-
2
-
-
0034467820
-
Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
-
Cho J-C, Tiedje JM. (2000). Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66: 5448-5456.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5448-5456
-
-
Cho, J.-C.1
Tiedje, J.M.2
-
3
-
-
33644845577
-
Everything is everywhere, but, the environment selects,; What did Baas Becking and Beijerinck really say?
-
de Wit R, Bouvier T. (2006). ,Everything is everywhere, but, the environment selects,; what did Baas Becking and Beijerinck really say? Environ Microbiol 8: 755-758.
-
(2006)
Environ Microbiol
, vol.8
, pp. 755-758
-
-
De Wit, R.1
Bouvier, T.2
-
4
-
-
85007110786
-
Arlequin (version 3.0): An integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S. (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
-
(2005)
Evol Bioinform Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
5
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data
-
Excoffier L, Smouse PE, Quattro JM. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data. Genetics 131: 479-491.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
6
-
-
4043087606
-
The ubiquity of small species: Patterns of local and global diversity
-
Fenchel T, Finlay BJ. (2004). The ubiquity of small species: patterns of local and global diversity. Bioscience 54: 777-784.
-
(2004)
Bioscience
, vol.54
, pp. 777-784
-
-
Fenchel, T.1
Finlay, B.J.2
-
7
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer N, Jackson RB. (2006). The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103: 626-631.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
8
-
-
33745282399
-
DsrB gene-based DGGE for community and diversity surveys of sulfatereducing bacteria
-
Geets J, Borrernans B, Diels L, Springael D, Vangronsveld J, van der Lelie D et al. (2006). DsrB gene-based DGGE for community and diversity surveys of sulfatereducing bacteria. J Microbiol Methods 66: 194-205.
-
(2006)
J Microbiol Methods
, vol.66
, pp. 194-205
-
-
Geets, J.1
Borrernans, B.2
Diels, L.3
Springael, D.4
Vangronsveld, J.5
Van Der Lelie, D.6
-
9
-
-
35948933458
-
The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection
-
Gray ND, Brown A, Nelson DR, Pickup RW, Rowan AK, Head IM. (2007). The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection. ISME J 1: 596-605.
-
(2007)
ISME J
, vol.1
, pp. 596-605
-
-
Gray, N.D.1
Brown, A.2
Nelson, D.R.3
Pickup, R.W.4
Rowan, A.K.5
Head, I.M.6
-
10
-
-
3042701611
-
Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria
-
Gray ND, Comaskey D, Miskin IP, Pickup RW, Suzuki K, Head IM. (2004). Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria. Environ Microbiol 6: 669-677.
-
(2004)
Environ Microbiol
, vol.6
, pp. 669-677
-
-
Gray, N.D.1
Comaskey, D.2
Miskin, I.P.3
Pickup, R.W.4
Suzuki, K.5
Head, I.M.6
-
11
-
-
33747174849
-
Spatial scaling of microbial biodiversity
-
Green J, Bohannan BJ. (2006). Spatial scaling of microbial biodiversity. Trends Ecol Evol 21: 501-507.
-
(2006)
Trends Ecol Evol
, vol.21
, pp. 501-507
-
-
Green, J.1
Bohannan, B.J.2
-
12
-
-
44449118067
-
Microbial biogeography: From taxonomy to traits
-
Green JL, Bohannan BJ, Whitaker RJ. (2008). Microbial biogeography: from taxonomy to traits. Science 320: 1039-1043.
-
(2008)
Science
, vol.320
, pp. 1039-1043
-
-
Green, J.L.1
Bohannan, B.J.2
Whitaker, R.J.3
-
13
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green JL, Holmes AJ, Westoby M, Oliver I, Briscoe D, Dangerfield M et al. (2004). Spatial scaling of microbial eukaryote diversity. Nature 432: 747-750.
-
(2004)
Nature
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Dangerfield, M.6
-
14
-
-
33751256288
-
Sequences, sequence clusters and bacterial species
-
Hanage WP, Fraser C, Spratt BG. (2006). Sequences, sequence clusters and bacterial species. Phil Trans R Soc B 361: 1917-1927.
-
(2006)
Phil Trans R Soc B
, vol.361
, pp. 1917-1927
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
15
-
-
35348955355
-
Genotypic distribution of an indigenous model microorganism along an estuarine gradient
-
Hawkins RJ, Purdy KJ. (2007). Genotypic distribution of an indigenous model microorganism along an estuarine gradient. FEMS Microbiol Ecol 62: 187-194.
-
(2007)
FEMS Microbiol Ecol
, vol.62
, pp. 187-194
-
-
Hawkins, R.J.1
Purdy, K.J.2
-
16
-
-
72649088602
-
Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge
-
Hesselsoe M, Fureder S, Schloter M, Bodrossy L, Iversen N, Roslev P et al. (2009). Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge. ISME J 3: 1349-1364.
-
(2009)
ISME J
, vol.3
, pp. 1349-1364
-
-
Hesselsoe, M.1
Fureder, S.2
Schloter, M.3
Bodrossy, L.4
Iversen, N.5
Roslev, P.6
-
18
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP. (2001). Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
19
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. (2008). Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085.
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
Preheim, S.P.4
Alm, E.J.5
Polz, M.F.6
-
20
-
-
0019999242
-
Mineralization of organic matter in the sea bed-the role of sulfate reduction
-
Jorgensen BB. (1982). Mineralization of organic matter in the sea bed-the role of sulfate reduction. Nature 296: 643-645.
-
(1982)
Nature
, vol.296
, pp. 643-645
-
-
Jorgensen, B.B.1
-
21
-
-
0034810541
-
Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing Prokaryotes
-
Klein M, Friedrich M, Roger AJ, Hugenholtz P, Fishbain S, Abicht H et al. (2001). Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing Prokaryotes. J Bacteriol 183: 6028-6035.
-
(2001)
J Bacteriol
, vol.183
, pp. 6028-6035
-
-
Klein, M.1
Friedrich, M.2
Roger, A.J.3
Hugenholtz, P.4
Fishbain, S.5
Abicht, H.6
-
22
-
-
40649125049
-
Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
-
Koeppel A, Perry EB, Sikorski J, Krizanc D, Warner A, Ward DM et al. (2008). Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics. Proc Natl Acad Sci USA 105: 2504-2509.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 2504-2509
-
-
Koeppel, A.1
Perry, E.B.2
Sikorski, J.3
Krizanc, D.4
Warner, A.5
Ward, D.M.6
-
23
-
-
0020443640
-
Alcohol conversions by Desulfobulbus propionicus Lindhorst in the presence and absence of sulfate and hydrogen
-
Laanbroek HJ, Abee T, Voogd IL. (1982). Alcohol conversions by Desulfobulbus propionicus Lindhorst in the presence and absence of sulfate and hydrogen. Arch Microbiol 133: 178-184.
-
(1982)
Arch Microbiol
, vol.133
, pp. 178-184
-
-
Laanbroek, H.J.1
Abee, T.2
Voogd, I.L.3
-
24
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
25
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar et al. (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Yadhukumar, M.H.5
-
26
-
-
44849139426
-
Niche differentiation among sulfur-oxidizing bacterial populations in cave waters
-
Macalady JL, Dattagupta S, Schaperdoth I, Jones DS, Druschel GK, Eastman D. (2008). Niche differentiation among sulfur-oxidizing bacterial populations in cave waters. ISME J 2: 590-601.
-
(2008)
ISME J
, vol.2
, pp. 590-601
-
-
MacAlady, J.L.1
Dattagupta, S.2
Schaperdoth, I.3
Jones, D.S.4
Druschel, G.K.5
Eastman, D.6
-
27
-
-
0035972889
-
Sexual isolation in bacteria
-
Majewski J. (2001). Sexual isolation in bacteria. FEMS Microbiol Lett 199: 161-169.
-
(2001)
FEMS Microbiol Lett
, vol.199
, pp. 161-169
-
-
Majewski, J.1
-
28
-
-
0036324293
-
Phylogenetic approaches for describing and comparing the diversity of microbial communities
-
Martin AP. (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-3682.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3673-3682
-
-
Martin, A.P.1
-
29
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, Staley JT. (2006). Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreås, L.13
Reysenbach, A.L.14
Smith, V.H.15
Staley, J.T.16
-
30
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, De Waal EC, Uitterlinden AG. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
32
-
-
34247221045
-
Essay-The role of ecological theory in microbial ecology
-
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP et al. (2007). Essay-The role of ecological theory in microbial ecology. Nat Rev Microbiol 5: 384-392.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.M.2
Curtis, T.P.3
Ellis, R.J.4
Firestone, M.K.5
Freckleton, R.P.6
-
33
-
-
0029759760
-
Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
-
Purdy KJ, Embley TM, TakII S, Nedwell DB. (1996). Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl Environ Microbiol 62: 3905-3907.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3905-3907
-
-
Purdy, K.J.1
Embley, T.M.2
Takii, S.3
Nedwell, D.B.4
-
34
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
35
-
-
0036422779
-
Origins and diversification of sulfate-respiring microorganisms
-
Stahl DA, Fishbain S, Klein M, Baker BJ, Wagner M. (2002). Origins and diversification of sulfate-respiring microorganisms. Antonie Van Leeuwenhoek 81: 189-195.
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 189-195
-
-
Stahl, D.A.1
Fishbain, S.2
Klein, M.3
Baker, B.J.4
Wagner, M.5
-
36
-
-
38049100699
-
The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales
-
Van der Gucht K, Cottenie K, Muylaert K, Vloemans N, Cousin S, Declerck S et al. (2007). The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. Proc Natl Acad Sci USA 104: 20404-20409.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 20404-20409
-
-
Van Der Gucht, K.1
Cottenie, K.2
Muylaert, K.3
Vloemans, N.4
Cousin, S.5
Declerck, S.6
-
37
-
-
0032463021
-
Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
-
Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA. (1998). Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180: 2975-2982.
-
(1998)
J Bacteriol
, vol.180
, pp. 2975-2982
-
-
Wagner, M.1
Roger, A.J.2
Flax, J.L.3
Brusseau, G.A.4
Stahl, D.A.5
-
38
-
-
0033012306
-
Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
-
West NJ, Scanlan DJ. (1999). Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol 65: 2585-2591.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2585-2591
-
-
West, N.J.1
Scanlan, D.J.2
-
39
-
-
0042242559
-
Geographic barriers isolate endemic populations of hyperthermophilic archaea
-
Whitaker RJ, Grogan DW, Taylor JW. (2003). Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978.
-
(2003)
Science
, vol.301
, pp. 976-978
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
40
-
-
12244257532
-
Geographic and environmental sources of variation in lake bacterial community composition
-
Yannarell AC, Triplett EW. (2005). Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol 71: 227-239.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 227-239
-
-
Yannarell, A.C.1
Triplett, E.W.2
-
41
-
-
14644402378
-
Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited
-
Zverlov V, Klein M, Lucker S, Friedrich MW, Kellermann J, Stahl DA et al. (2005). Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J Bacteriol 187: 2203-2208.
-
(2005)
J Bacteriol
, vol.187
, pp. 2203-2208
-
-
Zverlov, V.1
Klein, M.2
Lucker, S.3
Friedrich, M.W.4
Kellermann, J.5
Stahl, D.A.6
|