • Seligman, L.M.1    Stephens, K.M.2    Savage, J.H.3    Monnat Jr., R.J.4
  • 12
  • 17
    • 23444450226 scopus 로고    scopus 로고
    • Semi-rational approaches to engineering enzyme activity: Combining the benefits of directed evolution and rational design
    • Chica, R.A., Doucet, N. and Pelletier, J.N. (2005) Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design. Curr. Opin. Biotechnol., 16, 378-384.
    • (2005) Curr. Opin. Biotechnol. , vol.16 , pp. 378-384
    • Chica, R.A.1    Doucet, N.2    Pelletier, J.N.3
  • 18
    • 0025301095 scopus 로고
    • RAG-1 and RAG-2, adjacent genes that synergistically activate v (D) J recombination
    • Oettinger, M.A., Schatz, D.G., Gorka, C. and Baltimore, D. (1990) RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination. Science, 248, 1517-1523.
    • (1990) Science , vol.248 , pp. 1517-1523
    • Oettinger, M.A.1    Schatz, D.G.2    Gorka, C.3    Baltimore, D.4
  • 19
    • 0024846088 scopus 로고
    • The V(D) J recombination activating gene, RAG-1
    • Schatz, D.G., Oettinger, M.A. and Baltimore, D. (1989) The V(D)J recombination activating gene, RAG-1. Cell, 59, 1035-1048.
    • (1989) Cell , vol.59 , pp. 1035-1048
    • Schatz, D.G.1    Oettinger, M.A.2    Baltimore, D.3
  • 21
    • 0034687695 scopus 로고    scopus 로고
    • N-terminal RAG1 frameshift mutations in Omenn's syndrome: Internal methionine usage leads to partial V(D) J recombination activity and reveals a fundamental role in vivo for the N-terminal domains
    • Santagata, S., Gomez, C.A., Sobacchi, C., Bozzi, F., Abinun, M., Pasic, S., Cortes, P., Vezzoni, P. and Villa, A. (2000) N-terminal RAG1 frameshift mutations in Omenn's syndrome: internal methionine usage leads to partial V(D)J recombination activity and reveals a fundamental role in vivo for the N-terminal domains. Proc. Natl Acad. Sci. USA, 97, 14572-14577.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 14572-14577
    • Santagata, S.1    Gomez, C.A.2    Sobacchi, C.3    Bozzi, F.4    Abinun, M.5    Pasic, S.6    Cortes, P.7    Vezzoni, P.8    Villa, A.9
  • 24
    • 34250828453 scopus 로고    scopus 로고
    • The C-terminal loop of the homing endonuclease I-CreI is essential for site recognition, DNA binding and cleavage
    • Prieto, J., Redondo, P., Padro, D., Arnould, S., Epinat, J.C., Paques, F., Blanco, F.J. and Montoya, G. (2007) The C-terminal loop of the homing endonuclease I-CreI is essential for site recognition, DNA binding and cleavage. Nucleic Acids Res., 35, 3262-3271.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3262-3271
    • Prieto, J.1    Redondo, P.2    Padro, D.3    Arnould, S.4    Epinat, J.C.5    Paques, F.6    Blanco, F.J.7    Montoya, G.8
  • 25
    • 0032010153 scopus 로고    scopus 로고
    • A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra
    • Zhang, Z. and Marshall, A.G. (1998) A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra. J. Am. Soc. Mass Spectrom., 9, 225-233.
    • (1998) J. Am. Soc. Mass Spectrom. , vol.9 , pp. 225-233
    • Zhang, Z.1    Marshall, A.G.2
  • 27
    • 0003076963 scopus 로고
    • Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4+ ESF-EAMCB
    • Leslie, A.G.W. (1992) Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4+ ESF-EAMCB. Newslett. Protein Crystallogr., 26.
    • (1992) Newslett. Protein Crystallogr. , pp. 26
    • Leslie, A.G.W.1
  • 30
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A., 47 (Pt 2), 110-119.
    • (1991) Acta Crystallogr. A. , vol.47 , Issue.PART 2 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 33
    • 33846799362 scopus 로고    scopus 로고
    • Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV
    • Ivanov, I., Tainer, J.A. and McCammon, J.A. (2007) Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV. Proc. Natl. Acad. Sci. USA, 104, 1465-1470.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1465-1470
    • Ivanov, I.1    Tainer, J.A.2    McCammon, J.A.3
  • 34
    • 0033515394 scopus 로고    scopus 로고
    • A new ONIOM implementation in Gaussian .98. 1. The calculation of energies, gradients and vibrational frequencies and electric field derivatives
    • Dapprich, S., Komá romi, I., Byun, K.S., Morokuma, K. and Frisch, M.J. (1999) A new ONIOM implementation in Gaussian .98. 1. The calculation of energies, gradients and vibrational frequencies and electric field derivatives. J. Mol. Struct., 462, 1-21.
    • (1999) J. Mol. Struct. , vol.462 , pp. 1-21
    • Dapprich, S.1    Komáromi, I.2    Byun, K.S.3    Morokuma, K.4    Frisch, M.J.5
  • 35
    • 0036291145 scopus 로고    scopus 로고
    • Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
    • Guerois, R., Nielsen, J.E. and Serrano, L. (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol., 320, 369-387.
    • (2002) J. Mol. Biol. , vol.320 , pp. 369-387
    • Guerois, R.1    Nielsen, J.E.2    Serrano, L.3
  • 37
    • 63249127088 scopus 로고    scopus 로고
    • Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins
    • Li, H., Pellenz, S., Ulge, U., Stoddard, B.L. and Monnat, R.J. Jr. (2009) Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins. Nucleic Acids Res., 37, 1650-1662.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1650-1662
    • Li, H.1    Pellenz, S.2    Ulge, U.3    Stoddard, B.L.4    Monnat Jr., R.J.5
  • 40
    • 0030779879 scopus 로고    scopus 로고
    • Chromosomal double-strand breaks induce gene conversion at high frequency in mammalian cells
    • Taghian, D.G. and Nickoloff, J.A. (1997) Chromosomal double-strand breaks induce gene conversion at high frequency in mammalian cells. Mol. Cell Biol., 17, 6386-6393.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 6386-6393
    • Taghian, D.G.1    Nickoloff, J.A.2
  • 42
    • 70349404436 scopus 로고    scopus 로고
    • Targeted approaches for gene therapy and the emergence of engineered meganucleases
    • Galetto, R., Duchateau, P. and Paques, F. (2009) Targeted approaches for gene therapy and the emergence of engineered meganucleases. Expert Opin. Biol. Ther., 9, 1289-1303.
    • (2009) Expert Opin. Biol. Ther. , vol.9 , pp. 1289-1303
    • Galetto, R.1    Duchateau, P.2    Paques, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.