메뉴 건너뛰기




Volumn 152, Issue 3, 2006, Pages 585-590

From genomes to function: Haloarchaea as model organisms

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PROTEOME; SODIUM CHLORIDE; TRANSCRIPTOME;

EID: 33645103946     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28504-0     Document Type: Short Survey
Times cited : (118)

References (42)
  • 1
    • 2342625231 scopus 로고    scopus 로고
    • Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes
    • Allers, T., Ngo, H. P., Mevarech, M. & Lloyd, R. G. (2004). Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes. Appl Environ Microbiol 70, 943-953.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 943-953
    • Allers, T.1    Ngo, H.P.2    Mevarech, M.3    Lloyd, R.G.4
  • 2
    • 0037069421 scopus 로고    scopus 로고
    • Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
    • 7 other authors
    • Baliga, N. S., Pan, M., Goo, Y. A. & 7 other authors (2002). Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci U S A 99, 14913-14918.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14913-14918
    • Baliga, N.S.1    Pan, M.2    Goo, Y.A.3
  • 3
    • 3042615963 scopus 로고    scopus 로고
    • Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
    • Baliga, N. S., Bjork, S. J., Bonneau, R., Pan, M., Iloanusi, C., Kottemann, M. C., Hood, L. & DiRuggiero, J. (2004a). Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res 14, 1025-1035.
    • (2004) Genome Res , vol.14 , pp. 1025-1035
    • Baliga, N.S.1    Bjork, S.J.2    Bonneau, R.3    Pan, M.4    Iloanusi, C.5    Kottemann, M.C.6    Hood, L.7    DiRuggiero, J.8
  • 4
    • 8744235102 scopus 로고    scopus 로고
    • Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea
    • 12 other authors
    • Baliga, N. S., Bonneau, R., Facciotti, M. T. & 12 other authors (2004b). Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res 14, 2221-2234.
    • (2004) Genome Res , vol.14 , pp. 2221-2234
    • Baliga, N.S.1    Bonneau, R.2    Facciotti, M.T.3
  • 5
    • 0141960376 scopus 로고    scopus 로고
    • An archaeal chromosomal autonomously replicating sequence element from an extreme halophile, Halobacterium sp. strain NRC-1
    • Berquist, B. R. & DasSarma, S. (2003). An archaeal chromosomal autonomously replicating sequence element from an extreme halophile, Halobacterium sp. strain NRC-1. J Bacteriol 185, 5959-5966.
    • (2003) J Bacteriol , vol.185 , pp. 5959-5966
    • Berquist, B.R.1    DasSarma, S.2
  • 6
    • 0038049073 scopus 로고    scopus 로고
    • Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii
    • Bidle, K. A. (2003). Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii. Extremophiles 7, 1-7.
    • (2003) Extremophiles , vol.7 , pp. 1-7
    • Bidle, K.A.1
  • 7
    • 0037309062 scopus 로고    scopus 로고
    • Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene
    • Bitan-Banin, G., Ortenberg, R. & Mevarech, M. (2003). Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene. J Bacteriol 185, 772-778.
    • (2003) J Bacteriol , vol.185 , pp. 772-778
    • Bitan-Banin, G.1    Ortenberg, R.2    Mevarech, M.3
  • 8
    • 10044281116 scopus 로고    scopus 로고
    • Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1
    • Bonneau, R., Baliga, N. S., Deutsch, E. W., Shannon, P. & Hood, L. (2004). Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biol 5, R52.
    • (2004) Genome Biol , vol.5
    • Bonneau, R.1    Baliga, N.S.2    Deutsch, E.W.3    Shannon, P.4    Hood, L.5
  • 9
    • 16344394996 scopus 로고    scopus 로고
    • An efficient proteomics based strategy for the functional characterization of a novel halophilic enzyme from Halobacterium salinarum
    • Choi, J., Joo, W. A., Park, S. J., Lee, S. H. & Kim, C. W. (2005). An efficient proteomics based strategy for the functional characterization of a novel halophilic enzyme from Halobacterium salinarum. Proteomics 5, 907-917.
    • (2005) Proteomics , vol.5 , pp. 907-917
    • Choi, J.1    Joo, W.A.2    Park, S.J.3    Lee, S.H.4    Kim, C.W.5
  • 11
    • 2442659081 scopus 로고    scopus 로고
    • Low-pass sequencing for microbial comparative genomics
    • 7 other authors
    • Goo, Y. A., Roach, J., Glusman, G. & 7 other authors (2004). Low-pass sequencing for microbial comparative genomics. BMC Genomics 5, 3.
    • (2004) BMC Genomics , vol.5 , pp. 3
    • Goo, Y.A.1    Roach, J.2    Glusman, G.3
  • 12
    • 0037015619 scopus 로고    scopus 로고
    • Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex
    • 8 other authors
    • Gordeliy, V. I., Labahn, J., Moukhametzianov, R. & 8 other authors (2002). Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex. Nature 419, 484-487.
    • (2002) Nature , vol.419 , pp. 484-487
    • Gordeliy, V.I.1    Labahn, J.2    Moukhametzianov, R.3
  • 13
    • 13444262558 scopus 로고    scopus 로고
    • In vivo analyses of constitutive and regulated promoters in halophilic archaea
    • Gregor, D. & Pfeifer, F. (2005). In vivo analyses of constitutive and regulated promoters in halophilic archaea. Microbiology 151, 25-33.
    • (2005) Microbiology , vol.151 , pp. 25-33
    • Gregor, D.1    Pfeifer, F.2
  • 14
    • 0038460328 scopus 로고    scopus 로고
    • Isolation of fusion proteins containing SecY and SecE, components of the protein translocation complex from the halophilic archaeon Haloferax volcanii
    • Irihimovitch, V., Ring, G., Elkayam, T., Konrad, Z. & Eichler, J. (2003). Isolation of fusion proteins containing SecY and SecE, components of the protein translocation complex from the halophilic archaeon Haloferax volcanii. Extremophiles 7, 71-77.
    • (2003) Extremophiles , vol.7 , pp. 71-77
    • Irihimovitch, V.1    Ring, G.2    Elkayam, T.3    Konrad, Z.4    Eichler, J.5
  • 15
    • 0037115821 scopus 로고    scopus 로고
    • Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase
    • Jäger, A., Samorski, R., Pfeifer, F. & Klug, G. (2002). Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase. Nucleic Acids Res 30, 5436-5443.
    • (2002) Nucleic Acids Res , vol.30 , pp. 5436-5443
    • Jäger, A.1    Samorski, R.2    Pfeifer, F.3    Klug, G.4
  • 16
    • 13844307729 scopus 로고    scopus 로고
    • Improvement of two-dimensional gel electrophoresis proteome maps of the haloarchaeon Haloferax volcanii
    • Karadzic, I. M. & Maupin-Furlow, J. A. (2005). Improvement of two-dimensional gel electrophoresis proteome maps of the haloarchaeon Haloferax volcanii. Proteomics 5, 354-359.
    • (2005) Proteomics , vol.5 , pp. 354-359
    • Karadzic, I.M.1    Maupin-Furlow, J.A.2
  • 18
    • 9644274247 scopus 로고    scopus 로고
    • An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea
    • Levin, L, Giladi, M., Altman-Price, N., Ortenberg, R. & Mevarech, M. (2004). An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea. Mol Microbiol 54, 1307-1318.
    • (2004) Mol Microbiol , vol.54 , pp. 1307-1318
    • Levin, L.1    Giladi, M.2    Altman-Price, N.3    Ortenberg, R.4    Mevarech, M.5
  • 19
    • 0842326174 scopus 로고    scopus 로고
    • Osmotic shock stimulates de novo synthesis of two cardiolipins in an extreme halophilic archaeon
    • Lopalco, P., Lobasso, S., Babudri, F. & Corcelli, A. (2004). Osmotic shock stimulates de novo synthesis of two cardiolipins in an extreme halophilic archaeon. J Lipid Res 45, 194-201.
    • (2004) J Lipid Res , vol.45 , pp. 194-201
    • Lopalco, P.1    Lobasso, S.2    Babudri, F.3    Corcelli, A.4
  • 20
    • 2342468069 scopus 로고    scopus 로고
    • Three replication origins in Sulfolobus species: Synchronous initiation of chromosome replication and asynchronous termination
    • Lundgren, M., Andersson, A., Chen, L., Nilsson, P. & Bernander, R. (2004). Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc Natl Acad Sci U S A 101, 7046-7051.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 7046-7051
    • Lundgren, M.1    Andersson, A.2    Chen, L.3    Nilsson, P.4    Bernander, R.5
  • 21
    • 11844249908 scopus 로고    scopus 로고
    • A two-alpha-helix extra domain mediates the halophilic character of a plant-type ferredoxin from halophilic archaea
    • Marg, B. L., Schweimer, K., Sticht, H. & Oesterhelt, D. (2005). A two-alpha-helix extra domain mediates the halophilic character of a plant-type ferredoxin from halophilic archaea. Biochemistry 44, 29-39,
    • (2005) Biochemistry , vol.44 , pp. 29-39
    • Marg, B.L.1    Schweimer, K.2    Sticht, H.3    Oesterhelt, D.4
  • 22
    • 27844584769 scopus 로고    scopus 로고
    • UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-I
    • McCready, S., Müller, J. A., Boubriak, L, Berquist, B. R., Ng, W. L. & DasSarma, S. (2005). UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-I. Saline Systems 1, 3.
    • (2005) Saline Systems , vol.1 , pp. 3
    • McCready, S.1    Müller, J.A.2    Boubriak, L.3    Berquist, B.R.4    Ng, W.L.5    DasSarma, S.6
  • 23
    • 14244250412 scopus 로고    scopus 로고
    • Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: Dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors
    • Müller, J. A. & DasSarma, S. (2005). Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors. J Bacteriol 187, 1659-1667.
    • (2005) J Bacteriol , vol.187 , pp. 1659-1667
    • Müller, J.A.1    DasSarma, S.2
  • 24
    • 12944270421 scopus 로고    scopus 로고
    • Genome sequence of Halobacterium species NRC-1
    • 40 other authors
    • Ng, W. V., Kennedy, S. P., Mahairas, G. G. & 40 other authors (2000). Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci U S A 97, 12176-12181.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 12176-12181
    • Ng, W.V.1    Kennedy, S.P.2    Mahairas, G.G.3
  • 25
    • 0033962956 scopus 로고    scopus 로고
    • Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a couterselectable marker
    • Peck, R. F., DasSarma, S. & Krebs, M. P. (2000). Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a couterselectable marker. Mol Microbiol 35, 667-676.
    • (2000) Mol Microbiol , vol.35 , pp. 667-676
    • Peck, R.F.1    DasSarma, S.2    Krebs, M.P.3
  • 26
    • 10444253995 scopus 로고    scopus 로고
    • Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins
    • Reuter, C. J. & Maupin-Furlow, J. A. (2004). Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins. Appl Environ Microbial 70, 7530-7538.
    • (2004) Appl Environ Microbial , vol.70 , pp. 7530-7538
    • Reuter, C.J.1    Maupin-Furlow, J.A.2
  • 27
    • 0942301197 scopus 로고    scopus 로고
    • In vivo studies on putative Shine-Dalgarno sequences of the halophilic archaeon Halobacterium salinarum
    • Sartorius-Neef, S. & Pfeifer, F. (2004). In vivo studies on putative Shine-Dalgarno sequences of the halophilic archaeon Halobacterium salinarum. Mol Microbiol 51, 579-588.
    • (2004) Mol Microbiol , vol.51 , pp. 579-588
    • Sartorius-Neef, S.1    Pfeifer, F.2
  • 28
    • 0038649076 scopus 로고    scopus 로고
    • Crystallographic structures of the M and N intermediates of bacteriorhodopsin: Assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base
    • Schobert, B., Brown, L. S. & Lanyi, J. K. (2003). Crystallographic structures of the M and N intermediates of bacteriorhodopsin: assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base. J Mol Biol 330, 553-570.
    • (2003) J Mol Biol , vol.330 , pp. 553-570
    • Schobert, B.1    Brown, L.S.2    Lanyi, J.K.3
  • 29
    • 3042692367 scopus 로고    scopus 로고
    • Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins
    • Shmuely, H., Dinitz, E., Dahan, L, Eichler, J., Fischer, D. & Shaanan, B. (2004). Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins. Bioinformatics 20, 1248-1253.
    • (2004) Bioinformatics , vol.20 , pp. 1248-1253
    • Shmuely, H.1    Dinitz, E.2    Dahan, L.3    Eichler, J.4    Fischer, D.5    Shaanan, B.6
  • 30
    • 27844543261 scopus 로고    scopus 로고
    • From replication to cultivation: Hot news from haloarchaea
    • Soppa, J. (2005). From replication to cultivation: hot news from haloarchaea. Curr Opin Microbiol 8, 737-744.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 737-744
    • Soppa, J.1
  • 31
    • 0030825661 scopus 로고    scopus 로고
    • The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation
    • Soppa, J. & Link, T. A. (1997). The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation. Eur J Biochem 249, 318-324.
    • (1997) Eur J Biochem , vol.249 , pp. 318-324
    • Soppa, J.1    Link, T.A.2
  • 32
    • 19944433449 scopus 로고    scopus 로고
    • Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation
    • 7 other authors
    • Tebbe, A., Klein, C., Bisle, B. & 7 other authors (2005). Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation. Proteomics 5, 168-179.
    • (2005) Proteomics , vol.5 , pp. 168-179
    • Tebbe, A.1    Klein, C.2    Bisle, B.3
  • 33
    • 17444421169 scopus 로고    scopus 로고
    • Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance
    • Tu, D., Blaha, G., Moore, P. B. & Steitz, T. A. (2005). Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance. Cell 121, 257-270.
    • (2005) Cell , vol.121 , pp. 257-270
    • Tu, D.1    Blaha, G.2    Moore, P.B.3    Steitz, T.A.4
  • 34
    • 2342496783 scopus 로고    scopus 로고
    • Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout system
    • Wang, G., Kennedy, S. P., Fasiludeen, S., Rensing, C. & DasSarma, S. (2004). Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout System. J Bacteriol 186, 3187-3194.
    • (2004) J Bacteriol , vol.186 , pp. 3187-3194
    • Wang, G.1    Kennedy, S.P.2    Fasiludeen, S.3    Rensing, C.4    DasSarma, S.5
  • 35
    • 0345151823 scopus 로고    scopus 로고
    • Genetic identification of three ABC transporters as essential elements for nitrate respiration in Haloferax volcanii
    • Wanner, C. & Soppa, J. (1999). Genetic identification of three ABC transporters as essential elements for nitrate respiration in Haloferax volcanii. Genetics 152, 1417-1428.
    • (1999) Genetics , vol.152 , pp. 1417-1428
    • Wanner, C.1    Soppa, J.2
  • 36
    • 0036096734 scopus 로고    scopus 로고
    • Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii
    • Wanner, C. & Soppa, J. (2002). Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii. J Bacteriol 184, 3114-3121.
    • (2002) J Bacteriol , vol.184 , pp. 3114-3121
    • Wanner, C.1    Soppa, J.2
  • 37
    • 0036408309 scopus 로고    scopus 로고
    • The effect of salts on the activity and stability of Escherichia coli and Haloferax volcanii dihydrofolate reductases
    • Wright, D. B., Banks, D. D., Lohman, J. R., Hilsenbeck, J. L. & Gloss, L. M. (2002). The effect of salts on the activity and stability of Escherichia coli and Haloferax volcanii dihydrofolate reductases. J Mol Biol 323, 327-344.
    • (2002) J Mol Biol , vol.323 , pp. 327-344
    • Wright, D.B.1    Banks, D.D.2    Lohman, J.R.3    Hilsenbeck, J.L.4    Gloss, L.M.5
  • 38
    • 0038693118 scopus 로고    scopus 로고
    • Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii
    • Zaigler, A., Schuster, S. C. & Soppa, J. (2003). Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii. Mol Microbiol 48, 1089-1105.
    • (2003) Mol Microbiol , vol.48 , pp. 1089-1105
    • Zaigler, A.1    Schuster, S.C.2    Soppa, J.3
  • 39
    • 4644286770 scopus 로고    scopus 로고
    • Iron-oxo clusters biomineralizing on protein surfaces: Structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states
    • Zeth, K., Offermann, S., Essen, L. O. & Oesterhelt, D. (2004). Iron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states. Proc Natl Acad Sci U S A 101, 13780-13785.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 13780-13785
    • Zeth, K.1    Offermann, S.2    Essen, L.O.3    Oesterhelt, D.4
  • 40
    • 0037459196 scopus 로고    scopus 로고
    • Multiple replication origins of the archaeon Halobacterium species NRC-1
    • Zhang, R. & Zhang, C. T. (2003). Multiple replication origins of the archaeon Halobacterium species NRC-1. Biochem Biophys Res Commun 302, 728-734.
    • (2003) Biochem Biophys Res Commun , vol.302 , pp. 728-734
    • Zhang, R.1    Zhang, C.T.2
  • 41
    • 20144380867 scopus 로고    scopus 로고
    • Identification of replication origins in archaeal genomes based on the Z-curve method
    • Zhang, R. & Zhang, C. T. (2005). Identification of replication origins in archaeal genomes based on the Z-curve method. Archaea 1, 335-346.
    • (2005) Archaea , vol.1 , pp. 335-346
    • Zhang, R.1    Zhang, C.T.2
  • 42
    • 0041663975 scopus 로고    scopus 로고
    • Regulation of the expression of gas vesicle genes in Haloferax mediterranei: Interaction of the two regulatory proteins GvpD and GvpE
    • Zimmermann, P. & Pfeifer, F. (2003). Regulation of the expression of gas vesicle genes in Haloferax mediterranei: interaction of the two regulatory proteins GvpD and GvpE. Mol Microbiol 49, 783-794.
    • (2003) Mol Microbiol , vol.49 , pp. 783-794
    • Zimmermann, P.1    Pfeifer, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.