-
1
-
-
0035319656
-
Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
-
Braker G., Ayala-del-Rio H.L., Devol A.H., Fesefeldt A., and Tiedje J.M. Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Applied and Environmental Microbiology 67 (2001) 1893-1901
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 1893-1901
-
-
Braker, G.1
Ayala-del-Rio, H.L.2
Devol, A.H.3
Fesefeldt, A.4
Tiedje, J.M.5
-
3
-
-
23944451594
-
Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific
-
Castro-Gonzalez M., Braker G., Farias L., and Ulloa O. Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific. Environmental Microbiology 7 (2005) 1298-1306
-
(2005)
Environmental Microbiology
, vol.7
, pp. 1298-1306
-
-
Castro-Gonzalez, M.1
Braker, G.2
Farias, L.3
Ulloa, O.4
-
6
-
-
0034010276
-
Selected chitinase genes in cultured and uncultured marine bacteria in the alpha- and gamma-subclasses of the proteobacteria
-
Cottrell M.T., Wood D.N., Yu L., and Kirchman D.L. Selected chitinase genes in cultured and uncultured marine bacteria in the alpha- and gamma-subclasses of the proteobacteria. Applied and Environmental Microbiology 66 (2000) 1195-1201
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 1195-1201
-
-
Cottrell, M.T.1
Wood, D.N.2
Yu, L.3
Kirchman, D.L.4
-
8
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
10
-
-
0037338334
-
Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils
-
Girvan M.S., Bullimore J., Pretty N., Osborn A.M., and Ball A.S. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology 69 (2003) 1800-1809
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 1800-1809
-
-
Girvan, M.S.1
Bullimore, J.2
Pretty, N.3
Osborn, A.M.4
Ball, A.S.5
-
11
-
-
0034104061
-
Chitinolytic activity of actinomycetes from a cerrado soil and their potential in biocontrol
-
Gomes R.C., Semedo L.T., Soares R.M., Alviano C.S., Linhares L.F., and Coelho R.R. Chitinolytic activity of actinomycetes from a cerrado soil and their potential in biocontrol. Letters in Applied Microbiology 30 (2000) 146-150
-
(2000)
Letters in Applied Microbiology
, vol.30
, pp. 146-150
-
-
Gomes, R.C.1
Semedo, L.T.2
Soares, R.M.3
Alviano, C.S.4
Linhares, L.F.5
Coelho, R.R.6
-
12
-
-
0035073503
-
Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi
-
Gomes R.C., Semedo L.T., Soares R.M., Linhares L.F., Ulhoa C.J., Alviano C.S., and Coelho R.R. Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi. Journal of Applied Microbiology 90 (2001) 653-661
-
(2001)
Journal of Applied Microbiology
, vol.90
, pp. 653-661
-
-
Gomes, R.C.1
Semedo, L.T.2
Soares, R.M.3
Linhares, L.F.4
Ulhoa, C.J.5
Alviano, C.S.6
Coelho, R.R.7
-
13
-
-
0003133857
-
The ecology of chitin degradation
-
Gooday G.W. The ecology of chitin degradation. Advances in Microbial Ecology 11 (1990) 387-430
-
(1990)
Advances in Microbial Ecology
, vol.11
, pp. 387-430
-
-
Gooday, G.W.1
-
14
-
-
0017200010
-
Influences of soil acidity on Streptomyces populations inhabiting forest soils
-
Hagedorn C. Influences of soil acidity on Streptomyces populations inhabiting forest soils. Applied and Environmental Microbiology 32 (1976) 368-375
-
(1976)
Applied and Environmental Microbiology
, vol.32
, pp. 368-375
-
-
Hagedorn, C.1
-
15
-
-
0027225980
-
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat B., and Bairoch A. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochemical Journal 293 3 (1993) 781-788
-
(1993)
Biochemical Journal
, vol.293
, Issue.3
, pp. 781-788
-
-
Henrissat, B.1
Bairoch, A.2
-
16
-
-
0035458355
-
Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling
-
Horz H.P., Yimga M.T., and Liesack W. Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling. Applied and Environmental Microbiology 67 (2001) 4177-4185
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 4177-4185
-
-
Horz, H.P.1
Yimga, M.T.2
Liesack, W.3
-
17
-
-
33644965780
-
Long-term monitoring of the succession of a microbial community in activated sludge from a circulation flush toilet as a closed system
-
Hoshino T., Terahara T., Yamada K., Okuda H., Suzuki S., Tsuneda S., Hirata A., and Inamori Y. Long-term monitoring of the succession of a microbial community in activated sludge from a circulation flush toilet as a closed system. FEMS Microbiology Ecology 55 (2006) 459-470
-
(2006)
FEMS Microbiology Ecology
, vol.55
, pp. 459-470
-
-
Hoshino, T.1
Terahara, T.2
Yamada, K.3
Okuda, H.4
Suzuki, S.5
Tsuneda, S.6
Hirata, A.7
Inamori, Y.8
-
18
-
-
27444442392
-
Molecular analysis of microbial population transition associated with the start of denitrification in a wastewater treatment process
-
Hoshino T., Terahara T., Tsuneda S., Hirata A., and Inamori Y. Molecular analysis of microbial population transition associated with the start of denitrification in a wastewater treatment process. Journal of Applied Microbiology 99 (2005) 1165-1175
-
(2005)
Journal of Applied Microbiology
, vol.99
, pp. 1165-1175
-
-
Hoshino, T.1
Terahara, T.2
Tsuneda, S.3
Hirata, A.4
Inamori, Y.5
-
19
-
-
51649125501
-
Microbial community analysis in the rhizosphere of a transgenic tomato that overexpresses 3-hydroxy-3-methylglutaryl coenzyme A reductase
-
Ikeda S., Omura T., Ytow N., Komaki H., Minamisawa K., Ezura H., and Fujimura T. Microbial community analysis in the rhizosphere of a transgenic tomato that overexpresses 3-hydroxy-3-methylglutaryl coenzyme A reductase. Microbes and Environments 21 (2006) 261-271
-
(2006)
Microbes and Environments
, vol.21
, pp. 261-271
-
-
Ikeda, S.1
Omura, T.2
Ytow, N.3
Komaki, H.4
Minamisawa, K.5
Ezura, H.6
Fujimura, T.7
-
20
-
-
84975823160
-
Evaluation of soil DNA from arable land in Japan using modified direct-extraction method
-
Ikeda S., Watanabe K.N., Minamisawa K., and Ytow N. Evaluation of soil DNA from arable land in Japan using modified direct-extraction method. Microbes and Environments 19 (2004) 301-309
-
(2004)
Microbes and Environments
, vol.19
, pp. 301-309
-
-
Ikeda, S.1
Watanabe, K.N.2
Minamisawa, K.3
Ytow, N.4
-
21
-
-
60249092998
-
Analysis of molecular diversity of bacterial chitinase genes in the maize rhizosphere using culture-independent methods
-
Ikeda S., Ytow N., Ezura H., Minamisawa K., Miyashita K., and Fujimura T. Analysis of molecular diversity of bacterial chitinase genes in the maize rhizosphere using culture-independent methods. Microbes and Environments 22 (2007) 71-77
-
(2007)
Microbes and Environments
, vol.22
, pp. 71-77
-
-
Ikeda, S.1
Ytow, N.2
Ezura, H.3
Minamisawa, K.4
Miyashita, K.5
Fujimura, T.6
-
22
-
-
0032714186
-
Physiological aspects of chitin catabolism in marine bacteria
-
Keyhani N.O., and Roseman S. Physiological aspects of chitin catabolism in marine bacteria. Biochimica et Biophysica Acta 1473 (1999) 108-122
-
(1999)
Biochimica et Biophysica Acta
, vol.1473
, pp. 108-122
-
-
Keyhani, N.O.1
Roseman, S.2
-
23
-
-
0033538863
-
Hydrolysis and mineralization of chitin in the Delaware Estuary
-
Kirchman D.L., and White J. Hydrolysis and mineralization of chitin in the Delaware Estuary. Aquatic Microbial Ecology 18 (1999) 187-196
-
(1999)
Aquatic Microbial Ecology
, vol.18
, pp. 187-196
-
-
Kirchman, D.L.1
White, J.2
-
24
-
-
24944533365
-
Non-metric multidimensional scaling: a numerical method
-
Kruskal J.B. Non-metric multidimensional scaling: a numerical method. Psychometrika 29 (1964) 115-129
-
(1964)
Psychometrika
, vol.29
, pp. 115-129
-
-
Kruskal, J.B.1
-
25
-
-
0033868844
-
Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae
-
Leser T.D., Lindecrona R.H., Jensen T.K., Jensen B.B., and Moller K. Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae. Applied and Environmental Microbiology 66 (2000) 3290-3296
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 3290-3296
-
-
Leser, T.D.1
Lindecrona, R.H.2
Jensen, T.K.3
Jensen, B.B.4
Moller, K.5
-
26
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu W.T., Marsh T.L., Cheng H., and Foreny L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63 (1997) 4516-4522
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Foreny, L.J.4
-
27
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C.A., and Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 71 (2005) 8228-8235
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.A.1
Knight, R.2
-
29
-
-
0034119122
-
Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants
-
Lukow T., Dunfield P.F., and Liesack W. Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiology Ecology 32 (2000) 241-247
-
(2000)
FEMS Microbiology Ecology
, vol.32
, pp. 241-247
-
-
Lukow, T.1
Dunfield, P.F.2
Liesack, W.3
-
30
-
-
0036795110
-
Molecular analysis of a bacterial chitinolytic community in an upland pasture
-
Metcalfe A.C., Krsek M., Gooday G.W., Prosser J.I., and Wellington E.M. Molecular analysis of a bacterial chitinolytic community in an upland pasture. Applied and Environmental Microbiology 68 (2002) 5042-5050
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 5042-5050
-
-
Metcalfe, A.C.1
Krsek, M.2
Gooday, G.W.3
Prosser, J.I.4
Wellington, E.M.5
-
31
-
-
0028674857
-
Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones
-
Newman T., De Bruijn F.J., Green P., Keegstra K., Kende H., McIntosh L., Ohlrogge J., Raikhel N., Somerville S., and Thomashow M. Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiology 106 (1994) 1241-1255
-
(1994)
Plant Physiology
, vol.106
, pp. 1241-1255
-
-
Newman, T.1
De Bruijn, F.J.2
Green, P.3
Keegstra, K.4
Kende, H.5
McIntosh, L.6
Ohlrogge, J.7
Raikhel, N.8
Somerville, S.9
Thomashow, M.10
-
32
-
-
34447549837
-
Predominant culturable Bacillus species in Japanese arable soils and their potential as biocontrol agents
-
Nishimura T., Toyota K., and Mochizuki M. Predominant culturable Bacillus species in Japanese arable soils and their potential as biocontrol agents. Microbes and Environments 20 (2005) 61-68
-
(2005)
Microbes and Environments
, vol.20
, pp. 61-68
-
-
Nishimura, T.1
Toyota, K.2
Mochizuki, M.3
-
33
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn A.M., Moore E.R., and Timmis K.N. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology 2 (2000) 39-50
-
(2000)
Environmental Microbiology
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.2
Timmis, K.N.3
-
34
-
-
0033776093
-
Use of a chiA probe for detection of chitinase genes in bacteria from the Chesapeake Bay (1)
-
Ramaiah N., Hill R.T., Chun J., Ravel J., Matte M.H., Straube W.L., and Colwell R.R. Use of a chiA probe for detection of chitinase genes in bacteria from the Chesapeake Bay (1). FEMS Microbiology Ecology 34 (2000) 63-71
-
(2000)
FEMS Microbiology Ecology
, vol.34
, pp. 63-71
-
-
Ramaiah, N.1
Hill, R.T.2
Chun, J.3
Ravel, J.4
Matte, M.H.5
Straube, W.L.6
Colwell, R.R.7
-
35
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
36
-
-
33646116078
-
Introducing TreeClimber, a test to compare microbial community structures
-
Schloss P.D., and Handelsman J. Introducing TreeClimber, a test to compare microbial community structures. Applied and Environmental Microbiology 72 (2006) 2379-2384
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 2379-2384
-
-
Schloss, P.D.1
Handelsman, J.2
-
37
-
-
0035462376
-
Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment
-
Sessitsch A., Weilharter A., Gerzabek M.H., Kirchmann H., and Kandeler E. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Applied and Environmental Microbiology 67 (2001) 4215-4224
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 4215-4224
-
-
Sessitsch, A.1
Weilharter, A.2
Gerzabek, M.H.3
Kirchmann, H.4
Kandeler, E.5
-
38
-
-
0033229842
-
The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases
-
Suzuki K., Taiyoji M., Sugawara N., Nikaidou N., Henrissat B., and Watanabe T. The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases. Biochemical Journal 343 3 (1999) 587-596
-
(1999)
Biochemical Journal
, vol.343
, Issue.3
, pp. 587-596
-
-
Suzuki, K.1
Taiyoji, M.2
Sugawara, N.3
Nikaidou, N.4
Henrissat, B.5
Watanabe, T.6
-
39
-
-
0031782072
-
A chitin-binding domain in a marine bacterial chitinase and other microbial chitinases: implications for the ecology and evolution of 1,4-beta-glycanases
-
Svitil A.L., and Kirchman D.L. A chitin-binding domain in a marine bacterial chitinase and other microbial chitinases: implications for the ecology and evolution of 1,4-beta-glycanases. Microbiology 144 5 (1998) 1299-1308
-
(1998)
Microbiology
, vol.144
, Issue.5
, pp. 1299-1308
-
-
Svitil, A.L.1
Kirchman, D.L.2
-
40
-
-
0141788244
-
Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice
-
Tan Z., Hurek T., and Reinhold-Hurek B. Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice. Environmental Microbiology 5 (2003) 1009-1015
-
(2003)
Environmental Microbiology
, vol.5
, pp. 1009-1015
-
-
Tan, Z.1
Hurek, T.2
Reinhold-Hurek, B.3
-
41
-
-
12444293836
-
Monitoring the microbial population dynamics at the start-up stage of wastewater treatment reactor by terminal restriction fragment length polymorphism analysis based on 16S rDNA and rRNA gene sequences
-
Terahara T., Hoshino T., Tsuneda S., Hirata A., and Inamori Y. Monitoring the microbial population dynamics at the start-up stage of wastewater treatment reactor by terminal restriction fragment length polymorphism analysis based on 16S rDNA and rRNA gene sequences. Journal of Bioscience and Bioengineering 98 (2004) 425-428
-
(2004)
Journal of Bioscience and Bioengineering
, vol.98
, pp. 425-428
-
-
Terahara, T.1
Hoshino, T.2
Tsuneda, S.3
Hirata, A.4
Inamori, Y.5
-
42
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
43
-
-
0029945715
-
Production and processing of a 59-kilodalton exochitinase during growth of Streptomyces lividans carrying pCHIO12 in soil microcosms amended with crab or fungal chitin
-
Vionis A.P., Niemeyer F., Karagouni A.D., and Schrempf H. Production and processing of a 59-kilodalton exochitinase during growth of Streptomyces lividans carrying pCHIO12 in soil microcosms amended with crab or fungal chitin. Applied and Environmental Microbiology 62 (1996) 1774-1780
-
(1996)
Applied and Environmental Microbiology
, vol.62
, pp. 1774-1780
-
-
Vionis, A.P.1
Niemeyer, F.2
Karagouni, A.D.3
Schrempf, H.4
-
44
-
-
34249885115
-
Phylogenetic composition of rocky mountain endolithic microbial ecosystems
-
Walker J.J., and Pace N.R. Phylogenetic composition of rocky mountain endolithic microbial ecosystems. Applied and Environmental Microbiology 73 (2007) 3497-3504
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 3497-3504
-
-
Walker, J.J.1
Pace, N.R.2
-
45
-
-
0034450921
-
Molecular detection of bacterial and streptomycete chitinases in the environment
-
Williamson N., Brian P., and Wellington E.M. Molecular detection of bacterial and streptomycete chitinases in the environment. Antonie Van Leeuwenhoek 78 (2000) 315-321
-
(2000)
Antonie Van Leeuwenhoek
, vol.78
, pp. 315-321
-
-
Williamson, N.1
Brian, P.2
Wellington, E.M.3
-
46
-
-
2142761510
-
Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
-
Wolsing M., and Prieme A. Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiology Ecology 48 (2004) 261-271
-
(2004)
FEMS Microbiology Ecology
, vol.48
, pp. 261-271
-
-
Wolsing, M.1
Prieme, A.2
|