-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F., R. Zardoya, and D. Posada. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
44849083699
-
Widespread distribution of proteorho-dopsins in freshwater and brackish ecosystems
-
Atamna-Ismaeel, N., et al. 2008. Widespread distribution of proteorho-dopsins in freshwater and brackish ecosystems. ISME J. 2:656-662.
-
(2008)
ISME J.
, vol.2
, pp. 656-662
-
-
Atamna-Ismaeel, N.1
-
4
-
-
63849269776
-
Prokaryotic genomes and diversity in surface ocean waters: Interrogating the global ocean sampling metagenome
-
Biers, E. J., S. L. Sun, and E. C. Howard. 2009. Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome. Appl. Environ. Microbiol. 75:2221-2229.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 2221-2229
-
-
Biers, E.J.1
Sun, S.L.2
Howard, E.C.3
-
5
-
-
50049085522
-
Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity
-
Bryant, J. A., C. Lamanna, H. Morlon, A. J. Kerkhoff, B. J. Enquist, and J. L. Green. 2008. Microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity. Proc. Natl. Acad. Sci. U. S. A. 105(Suppl. 1):11505-11511.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, Issue.SUPPL. 1
, pp. 11505-11511
-
-
Bryant, J.A.1
Lamanna, C.2
Morlon, H.3
Kerkhoff, A.J.4
Enquist, B.J.5
Green, J.L.6
-
8
-
-
1642376424
-
Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time
-
Crump, B. C., C. S. Hopkinson, M. L. Sogin, and J. E. Hobbie. 2004. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl. Environ. Microbiol. 70:1494-1505.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1494-1505
-
-
Crump, B.C.1
Hopkinson, C.S.2
Sogin, M.L.3
Hobbie, J.E.4
-
9
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. R. 1998. Profile hidden Markov models. Bioinformatics 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
10
-
-
38849150243
-
Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean
-
Elifantz, H., L. A. Waidner, V. K. Michelou, M. T. Cottrell, and D. L. Kirchman. 2008. Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean. FEMS Microbiol. Ecol. 63:316-327.
-
(2008)
FEMS Microbiol. Ecol.
, vol.63
, pp. 316-327
-
-
Elifantz, H.1
Waidner, L.A.2
Michelou, V.K.3
Cottrell, M.T.4
Kirchman, D.L.5
-
11
-
-
0026499429
-
Conservation evaluation and phylogenetic diversity
-
Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61:1-10.
-
(1992)
Biol. Conserv.
, vol.61
, pp. 1-10
-
-
Faith, D.P.1
-
12
-
-
0003133857
-
The ecology of chitin degradation
-
Gooday, G. W. 1990. The ecology of chitin degradation. Adv. Microb. Ecol. 11:387-430.
-
(1990)
Adv. Microb. Ecol.
, vol.11
, pp. 387-430
-
-
Gooday, G.W.1
-
13
-
-
33749859789
-
Phylogenetic clustering and overdispersion in bacterial communities
-
Horner-Devine, M. C., and B. J. M. Bohannan. 2006. Phylogenetic clustering and overdispersion in bacterial communities. Ecology 87:S100-S108.
-
(2006)
Ecology
, vol.87
-
-
Horner-Devine, M.C.1
Bohannan, B.J.M.2
-
14
-
-
48749128146
-
Abundant and diverse bacteria involved in DMSP degradation in marine surface waters
-
Howard, E. C., S. L. Sun, E. J. Biers, and M. A. Moran. 2008. Abundant and diverse bacteria involved in DMSP degradation in marine surface waters. Environ. Microbiol. 10:2397-2410.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 2397-2410
-
-
Howard, E.C.1
Sun, S.L.2
Biers, E.J.3
Moran, M.A.4
-
16
-
-
77951498193
-
Ecological and evolutionary factors underlying global and local assembly of denitrifier communities
-
Jones, C. M., and S. Hallin. 2010. Ecological and evolutionary factors underlying global and local assembly of denitrifier communities. ISME J. 4:633-641.
-
(2010)
ISME J.
, vol.4
, pp. 633-641
-
-
Jones, C.M.1
Hallin, S.2
-
17
-
-
60149095281
-
Evolution of family 18 glycoside hydro-lases: Diversity, domain structures and phylogenetic relationships
-
Karlsson, M., and J. Stenlid. 2009. Evolution of family 18 glycoside hydro-lases: diversity, domain structures and phylogenetic relationships. J. Mol. Microbiol. Biotechnol. 16:208-223.
-
(2009)
J. Mol. Microbiol. Biotechnol.
, vol.16
, pp. 208-223
-
-
Karlsson, M.1
Stenlid, J.2
-
18
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh, K., K. Kuma, H. Toh, and T. Miyata. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
19
-
-
0033538863
-
Hydrolysis and mineralization of chitin in the Delaware Estuary
-
Kirchman, D. L., and J. White. 1999. Hydrolysis and mineralization of chitin in the Delaware Estuary. Aquat. Microb. Ecol. 18:187-196.
-
(1999)
Aquat. Microb. Ecol.
, vol.18
, pp. 187-196
-
-
Kirchman, D.L.1
White, J.2
-
20
-
-
44649171625
-
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
-
Kunin, V., et al. 2008. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol. Syst. Biol. 4:198.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 198
-
-
Kunin, V.1
-
21
-
-
51249171800
-
Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
-
Liesack, W., H. Weyland, and E. Stackebrandt. 1991. Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb. Ecol. 21:191-198.
-
(1991)
Microb. Ecol.
, vol.21
, pp. 191-198
-
-
Liesack, W.1
Weyland, H.2
Stackebrandt, E.3
-
22
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
Logares, R., et al. 2009. Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol. 17:414-422.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 414-422
-
-
Logares, R.1
-
23
-
-
77952670009
-
Species sorting affects bacterio-plankton community composition as determined by 16S rDNA and 16S rRNA fingerprints
-
Logue, J. B., and E. S. Lindstrom. 2010. Species sorting affects bacterio-plankton community composition as determined by 16S rDNA and 16S rRNA fingerprints. ISME J. 4:729-738.
-
(2010)
ISME J.
, vol.4
, pp. 729-738
-
-
Logue, J.B.1
Lindstrom, E.S.2
-
24
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone, C., and R. Knight. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
25
-
-
44849128805
-
Species divergence and the measurement of microbial diversity
-
Lozupone, C. A., and R. Knight. 2008. Species divergence and the measurement of microbial diversity. FEMS Microbiol. Rev. 32:557-578.
-
(2008)
FEMS Microbiol. Rev.
, vol.32
, pp. 557-578
-
-
Lozupone, C.A.1
Knight, R.2
-
26
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
27
-
-
0036795110
-
Molecular analysis of a bacterial chitinolytic community in an upland pasture
-
Metcalfe, A. C., M. Krsek, G. W. Gooday, J. I. Prosser, and E. M. H. Wellington. 2002. Molecular analysis of a bacterial chitinolytic community in an upland pasture. Appl. Environ. Microbiol. 68:5042-5050.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5042-5050
-
-
Metcalfe, A.C.1
Krsek, M.2
Gooday, G.W.3
Prosser, J.I.4
Wellington, E.M.H.5
-
28
-
-
77950023784
-
Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations
-
Oakley, B. B., F. Carbonero, C. J. van der Gast, R. J. Hawkins, and K. J. Purdy. 2010. Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. ISME J. 4:488-497
-
(2010)
ISME J.
, vol.4
, pp. 488-497
-
-
Oakley, B.B.1
Carbonero, F.2
Gast Der Van, C.J.3
Hawkins, R.J.4
Purdy, K.J.5
-
29
-
-
45849154165
-
JModelTest: Phylogenetic model averaging
-
Posada, D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25:1253-1256.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
30
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
-
31
-
-
0033776093
-
Use of a chiA probe for detection of chitinase genes in bacteria from the Chesapeake Bay
-
Ramaiah, N., et al. 2000. Use of a chiA probe for detection of chitinase genes in bacteria from the Chesapeake Bay. FEMS Microbiol. Ecol. 34:63-71.
-
(2000)
FEMS Microbiol. Ecol.
, vol.34
, pp. 63-71
-
-
Ramaiah, N.1
-
32
-
-
33947238287
-
The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch, D. B., et al. 2007. The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5:e77.
-
(2007)
PLoS Biol.
, vol.5
-
-
Rusch, D.B.1
-
33
-
-
33947215475
-
CAMERA: A community resource for metagenomics
-
Seshadri, R., S. A. Kravitz, L. Smarr, P. Gilna, and M. Frazier. 2007. CAMERA: a community resource for metagenomics. PLoS Biol. 5:394- 397.
-
(2007)
PLoS Biol.
, vol.5
, pp. 394-397
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
34
-
-
33645103946
-
From genomes to function: Haloarchaea as model organisms
-
Soppa, J. 2006. From genomes to function: haloarchaea as model organisms. Microbiology 152:585-590.
-
(2006)
Microbiology
, vol.152
, pp. 585-590
-
-
Soppa, J.1
-
35
-
-
60249095885
-
Molecular diversity of bacterial chitinases in arable soils and the effects of environmental factors on the chitinolytic bacterial community
-
Terahara, T., et al. 2009. Molecular diversity of bacterial chitinases in arable soils and the effects of environmental factors on the chitinolytic bacterial community. Soil Biol. Biochem. 41:473-480.
-
(2009)
Soil Biol. Biochem.
, vol.41
, pp. 473-480
-
-
Terahara, T.1
-
36
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., G. M. Garrity, J. M. Tiedje, and J. R. Cole. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
37
-
-
0034450921
-
Molecular detection of bacterial and streptomycete chitinases in the environment
-
Williamson, N., P. Brian, and E. M. H. Wellington. 2000. Molecular detection of bacterial and streptomycete chitinases in the environment. Antonie Van Leeuwenhoek 78:315-321.
-
(2000)
Antonie Van Leeuwenhoek
, vol.78
, pp. 315-321
-
-
Williamson, N.1
Brian, P.2
Wellington, E.M.H.3
|