Modulation of the major paths of carbon in photorespiratory mutants of Synechocystis

PLoS ONE

Volumn 6, Issue 1, 2011, Pages

  Huege, Jan ^a   Goetze, Jan ^b   Schwarz, Doreen ^c   Bauwe, Hermann ^c   Hagemann, Martin ^c   Kopka, Joachim ^d  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b UNIVERSITY OF POTSDAM   (Germany)

^c UNIVERSITY OF ROSTOCK   (Germany)

^d MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACID; CARBON; CARBON 13; CARBON DIOXIDE; CARBOXYLASE; CITRIC ACID; GLUCOSE 6 PHOSPHATE; GLYCINE; GLYCOLIC ACID; MALIC ACID; SODIUM CARBONATE; SUCROSE; GLYCOLIC ACID DERIVATIVE;

ARTICLE; BACTERIAL CELL; BACTERIAL METABOLISM; BACTERIUM CULTURE; BACTERIUM MUTANT; BIOACCUMULATION; CARBON METABOLISM; CELL LABELING; CONTROLLED STUDY; ENRICHMENT CULTURE; METABOLIC REGULATION; NONHUMAN; PHOTORESPIRATION; SYNECHOCYSTIS; ELECTRON TRANSPORT; GENETICS; METABOLISM; PHOTOSYNTHESIS;

SYNECHOCYSTIS; SYNECHOCYSTIS SP. PCC 6803;

CARBON; CARBON DIOXIDE; CARBON ISOTOPES; ELECTRON TRANSPORT; GLYCOLATES; METABOLIC NETWORKS AND PATHWAYS; PHOTOSYNTHESIS; SYNECHOCYSTIS;

EID: 79251614418     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016278     Document Type: Article

References (40)

1. Knoll AH (2008) Cyanobacteria and earth history. In: Herrero A, Flores E, eds. The cyanobacteria: molecular biology, genomics and evolution. Norfolk: Caister Academic Press. pp 1-19.
2. Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, et al. (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A 99: 12246-12251.
3. Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, et al. (2008) Genes of cyanobacterial origin in plant nuclear genomes point to a heterocystforming plastid ancestor. Mol Biol Evol 25: 748-61.
4. Tolbert NE (1997) The C-2 oxidative photosynthetic carbon cycle. Ann Rev Plant Physiol Plant Mol Biol 48: 1-25.
5. Kelly GJ, Latzko E (1977) Chloroplast phosphofructokinase: II. Partial purification, kinetic and regulatory properties. Plant Physiol 60: 295-299.
6. Husic DW, Husic HD, Tolbert NE (1987) The oxidative photosynthetic carbon cycle or C2 cycle. CRC Crit Rev Plant Sci 5: 45-100.
7. Norman EG, Colman B (1991) Purification and characterization of phosphoglycolate phosphatase from the cyanobacterium Coccochloris peniocystis. Plant Physiol 95: 693-698.
8. Somerville CR (2001) An early Arabidopsis demonstration. Resolving a few issues concerning photorespiration. Plant Physiol 125: 20-24.
9. 2 labeling. J Magn Reson 178: 1-10.
10. Bauwe H (2010) Recent developments in photorespiration research. Biochem Soc Trans 38: 677-682.
11. Colman B (1989) Photosynthetic carbon assimilation and the suppression of photorespiration in the cyanobacteria. Aquat Bot 34: 211-231.
12. 2 concentrating mechanisms in photosynthetic microorganisms. Ann Rev Plant Physiol Plant Mol Biol 50: 539-570.
13. Eisenhut M, Kahlon S, Hasse D, Ewald R, Lieman-Hurwitz J, et al. (2006) The plant-like C2 glycolate cycle and the bacterial-like glycerate pathway cooperate in phosphoglycolate metabolism in cyanobacteria. Plant Physiol 142: 333-342.
14. Eisenhut M, Ruth W, Haimovich M, Bauwe H, Kaplan A, et al. (2008) The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc Natl Acad Sci U S A 105: 17199-17204.
15. Eisenhut M, Huege J, Schwarz D, Bauwe H, Kopka J, et al. (2008) Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol 148: 2109-2120.
16. Eisenhut M, von Wobeser EA, Jonas L, Schubert H, Ibelings BW, et al. (2007) Long-term response toward inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol 144: 1946-1959.
17. 2)-labelling. Phytochem 68: 2258-2272.
18. Ratcliffe RG, Shachar-Hill Y (2006) Measuring multiple fluxes through plant metabolic networks. Plant J 45: 490-511.
19. Shastri AA, Morgan JA (2007) A transient isotopic labeling methodology for C-13 metabolic flux analysis of photoautotrophic microorganisms. Phytochem 68: 2302-2312.
20. Döhler G (1974) C4-Weg der Photosynthese in der Blaualge Anacystis nidulans (The C4-path of photosynthesis in the cyanobacterium Anacystis nidulans) Planta 118: 259-269.
21. Maheswaran M, Ziegler K, Lockau W, Hagemann M, Forchhammer K (2006) PII-regulated arginine synthesis controls accumulation of cyanophycin in Synechocystis sp. strain PCC 6803. J Bacteriol 188: 2730-2734.
22. Calvin M (1956) The photosynthetic carbon cycle. J Chem Soc. pp 1895-1915.
23. Calvin M (1961) The path of carbon in photosynthesis. In: Nobel lectures, chemistry 1942-1962. Amsterdam: Elsevier Publishing Company. pp 618-644.
24. Tabita FR (1988) Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms. Microbiol Rev 52: 155-189.
25. 2 fixation: fait accompli. Proc Natl Acad Sci U S A 106: 21015-21016.
26. Agarwal R, Ortlebb S, Sainisa JK, Melzer M (2009) Immunoelectron microscopy for locating Calvin cycle enzymes in the thylakoids of Synechocystis 6803. Molec Plant 2: 32-42.
27. Yang C, Hua Q, Shimizu K (2002) Metabolic flux analysis in Synechocystis using isotope distribution from C-13-labeled glucose. Met Engin 4: 202-216.
28. Hagemann M, Vinnemeier J, Oberpichler I, Boldt R, Bauwe H (2005) The glycine decarboxylase complex is not essential for the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Biol 7: 15-22.
29. Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111: 1-16.
30. Erban A, Schauer N, Fernie AR, Kopka J (2007) Non-supervised construction and application of mass spectral and retention time index libraries from time-offlight GC-MS metabolite profiles. Methods Mol Biol 358: 19-38.
31. Krall L, Huege J, Catchpole G, Steinhauser D, Willmitzer L (2009) Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria. J Chromatogr B 877: 2952-2960.
32. Schauer N, Zamir D, Fernie AR (2005) Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. J Exp Bot 56: 297-307.
33. Luedemann A, Strassburg K, Erban A, Kopka J (2008) TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS) based metabolite profiling experiments. Bioinform 24: 732-737.
34. Kopka J, Schauer N, Krueger S, Birkemeyer C, Usadel B, et al. (2005) GMD@CSB.DB: the Golm Metabolome Database. Bioinform 21: 1635-1638.
35. Hummel J, Strehmel N, Selbig J, Walther D, Kopka J (2010) Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6: 322-333.
36. Wittmann C, Heinzle E (1999) Mass spectrometry for metabolic flux analysis. Biotech Bioeng 62: 739-750.
37. van Winden WA, Wittmann C, Heinzle E, Heijnen J (2002) Correcting mass isotopomer distributions for naturally occurring isotopes. Biotech Bioeng 80: 477-479.
38. Wolfe RR, Chinkes DL (2004) Calculation of substance kinetics: single pool model. In: Isotope tracers in metabolic research: principles and practice of kinetic analysis, 2nd edition. Hoboken: John Wiley & Sons. pp 21-50.
39. 13C labelled isotopes. Plant J 39: 668-679.
40. Allwood JW, Erban A, de Koning S, Dunn WB, Luedemann A, et al. (2009) Inter-laboratory reproducibility of fast gas chromatography-electron impact- time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5: 479-496.