A Label-Free, Quadruplex-Based Functional Molecular Beacon (LFG4-MB) for Fluorescence Turn-On Detection of DNA and Nuclease

Chemistry - A European Journal

Volumn 17, Issue 5, 2011, Pages 1635-1641

  Hu, Dan ^a,b   Huang, Zhenzhen ^a,b   Pu, Fang ^a,b   Ren, Jinsong ^a,b   Qu, Xiaogang ^a,b  

^a CHANGCHUN INSTITUTE OF APPLIED CHEMISTRY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

DNA recognition; fluorescent probes; G quadruplex; molecular beacon; nuclease

Indexed keywords

DNA RECOGNITION; FLUORESCENT PROBES; G-QUADRUPLEXES; MOLECULAR BEACON; NUCLEASE;

BINDERS; CHEMICAL MODIFICATION; DNA; DNA SEQUENCES; FLUORESCENCE; PROBES;

NUCLEIC ACIDS;

DEOXYRIBONUCLEASE; DNA; FLUORESCENT DYE; GUANINE QUADRUPLEX;

ARTICLE; BIOASSAY; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; FLUORESCENCE; METABOLISM; NUCLEOTIDE SEQUENCE; SENSITIVITY AND SPECIFICITY; STAINING;

BASE SEQUENCE; BIOLOGICAL ASSAY; DEOXYRIBONUCLEASES; DNA; FLUORESCENCE; FLUORESCENT DYES; G-QUADRUPLEXES; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING;

EID: 79251602122     PISSN: 09476539     EISSN: 15213765     Source Type: Journal    
DOI: 10.1002/chem.201001331     Document Type: Article

References (44)

1. S. Tyagi, F. R. Kramer, Nat. Biotechnol. 1996, 14, 303-308.
2. N. E. Broude, Trends Biotechnol. 2002, 20, 249-256.
3. W. Tan, K. Wang, T. J. Drake, Curr. Opin. Chem. Biol. 2004, 8, 547-553.
4. S. Tyagi, D. P. Bratu, F. R. Kramer, Nat. Biotechnol. 1998, 16, 49-53.
5. B. Dubertret, M. Calame, A. J. Libchaber, Nat. Biotechnol. 2001, 19, 365-370.
6. R. Yang, J. Jin, Y. Chen, N. Shao, H. Kang, Z. Xiao, Z. Tang, Y. Wu, Z. Zhu, W. Tan, J. Am. Chem. Soc. 2008, 130, 8351-8358.
7. C. H. Lu, J. Li, J. J. Liu, H. H. Yang, X. Chen, G. N. Chen, Chem. Eur. J. 2010, 16, 4889-4894.
8. Y. Wang, J. Li, J. Jin, H. Wang, H. Tang, R. Yang, K. Wang, Anal. Chem. 2009, 81, 9703-9709.
9. Quadruplex Nucleic Acids (Eds.:, S. Neidle, S. Balasubramanian,), Royal Society of Chemistry, Cambridge, 2006.
10. G. N. Parkinson, M. P. Lee, S. Neidle, Nature 2002, 417, 876-880.
11. J. Ren, X. Qu, J. O. Trent, J. B. Chaires, Nucleic Acids Res. 2002, 30, 2307-2315.
12. A. N. Lane, J. B. Chaires, R. D. Gray, J. O. Trent, Nucleic Acids Res. 2008, 36, 5482-5515.
13. G. R. Clark, P. D. Pytel, C. J. Squire, S. Neidle, J. Am. Chem. Soc. 2003, 125, 4066-4067.
14. D. Miyoshi, H. Karimata, Z. M. Wang, K. Koumoto, N. Sugimoto, J. Am. Chem. Soc. 2007, 129, 5919-5925.
15. R. P. Fahlman, D. Sen, J. Mol. Biol. 1998, 280, 237-244.
16. P. Alberti, J. L. Mergny, Proc. Natl. Acad. Sci. USA 2003, 100, 1569-1573.
17. W. U. Dittmer, A. Reuter, F. C. Simmel, Angew. Chem. 2004, 116, 3634-3637
18. Angew. Chem. Int. Ed. 2004, 43, 3550-3553.
19. D. C. Harris, X. Chu, J. Jayawickramarajah, J. Am. Chem. Soc. 2008, 130, 14950-14951.
20. C. Zhao, Y. Song, J. Ren, X. Qu, Biomaterials 2009, 30, 1739-1745.
21. G. Song, M. Chen, C. Chen, C. Wang, D. Hu, J. Ren, X. Qu, Biochimie 2010, 92, 121-127.
22. C. Wang, Z. Huang, Y. Lin, J. Ren, X. Qu, Adv. Mater. 2010, 22, 2792-2798.
23. I. Willner, M. Zayats, Angew. Chem. 2007, 119, 6528-6538
24. Angew. Chem. Int. Ed. 2007, 46, 6408-6418.
25. I. Willner, B. Shlyahovsky, M. Zayats, B. Willner, Chem. Soc. Rev. 2008, 37, 1153-1165.
26. Y. Peng, X. Wang, Y. Xiao, L. Feng, C. Zhao, J. Ren, X. Qu, J. Am. Chem. Soc. 2009, 131, 13813-13818.
27. F. Pu, Z. Huang, D. Hu, J. Ren, S. Wang, X. Qu, Chem. Commun. 2009, 7357-7359.
28. A. Bourdoncle, A. Estevez Torres, C. Gosse, L. Lacroix, P. Vekhoff, T. Lea Saux, L. Jullien, J. L. Mergny, J. Am. Chem. Soc. 2006, 128, 11094-11105.
29. J. Ren, J. B. Chaires, Biochemistry 1999, 38, 16067-16075.
30. H. Arthanari, S. Basu, T. L. Kawano, P. H. Bolton, Nucleic Acids Res. 1998, 26, 3724-3728.
31. D. Hu, F. Pu, Z. Huang, J. Ren, X. Qu, Chem. Eur. J. 2010, 16, 2605-2610.
32. H. Nilsen, H. E. Krokan, Carcinogenesis 2001, 22, 987-998.
33. M. V. Sukhanova, S. N. Khodyreva, N. A. Lebedeva, R. Prasad, S. H. Wilson, O. I. Lavrik, Nucleic Acids Res. 2005, 33, 1222-1229.
34. L. Gros, M. K. Saparbaev, J. Laval, Oncogene 2002, 21, 8905-8925.
35. B. Liu, X. Yang, K. Wang, W. Tan, H. Li, H. Tang, Anal. Biochem. 2007, 366, 237-243.
36. J. T. Stivers, Nucleic Acids Res. 1998, 26, 3837-3844.
37. A. Maksimenko, A. A. Ishchenko, G. Sanz, J. Laval, R. H. Elder, M. K. Saparbaev, Biochem. Biophys. Res. Commun. 2004, 319, 240-246.
38. G. Slupphaug, C. D. Mol, B. Kavli, A. S. Arvai, H. E. Krokan, J. A. Tainer, Nature 1996, 384, 87-92.
39. E. Seibert, J. B. Ross, R. Osman, Biochemistry 2002, 41, 10976-10984.
40. K. Krusong, E. P. Carpenter, S. R. Bellamy, R. Savva, G. S. Baldwin, J. Biol. Chem. 2006, 281, 4983-4992.
41. K. Lee, K. Maisel, J. M. Rouillard, E. Gulari, J. Kim, Chem. Mater. 2008, 20, 2848-2850.
42. J. J. Li, Y. Chu, B. Y. Lee, X. S. Xie, Nucleic Acids Res. 2008, 36, e 36.
43. Q. Guo, X. Yang, K. Wang, W. Tan, W. Li, H. Tang, H. Li, Nucleic Acids Res. 2009, 37, e 20.
44. X. Zuo, F. Xia, Y. Xiao, K. W. Plaxco, J. Am. Chem. Soc. 2010, 132, 1816-1818.