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Volumn 68, Issue 16-18, 2007, Pages 2258-2272

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

Author keywords

13C carbon; 13CO2 carbondioxide; Arabidopsis thaliana Col 0; Dynamic flux analysis; Electron impact ionization (EI); Gas chromatography (GC); Metabolite profiling; Oryza sativa IR57111; Stable isotope dilution; Time of flight mass spectrometry (TOF MS)

Indexed keywords

CARBON; CARBON DIOXIDE;

EID: 34547675713     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2007.03.026     Document Type: Article
Times cited : (96)

References (46)
  • 1
    • 0015949703 scopus 로고
    • Femtomole level of analysis of biogenic amines and amino acids using functional group mass spectrometry
    • Abramson F.P., McCaman M.W., and McCaman R.E. Femtomole level of analysis of biogenic amines and amino acids using functional group mass spectrometry. Anal. Biochem. 57 2 (1974) 482-499
    • (1974) Anal. Biochem. , vol.57 , Issue.2 , pp. 482-499
    • Abramson, F.P.1    McCaman, M.W.2    McCaman, R.E.3
  • 3
    • 0014755179 scopus 로고
    • Trimethylsilylation of amino acids. 1. Study of glycine and lysine TMS derivatives with gas-liquid chromatography-mass spectrometry
    • Bergström K., Gürtler J., and Blomstrand R. Trimethylsilylation of amino acids. 1. Study of glycine and lysine TMS derivatives with gas-liquid chromatography-mass spectrometry. Anal. Biochem. 34 1 (1970) 74-87
    • (1970) Anal. Biochem. , vol.34 , Issue.1 , pp. 74-87
    • Bergström, K.1    Gürtler, J.2    Blomstrand, R.3
  • 4
    • 0037453479 scopus 로고    scopus 로고
    • Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones
    • Birkemeyer C., Kolasa A., and Kopka J. Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. J. Chromatogr. A 993 (2003) 89-102
    • (2003) J. Chromatogr. A , vol.993 , pp. 89-102
    • Birkemeyer, C.1    Kolasa, A.2    Kopka, J.3
  • 5
    • 11344249260 scopus 로고    scopus 로고
    • Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling
    • Birkemeyer C., Luedemann A., Wagner C., Erban A., and Kopka J. Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling. Trends Biotechnol. 23 (2005) 28-33
    • (2005) Trends Biotechnol. , vol.23 , pp. 28-33
    • Birkemeyer, C.1    Luedemann, A.2    Wagner, C.3    Erban, A.4    Kopka, J.5
  • 7
    • 0002340038 scopus 로고
    • The photosynthetic carbon cycle
    • Calvin M. The photosynthetic carbon cycle. J. Chem. Soc. (1956) 1895-1915
    • (1956) J. Chem. Soc. , pp. 1895-1915
    • Calvin, M.1
  • 8
    • 34547699464 scopus 로고
    • The path of carbon in photosynthesis
    • Elsevier Publishing Company, Amsterdam
    • Calvin M. The path of carbon in photosynthesis. Nobel Lectures Chemistry 1942-1962 (1964), Elsevier Publishing Company, Amsterdam 618-644
    • (1964) Nobel Lectures Chemistry 1942-1962 , pp. 618-644
    • Calvin, M.1
  • 9
    • 0034233268 scopus 로고    scopus 로고
    • GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing
    • Dauner M., and Sauer U. GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing. Biotechnol. Prog. 16 (2000) 642-649
    • (2000) Biotechnol. Prog. , vol.16 , pp. 642-649
    • Dauner, M.1    Sauer, U.2
  • 10
    • 33947300801 scopus 로고
    • Analysis of trimethylsilyl derivatives of carbohydrates by gas chromatography and mass spectrometry
    • DeJongh D.C., Radford T., Hribar J.D., Hanessia S., Bieber M., Dawson G., and Sweeley C.C. Analysis of trimethylsilyl derivatives of carbohydrates by gas chromatography and mass spectrometry. J. Am. Chem. Soc. 91 7 (1969) 1728-1740
    • (1969) J. Am. Chem. Soc. , vol.91 , Issue.7 , pp. 1728-1740
    • DeJongh, D.C.1    Radford, T.2    Hribar, J.D.3    Hanessia, S.4    Bieber, M.5    Dawson, G.6    Sweeley, C.C.7
  • 11
    • 20444439241 scopus 로고    scopus 로고
    • Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions
    • Desbrosses G.G., Kopka J., and Udvardi M.K. Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiol. 137 4 (2005) 1302-1318
    • (2005) Plant Physiol. , vol.137 , Issue.4 , pp. 1302-1318
    • Desbrosses, G.G.1    Kopka, J.2    Udvardi, M.K.3
  • 12
    • 38949205718 scopus 로고    scopus 로고
    • Non-supervised construction and application of mass spectral and retention time index libraries from time-of-flight GC-MS metabolite profiles
    • Weckwerth W. (Ed), Humana Press, Totowa
    • Erban A., Schauer N., Fernie A.R., and Kopka J. Non-supervised construction and application of mass spectral and retention time index libraries from time-of-flight GC-MS metabolite profiles. In: Weckwerth W. (Ed). Metabolomics: Methods and Protocols (2006), Humana Press, Totowa 19-38
    • (2006) Metabolomics: Methods and Protocols , pp. 19-38
    • Erban, A.1    Schauer, N.2    Fernie, A.R.3    Kopka, J.4
  • 14
    • 14744267531 scopus 로고    scopus 로고
    • Flux an important, but neglected, component of functional genomics
    • Fernie A.R., Geigenberger P., and Stitt M. Flux an important, but neglected, component of functional genomics. Curr. Opin. Plant Sci. 8 (2005) 174-182
    • (2005) Curr. Opin. Plant Sci. , vol.8 , pp. 174-182
    • Fernie, A.R.1    Geigenberger, P.2    Stitt, M.3
  • 16
    • 0034254574 scopus 로고    scopus 로고
    • Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry
    • Fiehn O., Kopka J., Trethewey R.N., and Willmitzer L. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Anal. Chem. 72 (2000) 3573-3580
    • (2000) Anal. Chem. , vol.72 , pp. 3573-3580
    • Fiehn, O.1    Kopka, J.2    Trethewey, R.N.3    Willmitzer, L.4
  • 17
    • 0031251837 scopus 로고    scopus 로고
    • Maximal biomass of Arabidopsis thaliana using a simple, low-maintenance hydroponic method and favorable environmental conditions
    • Gibeaut D.M., Hulett J., Cramer G.R., and Seemann J.R. Maximal biomass of Arabidopsis thaliana using a simple, low-maintenance hydroponic method and favorable environmental conditions. Plant Physiol. 115 2 (1997) 317-319
    • (1997) Plant Physiol. , vol.115 , Issue.2 , pp. 317-319
    • Gibeaut, D.M.1    Hulett, J.2    Cramer, G.R.3    Seemann, J.R.4
  • 18
    • 14744280370 scopus 로고    scopus 로고
    • A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
    • Gibon Y., Blaesing O.E., Hannemann J., Carillo P., Hohne M., Hendriks J.H.M., Palacios N., Cross J., Selbig J., and Stitt M. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16 12 (2004) 3304-3325
    • (2004) Plant Cell , vol.16 , Issue.12 , pp. 3304-3325
    • Gibon, Y.1    Blaesing, O.E.2    Hannemann, J.3    Carillo, P.4    Hohne, M.5    Hendriks, J.H.M.6    Palacios, N.7    Cross, J.8    Selbig, J.9    Stitt, M.10
  • 19
    • 33749120080 scopus 로고    scopus 로고
    • Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
    • Art. 76
    • Gibon Y., Usadel B., Blaesing O.E., Kamlage B., Hoehne M., Trethewey R., and Stitt M. Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol. 7 8 (2006) Art. 76
    • (2006) Genome Biol. , vol.7 , Issue.8
    • Gibon, Y.1    Usadel, B.2    Blaesing, O.E.3    Kamlage, B.4    Hoehne, M.5    Trethewey, R.6    Stitt, M.7
  • 21
    • 0042825675 scopus 로고    scopus 로고
    • Systematic quantification of complex metabolic flux networks using stable isotopes and mass spectrometry
    • Klapa M.I., Aon J.-C., and Stephanopoulos G. Systematic quantification of complex metabolic flux networks using stable isotopes and mass spectrometry. Eur. J. Biochem. 270 (2003) 3525-3542
    • (2003) Eur. J. Biochem. , vol.270 , pp. 3525-3542
    • Klapa, M.I.1    Aon, J.-C.2    Stephanopoulos, G.3
  • 22
    • 85015214998 scopus 로고    scopus 로고
    • Gas chromatography mass spectrometry
    • Biotechnology in Agriculture and Forestry. Nagata T., Lörz H., and Widholm J.M. (Eds). Saito K., Dixon R.A., and Willmitzer L. (Eds), Springer-Verlag, Berlin, Heidelberg, New York
    • Kopka J. Gas chromatography mass spectrometry. In: Nagata T., Lörz H., and Widholm J.M. (Eds). Biotechnology in Agriculture and Forestry. In: Saito K., Dixon R.A., and Willmitzer L. (Eds). Plant Metabolomics vol. 57 (2006), Springer-Verlag, Berlin, Heidelberg, New York 3-20
    • (2006) Plant Metabolomics , vol.57 , pp. 3-20
    • Kopka, J.1
  • 23
    • 33744525340 scopus 로고    scopus 로고
    • Current challenges and developments in GC-MS based metabolite profiling technology
    • Kopka J. Current challenges and developments in GC-MS based metabolite profiling technology. J. Biotechnol. 124 (2006) 312-322
    • (2006) J. Biotechnol. , vol.124 , pp. 312-322
    • Kopka, J.1
  • 25
    • 0001707952 scopus 로고
    • O-Methyl oximes of sugars - analysis of O-trimethylsilyl derivatives by gas-liquid chromatography and mass spectrometry
    • Laine R.A., and Sweeley C.C. O-Methyl oximes of sugars - analysis of O-trimethylsilyl derivatives by gas-liquid chromatography and mass spectrometry. Carbohydr. Res. 27 1 (1973) 199-213
    • (1973) Carbohydr. Res. , vol.27 , Issue.1 , pp. 199-213
    • Laine, R.A.1    Sweeley, C.C.2
  • 26
    • 0000566952 scopus 로고
    • Complete mass-spectra of per-trimethylsilylated amino-acids
    • Leimer K.R., Rice R.H., and Gehrke C.W. Complete mass-spectra of per-trimethylsilylated amino-acids. J. Chromatogr. 141 3 (1977) 355-375
    • (1977) J. Chromatogr. , vol.141 , Issue.3 , pp. 355-375
    • Leimer, K.R.1    Rice, R.H.2    Gehrke, C.W.3
  • 27
    • 34248580879 scopus 로고    scopus 로고
    • Gas chromatography mass spectrometry-based metabolite profiling in plants
    • Lisec J., Schauer N., Kopka J., Willmitzer L., and Fernie A.R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat. Protocols 1 (2006) 387-396
    • (2006) Nat. Protocols , vol.1 , pp. 387-396
    • Lisec, J.1    Schauer, N.2    Kopka, J.3    Willmitzer, L.4    Fernie, A.R.5
  • 28
    • 0034977282 scopus 로고    scopus 로고
    • Mass spectrometric studies of the path of carbon in photosynthesis: positional isotopic analysis of C-13-labelled C-4 to C-7 sugar phosphates
    • MacLeod J.K., Flanigan I.L., Williams J.F., and Collins J.G. Mass spectrometric studies of the path of carbon in photosynthesis: positional isotopic analysis of C-13-labelled C-4 to C-7 sugar phosphates. J. Mass Spectrom. 36 5 (2001) 500-508
    • (2001) J. Mass Spectrom. , vol.36 , Issue.5 , pp. 500-508
    • MacLeod, J.K.1    Flanigan, I.L.2    Williams, J.F.3    Collins, J.G.4
  • 29
    • 33644853940 scopus 로고    scopus 로고
    • Measuring multiple fluxes through plant metabolic networks
    • Ratcliffe R.G., and Shachar-Hill Y. Measuring multiple fluxes through plant metabolic networks. Plant J. 45 4 (2006) 490-511
    • (2006) Plant J. , vol.45 , Issue.4 , pp. 490-511
    • Ratcliffe, R.G.1    Shachar-Hill, Y.2
  • 30
    • 0034218717 scopus 로고    scopus 로고
    • Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry
    • Roessner U., Wagner C., Kopka J., Trethewey R.N., and Willmitzer L. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J. 23 (2000) 131-142
    • (2000) Plant J. , vol.23 , pp. 131-142
    • Roessner, U.1    Wagner, C.2    Kopka, J.3    Trethewey, R.N.4    Willmitzer, L.5
  • 31
    • 0035105106 scopus 로고    scopus 로고
    • Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems
    • Roessner U., Luedemann A., Brust D., Fiehn O., Linke T., Willmitzer L., and Fernie A.R. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13 1 (2001) 11-29
    • (2001) Plant Cell , vol.13 , Issue.1 , pp. 11-29
    • Roessner, U.1    Luedemann, A.2    Brust, D.3    Fiehn, O.4    Linke, T.5    Willmitzer, L.6    Fernie, A.R.7
  • 32
    • 0141787875 scopus 로고    scopus 로고
    • Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development
    • Roessner-Tunali U., Hegemann B., Lytovchenko A., Carrari F., Bruedigam C., Granot D., and Fernie A.R. Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol. 133 1 (2003) 84-99
    • (2003) Plant Physiol. , vol.133 , Issue.1 , pp. 84-99
    • Roessner-Tunali, U.1    Hegemann, B.2    Lytovchenko, A.3    Carrari, F.4    Bruedigam, C.5    Granot, D.6    Fernie, A.R.7
  • 33
    • 4143116713 scopus 로고    scopus 로고
    • Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in C-13 labelled isotopes
    • Roessner-Tunali U., Liu J.L., Leisse A., Balbo I., Perez-Melis A., Willmitzer L., and Fernie A.R. Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in C-13 labelled isotopes. Plant J. 39 4 (2004) 668-679
    • (2004) Plant J. , vol.39 , Issue.4 , pp. 668-679
    • Roessner-Tunali, U.1    Liu, J.L.2    Leisse, A.3    Balbo, I.4    Perez-Melis, A.5    Willmitzer, L.6    Fernie, A.R.7
  • 34
    • 0036850201 scopus 로고    scopus 로고
    • Characterization of O-trimethylsilyl oximes of disaccharides by gas chromatography-mass spectrometry
    • Sanz M.L., Sanz J., and Martinez-Castro I. Characterization of O-trimethylsilyl oximes of disaccharides by gas chromatography-mass spectrometry. Chromatographia 56 (2002) 617-622
    • (2002) Chromatographia , vol.56 , pp. 617-622
    • Sanz, M.L.1    Sanz, J.2    Martinez-Castro, I.3
  • 36
    • 0000202925 scopus 로고
    • Characterization of photorespiration in intact leaves using C-13 dioxide labeling
    • Schaefer J., Kier L.D., and Stejskal E.O. Characterization of photorespiration in intact leaves using C-13 dioxide labeling. Plant Physiol. 65 2 (1980) 254-259
    • (1980) Plant Physiol. , vol.65 , Issue.2 , pp. 254-259
    • Schaefer, J.1    Kier, L.D.2    Stejskal, E.O.3
  • 38
    • 13244297050 scopus 로고    scopus 로고
    • Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex
    • Schauer N., Zamir D., and Fernie A.R. Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. J. Exp. Bot. 56 410 (2005) 297-307
    • (2005) J. Exp. Bot. , vol.56 , Issue.410 , pp. 297-307
    • Schauer, N.1    Zamir, D.2    Fernie, A.R.3
  • 39
    • 10644266747 scopus 로고    scopus 로고
    • Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
    • Schwender J., Goffman F., Ohlrogge J.B., and Shachar-Hill Y. Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432 7018 (2004) 779-782
    • (2004) Nature , vol.432 , Issue.7018 , pp. 779-782
    • Schwender, J.1    Goffman, F.2    Ohlrogge, J.B.3    Shachar-Hill, Y.4
  • 40
    • 2442582462 scopus 로고    scopus 로고
    • Trends in chemometric analysis of comprehensive two-dimensional separations
    • Sinha A.E., Prazen B.J., and Synovec R.E. Trends in chemometric analysis of comprehensive two-dimensional separations. Anal. Bioanal. Chem. 378 (2004) 1948-1951
    • (2004) Anal. Bioanal. Chem. , vol.378 , pp. 1948-1951
    • Sinha, A.E.1    Prazen, B.J.2    Synovec, R.E.3
  • 41
    • 8444231218 scopus 로고    scopus 로고
    • Algorithm for locating analytes of interest based on mass spectral similarity in GC×GC-TOF-MS data: analysis of metabolites in human infant urine
    • Sinha A.E., Hope J.L., Prazen B.J., Nilsson E.J., Jack R.M., and Synovec R.E. Algorithm for locating analytes of interest based on mass spectral similarity in GC×GC-TOF-MS data: analysis of metabolites in human infant urine. J. Chromatogr. A 1058 (2004) 209-215
    • (2004) J. Chromatogr. A , vol.1058 , pp. 209-215
    • Sinha, A.E.1    Hope, J.L.2    Prazen, B.J.3    Nilsson, E.J.4    Jack, R.M.5    Synovec, R.E.6
  • 42
    • 15044347498 scopus 로고    scopus 로고
    • Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of 13C-labeled primary metabolites
    • van Winden W.A., van Dam J.C., Ras C., Kleijn R.J., Vinke J.L., van Gulik W.M., and Heijnen J.J. Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of 13C-labeled primary metabolites. FEMS Yeast Res. 5 (2005) 559-568
    • (2005) FEMS Yeast Res. , vol.5 , pp. 559-568
    • van Winden, W.A.1    van Dam, J.C.2    Ras, C.3    Kleijn, R.J.4    Vinke, J.L.5    van Gulik, W.M.6    Heijnen, J.J.7
  • 43
    • 0345701915 scopus 로고    scopus 로고
    • Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles
    • Wagner C., Sefkow M., and Kopka J. Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62 6 (2003) 887-900
    • (2003) Phytochemistry , vol.62 , Issue.6 , pp. 887-900
    • Wagner, C.1    Sefkow, M.2    Kopka, J.3
  • 44
    • 0842343470 scopus 로고    scopus 로고
    • 13C flux analysis: mass isotope correction, data consistency checking and precursor relationships
    • 13C flux analysis: mass isotope correction, data consistency checking and precursor relationships. Biotechnol. Bioeng. 85 3 (2004) 259-268
    • (2004) Biotechnol. Bioeng. , vol.85 , Issue.3 , pp. 259-268
    • Wahl, S.A.1    Dauner, M.2    Wiechert, W.3
  • 45
    • 0035002653 scopus 로고    scopus 로고
    • Application of MALDI-TOF MS to lysine-producing Corynebacterium glutamicum. A novel approach for metabolic flux analysis
    • Wittmann C., and Heinzle E. Application of MALDI-TOF MS to lysine-producing Corynebacterium glutamicum. A novel approach for metabolic flux analysis. Eur. J. Biochem. 268 (2001) 2441-2455
    • (2001) Eur. J. Biochem. , vol.268 , pp. 2441-2455
    • Wittmann, C.1    Heinzle, E.2
  • 46
    • 0027949904 scopus 로고
    • Effect of bicarbonate on root-growth and accumulation of organic-acids in Zn-inefficient and Zn-efficient rice cultivars (Oryza sativa L.)
    • Yang X., Romheld V., and Marschner H. Effect of bicarbonate on root-growth and accumulation of organic-acids in Zn-inefficient and Zn-efficient rice cultivars (Oryza sativa L.). Plant Soil 164 (1994) 1-7
    • (1994) Plant Soil , vol.164 , pp. 1-7
    • Yang, X.1    Romheld, V.2    Marschner, H.3


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