RNAi as a potential tool for biotechnological applications in fungi

Applied Microbiology and Biotechnology

Volumn 89, Issue 3, 2011, Pages 501-512

  Salame, Tomer M ^a   Ziv, Carmit ^a   Hadar, Yitzhak ^a   Yarden, Oded ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

RNA interference (RNAi); RNA silencing

Indexed keywords

BIOINFORMATIC TOOLS; BIOTECHNOLOGICAL APPLICATIONS; DOUBLE-STRANDED RNA (DSRNA); GENE SILENCING; HUMAN PATHOGENS; NON-TARGET EFFECTS; POST-TRANSCRIPTIONAL; POTENTIAL TOOL; RESEARCH AND APPLICATION; REVERSE GENETICS; RNA INTERFERENCE; RNA SILENCING; SMALL RNA; VIRULENCE FACTORS;

BIOINFORMATICS; BIOLOGICAL MATERIALS; BIOTECHNOLOGY; FUNGI; RNA;

GENE EXPRESSION;

BIOMATERIAL; RNA;

BIOINFORMATICS; BIOTECHNOLOGY; ENZYME ACTIVITY; FUNGUS; GENE EXPRESSION; GENETICALLY MODIFIED ORGANISM; MITOCHONDRIAL DNA; RNA; VIRULENCE;

BIOTECHNOLOGY; BIOTRANSFORMATION; FUNGAL STRAIN; FUNGAL VIRULENCE; GENE SILENCING; GENETIC TRANSCRIPTION; NONHUMAN; REVIEW; RNA INTERFERENCE;

BIOTECHNOLOGY; FUNGI; GENE EXPRESSION REGULATION, FUNGAL; GENE KNOCKDOWN TECHNIQUES; HUMANS; RNA INTERFERENCE; RNA, SMALL INTERFERING;

FUNGI;

EID: 79251597602     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2928-1     Document Type: Review

References (113)

1. N Agrawal PVN Dasaradhi A Mohmmed P Malhotra RK Bhatnagar SK Mukherjee 2003 RNA interference: biology, mechanism and applications Microbiol Mol Biol Rev 67 657 685 1:CAS:528:DC%2BD2cXmt1Sqsw%3D%3D
2. A Ah Fong HS Judelson 2003 Cell cycle regulator Cdc14 is expressed during sporulation but not hyphal growth in the fungus-like oomycete Phytophthora infestans Mol Microbiol 50 487 494
3. DB Archer DA Mackenzie DJ Jeenes IN Roberts 1992 Proteolytic degradation of heterologous proteins expressed in Aspergillus niger Biotechnol Lett 14 357 362 1:CAS:528:DyaK38XksVCgs7g%3D
4. JS Bacon D Jones VC Farmer DM Webley 1968 The occurrence of alpha-(1-3)-glucan in Cryptococcus, Schizosaccharomyces and Polyporus species, and its hydrolysis by a Streptomyces culture filtrate lysing cell walls of Cryptococcus Biochim Biophys Acta 158 313 315 1:CAS:528:DyaF1cXkt1Gitb4%3D
5. A Baldo A Mathy J Tabart P Camponova S Vermout L Massart F Maréchal M Galleni B Mignon 2010 Secreted subtilisin Sub3 from Microsporum canis is required for adherence to but not for invasion of the epidermis Br J Dermatol 162 990 997 1:CAS:528:DC%2BC3cXnsVejsL8%3D
6. LM Barton RA Prade 2008 Inducible RNA interference of brlAbeta in Aspergillus nidulans Eukaryot Cell 7 2004 2007 1:CAS:528:DC%2BD1cXhsVartL%2FF
7. M Bernard JP Latge 2001 Aspergillus fumigates cell wall: composition and biosynthesis Med Mycol 39 9 17 1:CAS:528:DC%2BD38XltlGgtg%3D%3D
8. T Bicanic R Wood LG Bekker M Darder G Meintjes TS Harrison 2005 Antiretroviral roll-out, antifungal roll-back: access to treatment for cryptococcal meningitis Lancet Infect Dis 5 530 531
9. H Brody M Suchindra 2009 RNAi-mediated gene silencing of highly expressed genes in the industrial fungi Trichoderma reesei and Aspergillus niger Ind Biotechnol 5 53 60 1:CAS:528:DC%2BD1MXjs1yntr0%3D
10. M Bromley C Gordon N Rovira-Graells J Oliver 2006 The Aspergillus fumigatus cellobiohydrolase B (cbhB) promoter is tightly regulated and can be exploited for controlled protein expression and RNAi FEMS Microbiol Lett 264 246 254 1:CAS:528:DC%2BD28XhtF2qs7rP
11. Y Brotman E Briff A Viterbo I Chet 2008 Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization Plant Physiol 147 779 6789 1:CAS:528:DC%2BD1cXnsVyht7k%3D
12. RE Cardoza JA Vizcaíno MR Hermosa S Sousa FJ González A Llobell E Monte S Gutiérrez 2006 Cloning and characterization of the erg1 gene of Trichoderma harzianum: effect of the erg1 silencing on ergosterol biosynthesis and resistance to terbinafine Fungal Genet Biol 43 164 178 1:CAS:528:DC%2BD28Xit1Ohs7g%3D
13. C Catalanotto G Azzalin G Macino C Cogoni 2000 Gene silencing in worms and fungi Nature 404 245 1:CAS:528:DC%2BD3cXit1ahtLg%3D
14. C Catalanotto G Azzalin G Macino C Cogoni 2002 Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora Genes Dev 16 790 795 1:CAS:528:DC%2BD38XivFKjt7g%3D
15. YC Chang KJ Kwon-Chung 1994 Complementation of a capsule-deficient mutation of Cryptococcus neoformans restores its virulence Mol Cell Biol 14 4912 4919 1:CAS:528:DyaK2cXlsFSitr4%3D
16. C Cogoni G Macino 1997 Isolation of quelling-defective (qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa Proc Natl Acad Sci USA 94 10233 10238 1:CAS:528:DyaK2sXmt1Gjs7s%3D
17. C Cogoni G Macino 1999 Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase Science 286 2342 2344 1:CAS:528:DC%2BD3cXjslyq
18. C Cogoni G Macino 1999 Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase Nature 399 166 169 1:CAS:528:DyaK1MXjsVOhtb8%3D
19. C Cogoni JT Irelan M Schumacher TJ Schmidhauser EU Selker G Macino 1996 Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation EMBO J 15 3153 3163 1:CAS:528:DyaK28XjvFCgtb4%3D
20. R Cohen L Persky Y Hadar 2002 Biotechnological applications and potential of wood-degrading mushrooms of the genus Pleurotus Appl Microbiol Biotechnol 58 582 594 1:CAS:528:DC%2BD38Xjs12ktLs%3D
21. GT Cole CY Hung 2001 The parasitic cell wall of Coccidioides immitis Med Mycol 39 31 40 1:CAS:528:DC%2BD38XltlGgtA%3D%3D
22. AM Costa PR Mills AM Bailey GD Foster MP Challen 2008 Oligonucleotide sequences forming short self-complimentary hairpins can expedite the down-regulation of Coprinopsis cinerea genes J Microbiol Methods 75 205 208 1:CAS:528:DC%2BD1cXhtV2jsbfI
23. ASMB Costa DJI Thomas D Eastwood SB Cutler AM Bailey GD Foster PR Mills MP Challen 2009 Quantifiable downregulation of endogenous genes in Agaricus bisporus mediated by expression of RNA hairpin J Microbiol Biotechnol 19 271 276 1:CAS:528:DC%2BD1MXlt1GisLw%3D
24. TR Cottrell TL Doering 2003 Silence of the strands: RNA interference in eukaryotic pathogens Trends Microbiol 11 37 43 1:CAS:528:DC%2BD3sXjtFygtw%3D%3D
25. MD de Backer B Neilssen M Logghe J Viaene I Loonen S Vandoninck R de Hoogt S Dewaele FA Simons P Verhasselt G Vanhoof R Contreras WH Luyten 2001 An antisense-based functional genomics approach for identification of genes critical for growth of Candida albicans Nat Biotechnol 19 235 241
26. MD de Backer M Raponi GM Arndt 2002 RNA-mediated gene silencing in non-pathogenic and pathogenic fungi Curr Opin Microbiol 5 323 329
27. JF de Jong HJ Deelstra HA Wosten LG Lugones 2006 RNA-mediated gene silencing in monokaryons and dikaryons of Schizophyllum commune Appl Environ Microbiol 72 1267 1269
28. RA Dean 1997 Signal pathways and appressorium morphogenesis Annu Rev Phytopathol 35 211 234 1:CAS:528:DyaK2sXmtVGhsrs%3D
29. RA Dean NJ Talbot DJ Ebbole ML Farman TK Mitchell MJ Orbach M Thon R Kulkarni JR Xu H Pan ND Read YH Lee I Carbone D Brown YY Oh N Donofrio JS Jeong DM Soanes S Djonovic E Kolomiets C Rehmeyer W Li M Harding S Kim MH Lebrun H Bohnert S Coughlan J Butler S Calvo LJ Ma R Nicol S Purcell C Nusbaum JE Galagan BW Birren 2005 The genome sequence of the rice blast fungus Magnaporthe grisea Nature 434 980 986 1:CAS:528:DC%2BD2MXjsVequ74%3D
30. ACC dos Santos JAL Sena SC Santos CV Dias CP Pirovani C Pungartnik RR Valle JCM Cascardo M Vincentz 2009 dsRNA-induced gene silencing in Moniliophthora perniciosa, the causal agent of witches' broom disease of cacao Fungal Genet Biol 46 825 836
31. RW Emmet DG Parberry 1975 Appressoria Ann Rev Phytopathol 13 147 167
32. I Engh M Nowrousian U Kück 2007 Regulation of melanin biosynthesis via the dihydroxynaphthalene pathway is dependent on sexual development in the ascomycete Sordaria macrospora FEMS Microbiol Lett 275 62 70 1:CAS:528:DC%2BD2sXhtVyks7jI
33. A Erental A Harel O Yarden 2007 Type 2A phosphoprotein phosphatase is required for asexual development and pathogenesis of Sclerotinia sclerotiorum Mol Plant Microb Interact 20 944 954 1:CAS:528:DC%2BD2sXot1ems7o%3D
34. A Fire S Xu MK Montgomery SA Kostas SE Driver CC Mello 1998 Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 806 811 1:CAS:528:DyaK1cXhtlCju74%3D
35. A Fitzgerald JA Van Kan KM Plummer 2004 Simultaneous silencing of multiple genes in the apple scab fungus, Venturia inaequalis, by expression of RNA with chimeric inverted repeats Fungal Genet Biol 41 963 971 1:CAS:528:DC%2BD2cXntlOht7Y%3D
36. M Goldoni G Azzalin G Macino C Cogoni 2004 Efficient gene silencing by expression of double stranded RNA in Neurospora crassa Fungal Genet Biol 41 1016 1024 1:CAS:528:DC%2BD2cXot1Wrs7w%3D
37. BJ Haas S Kamoun MC Zody RH Jiang RE Handsaker LM Cano M Grabherr CD Kodira S Raffaele T Torto-Alalibo TO Bozkurt AM Ah-Fong L Alvarado VL Anderson MR Armstrong A Avrova L Baxter J Beynon PC Boevink SR Bollmann JI Bos V Bulone G Cai C Cakir JC Carrington M Chawner L Conti S Costanzo R Ewan N Fahlgren MA Fischbach J Fugelstad EM Gilroy S Gnerre PJ Green LJ Grenville-Briggs J Griffith NJ Grünwald K Horn NR Horner CH Hu E Huitema DH Jeong AM Jones JD Jones RW Jones EK Karlsson SG Kunjeti K Lamour Z Liu L Ma D Maclean MC Chibucos H McDonald J McWalters HJ Meijer W Morgan PF Morris CA Munro K O'Neill M Ospina-Giraldo A Pinzón L Pritchard B Ramsahoye Q Ren S Restrepo S Roy A Sadanandom A Savidor S Schornack DC Schwartz UD Schumann B Schwessinger L Seyer T Sharpe C Silvar J Song DJ Studholme S Sykes M Thines PJ van de Vondervoort V Phuntumart S Wawra R Weide J Win C Young S Zhou W Fry BC Meyers P van West J Ristaino F Govers PR Birch SC Whisson HS Judelson C Nusbaum 2009 Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans Nature 461 393 398 1:CAS:528:DC%2BD1MXhtFSnt7vM
38. A Hamilton O Voinnet L Chappell D Baulcombe 2002 Two classes of short interfering RNA in RNA silencing EMBO J 21 4671 4679 1:CAS:528: DC%2BD38Xms1KmsrY%3D
39. TM Hammond NP Keller 2005 RNA silencing in Aspergillus nidulans is independent of RNA-dependent RNA polymerases Genetics 169 607 617 1:CAS:528:DC%2BD2MXjtVOmtbY%3D
40. MN Heneghan AMSB Costa MP Challen PR Mills A Bailey GD Foster 2007 A comparison of methods for successful triggering of gene silencing in Coprinus cinereus Mol Biotechnol 35 283 294 1:CAS:528:DC%2BD2sXlvVGqs74%3D
41. C Henry I Mouyna JP Latge 2007 Testing the efficacy of RNA interference constructs in Aspergillus fumigatus Curr Genet 51 277 284 1:CAS:528: DC%2BD2sXjt1Sqsbw%3D
42. LH Hogan BS Klein 1994 Altered expression of surface alpha-1, 3-glucan in genetically related strains of Blastomyces dermatitidis that differ in virulence Infect Immun 62 3543 3546 1:STN:280:DyaK2czhsVCkug%3D%3D
43. G Hutvagner PD Zamore 2002 RNAi: nature abhors a double-strand Curr Opin Genet Dev 12 225 232 1:CAS:528:DC%2BD38XhvVCntr8%3D
44. S Jana C Chakraborty S Nandi 2004 Mechanisms and roles of the RNA-based gene silencing Electron J Biotechnol 7 324 335
45. D Janus B Hoff E Hofmann U Kück 2007 An efficient fungal RNA-silencing system using the DsRed reporter gene Appl Environ Microbiol 73 962 970 1:CAS:528:DC%2BD2sXltlalsbk%3D
46. D Janus B Hoff U Kück 2009 Evidence for Dicer-dependent RNA interference in the industrial penicillin producer Penicillium chrysogenum Microbiology 155 3946 3956 1:CAS:528:DC%2BD1MXhs1Wht73I
47. N Kadotani H Nakayashiki Y Tosa S Mayama 2003 RNA silencing in the phytopathogenic fungus Magnaporthe oryzae Mol Plant Microb Interact 16 769 776 1:CAS:528:DC%2BD3sXmvVert78%3D
48. N Kadotani H Nakayashiki Y Tosa S Mayama 2004 One of the two Dicer-like proteins in the filamentous fungi Magnaporthe oryzae genome is responsible for hairpin RNA-triggered RNA silencing and related small interfering RNA accumulation J Biol Chem 279 44467 44474 1:CAS:528:DC%2BD2cXosFymsbo%3D
49. MJ Kemppainen AG Pardo 2010 pHg/pSILBAgamma vector system for efficient gene silencing in homobasidiomycetes: optimization of ihpRNA-triggering in the mycorrhizal fungus Laccaria bicolor Microb Biotechnol 3 178 200
50. MJ Kemppainen S Duplessis F Martin AG Pardo 2009 RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus Environ Microbiol 11 1878 1896 1:CAS:528:DC%2BD1MXptlygsro%3D
51. M Khatri MV Rajam 2007 Targeting polyamines of Aspergillus nidulans by siRNA specific to fungal ornithine decarboxylase gene Med Mycol 45 211 220 1:CAS:528:DC%2BD2sXot1Kntbs%3D
52. N Kitamoto S Yoshino K Ohmiya N Tsukagoshi 1999 Sequence analysis, overexpression, and antisense inhibition of a beta-xylosidase gene, xylA, from Aspergillus oryzae KBN616 Appl Environ Microbiol 65 20 24 1:CAS:528: DyaK1MXjvVyjug%3D%3D
53. KR Klimpel WE Goldman 1987 Isolation and characterization of spontaneous avirulent variants of Histoplasma capsulatum Infect Immun 55 528 533 1:CAS:528:DyaL2sXhtlGit7c%3D
54. KR Klimpel WE Goldman 1988 Cell walls from avirulent variants of Histoplasma capsulatum lack α-(1, 3)-glucan Infect Immun 56 2997 3000 1:CAS:528:DyaL1cXmt1Kgtbw%3D
55. T Krajaejun GM Gauthier CA Rappleye TD Sullivan BS Klein 2007 Development and application of a green fluorescent protein sentinel system for identification of RNA interference in Blastomyces dermatitidis illuminates the role of septin in morphogenesis and sporulation Eukaryot Cell 6 1299 1309 1:CAS:528:DC%2BD2sXpt1alurk%3D
56. U Kück B Hoff 2010 New tools for the genetic manipulation of filamentous fungi Appl Microbiol Biotechnol 86 51 62
57. M Latijnhouwers W Ligterink VG Vleeshouwers P van West F Govers 2004 A Galpha subunit controls zoospore motility and virulence in the potato late blight pathogen Phytophthora infestans Mol Microbiol 51 925 936 1:CAS:528:DC%2BD2cXhslOitLc%3D
58. L Li S Chang Y Liu 2010 RNA interference pathways in filamentous fungi Cell Mol Life Sci 10.1007/s00018-010-0471-y
59. H Liu TR Cottrell LM Pierini WE Goldman TL Doering 2002 RNA interference in the pathogenic fungus Cryptococcus neoformans Genetics 160 463 470 1:CAS:528:DC%2BD38XitlWku78%3D
60. H Liu B Zhang C Li X Bao 2010 Knock down of chitosanase expression in phytopathogenic fungus Fusarium solani and its effect on pathogenicity Curr Genet 56 275 281 1:CAS:528:DC%2BC3cXmtlSit7k%3D
61. M Machida O Yamada K Gomi 2008 Genomics of Aspergillus oryzae: learning from the history of koji mold and exploration of its future DNA Res 15 173 183 1:CAS:528:DC%2BD1cXht12ht7%2FE
62. H Martens J Novotny J Oberstrass TL Steck P Postlethwait W Nellen 2002 RNAi in Dictyostelium: the role of RNA-directed RNA polymerases and double-stranded RNase Mol Biol Cell 13 445 453 1:CAS:528:DC%2BD38XivVertrY%3D
63. F Martin A Aerts D Ahrén A Brun EG Danchin F Duchaussoy J Gibon A Kohler E Lindquist V Pereda A Salamov HJ Shapiro J Wuyts D Blaudez M Buée P Brokstein B Canbäck D Cohen PE Courty PM Coutinho C Delaruelle JC Detter A Deveau S DiFazio S Duplessis L Fraissinet-Tachet E Lucic P Frey-Klett C Fourrey I Feussner G Gay J Grimwood PJ Hoegger P Jain S Kilaru J Labbé YC Lin V Legué F Le Tacon R Marmeisse D Melayah B Montanini M Muratet U Nehls H Niculita-Hirzel MP Oudot-Le Secq M Peter H Quesneville B Rajashekar M Reich N Rouhier J Schmutz T Yin M Chalot B Henrissat U Kües S Lucas Y Van de Peer GK Podila A Polle PJ Pukkila PM Richardson P Rouzé IR Sanders JE Stajich A Tunlid G Tuskan IV Grigoriev 2008 The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis Nature 452 88 92 1:CAS:528:DC%2BD1cXivFyiurk%3D
64. A Matityahu Y Hadar CG Dosoretz PA Belinky 2008 Gene silencing by RNA interference in the white rot fungus Phanerochaete chrysosporium Appl Environ Microbiol 74 5359 5365 1:CAS:528:DC%2BD1cXhtV2ru7rJ
65. MA Matzke JA Birchler 2005 RNAi-mediated pathways in the nucleus Nat Rev Genet 6 24 35 1:CAS:528:DC%2BD2MXlvVGh
66. T McDonald D Brown NP Keller TM Hammond 2005 RNA silencing of mycotoxin production in Aspergillus and Fusarium species Mol Plant Microb Interact 18 539 545 1:CAS:528:DC%2BD2MXksFyls7w%3D
67. RE Moreno F Kanetsuna LM Carbonell 1969 Isolation of chitin and glucan from the cell wall of the yeast form of Paracoccidioides brasiliensis Arch Biochem Biophys 130 212 217 1:CAS:528:DyaF1MXosFSquw%3D%3D
68. A Moriwaki M Ueno S Arase J Kihara 2007 RNA-mediated gene silencing in the phytopathogenic fungus Bipolaris oryzae FEMS Microbiol Lett 269 85 89 1:CAS:528:DC%2BD2sXjvVyntLk%3D
69. A Moriwaki H Katsube M Ueno S Arase J Kihara 2008 Cloning and characterization of the BLR2, the homologue of the blue-light regulator of Neurospora crassa WC-2, in the phytopathogenic fungus Bipolaris oryzae Curr Microbiol 56 115 121 1:CAS:528:DC%2BD1cXks1amsw%3D%3D
70. I Mouyna C Henry TL Doering JP Latge 2004 Gene silencing with RNA interference in the human pathogenic fungus Aspergillus fumigatus FEMS Microbiol Lett 237 317 324 1:CAS:528:DC%2BD2cXmsVGitbc%3D
71. H Nakayashiki 2005 RNA silencing in fungi: mechanisms and applications FEBS Lett 579 5950 5957 1:CAS:528:DC%2BD2MXhtFKmtbnP
72. H Nakayashiki QB Nguyen 2008 RNA interference: roles in fungal biology Curr Opin Microbiol 11 494 502 1:CAS:528:DC%2BD1cXhsVers73I
73. H Nakayashiki S Hanada BQ Nguyen N Kadotani Y Tosa S Mayama 2005 RNA silencing as a tool for exploring gene function in ascomycete fungi Fungal Genet Biol 42 275 283 1:CAS:528:DC%2BD2MXhvVCqs78%3D
74. H Nakayashiki N Kadotani S Mayama 2006 Evolution and diversification of RNA silencing proteins in fungi J Mol Evol 63 127 135 1:CAS:528: DC%2BD28XmsVWqs74%3D
75. SH Namekawa K Iwabata H Sugawara FN Hamada A Koshiyama H Chiku T Kamada K Sakaguchi 2005 Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing Microbiology 151 3669 3678 1:CAS:528:DC%2BD2MXht1Cms7nJ
76. C Ngiam DJ Jeenes PJ Punt CA Van Den Hondel DB Archer 2000 Characterization of a foldase, protein disulfide isomerase A, in the protein secretory pathway of Aspergillus niger Appl Environ Microbiol 66 775 782 1:CAS:528:DC%2BD3cXhtFeqsL0%3D
77. QB Nguyen N Kadotani S Kasahara Y Tosa S Mayama H Nakayashiki 2008 Systematic functional analysis of calcium-signalling proteins in the genome of the rice-blast fungus, Magnaporthe oryzae, using a high-throughput RNA-silencing system Mol Microbiol 68 1348 1365 1:CAS:528:DC%2BD1cXntlWjsLs%3D
78. FE Nicolás S Torres-Martínez RM Ruiz-Vázquez 2003 Two classes of small antisense RNAs in fungal RNA silencing triggered by non-integrative transgenes EMBO J 22 3983 3991
79. FE Nicolás JP de Haro S Torres-Martínez RM Ruiz-Vázquez 2007 Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects Fungal Genet Biol 44 504 516
80. T Nolan L Braccini G Azzalin A De Toni G Macino C Cogoni 2005 The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa Nucleic Acids Res 33 1564 1573 1:CAS:528:DC%2BD2MXivFWhs7s%3D
81. P Novick C Field R Schekman 1980 Identification of 23 complementation groups required for posttranslational events in the yeast secretory pathway Cell 21 205 215 1:CAS:528:DyaL3cXlsVKisLg%3D
82. JM Oliveira D van der Veen LH de Graaff L Qui 2008 Efficient cloning system for construction of gene silencing vectors in Aspergillus niger Appl Microbiol Biotechnol 80 917 924 1:CAS:528:DC%2BD1cXhtFWls7vJ
83. J Panepinto K Komperda S Frases YD Park JT Djordjevic A Casadevall PR Williamson 2009 Sec6-dependent sorting of fungal extracellular exosomes and laccase of Cryptococcus neoformans Mol Microbiol 71 1165 1176 1:CAS:528:DC%2BD1MXjslSlt7w%3D
84. RM Patel JA van Kan AM Bailey GD Foster 2008 RNA mediated gene silencing of superoxide dismutase (bcsod1) in Botrytis cinerea Phytopathology 98 1334 1339 1:CAS:528:DC%2BD1MXivFynug%3D%3D
85. M Raponi GM Arndt 2003 Double-stranded RNA-mediated gene silencing in fission yeast Nucleic Acids Res 31 4481 4489 1:CAS:528:DC%2BD3sXlvF2qsr8%3D
86. CA Rappleye JT Engle WE Goldman 2004 RNA interference in Histoplasma capsulatum demonstrates a role for alpha-(1, 3)-glucan in virulence Mol Microbiol 53 153 165 1:CAS:528:DC%2BD2cXlvFentrs%3D
87. S Renckens H De Greve M Van Montagu JP Hernalsteens 1992 Petunia plants escape from negative selection against a transgene by silencing the foreign DNA via methylation Mol Gen Genet 233 53 64 1:CAS:528:DyaK38Xks1Chsrk%3D
88. N Romano G Macino 1992 Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences Mol Microbiol 6 3343 3353 1:CAS:528:DyaK3sXlsF2hsw%3D%3D
89. EB Rukavtsova VV Alekseeva YI Buryanov 2010 The use of RNA interference for the metabolic engineering of plants (Review) Bioorg Khim 36 146 156 1:CAS:528:DC%2BC3cXktlSjsbY%3D
90. TM Salame O Yarden Y Hadar 2010 Pleurotus ostreatus manganese-dependent peroxidase silencing impairs decolourization of Orange II Microb Biotechnol 3 93 106 1:CAS:528:DC%2BC3cXlslajsbo%3D
91. J Schümann C Hertweck 2007 Molecular basis of cytochalasan biosynthesis in fungi: gene cluster analysis and evidence for the involvement of a PKS-NRPS hybrid synthase by RNA silencing J Am Chem Soc 129 9564 9565
92. GC Segers R van Wezel X Zhang Y Hong DL Nuss 2006 Hypovirus papain-like protease p29 suppresses RNA silencing in the natural fungal host and in a heterologous plant system Eukaryot Cell 5 896 904 1:CAS:528:DC%2BD28XmtVajtbg%3D
93. H Shafran I Miyara R Eshed D Prusky A Sherman 2008 Development of new tools for studying gene function in fungi based on the Gateway system Fungal Genet Biol 45 1147 1154 1:CAS:528:DC%2BD1cXoslWkurg%3D
94. CL Silva LM Alves F Figueiredo 1994 Involvement of cell wall glucans in the genesis and persistence of the inflammatory reaction caused by the fungus Paracoccidioides brasiliensis Microbiology 140 1189 1194 1:CAS:528: DyaK2cXktVGjsro%3D
95. S Singh SA Braus-Stromeyer C Timpner VT Tran G Lohaus M Reusche J Knufer T Teichmann A von Tiedemann GH Braus 2009 Silencing of Vlaro2 for chorismate synthase revealed that the phytopathogen Verticillium longisporum induces the cross-pathway control in the xylem Appl Microbiol Biotechnol 85 1961 1976
96. TF Smith MS Waterman 1981 Identification of common molecular subsequences J Mol Biol 147 195 197 1:CAS:528:DC%2BC3cXitlCnsLw%3D
97. MJ Spiering CD Moon HH Wilkinson CL Schardl 2005 Gene clusters for insecticidal loline alkaloids in the grass-endophytic fungus Neotyphodium uncinatum Genetics 3 1403 1414
98. S Takeno E Sakuradani A Tomi M Inohara-Ochiai H Kawashima T Ashikari S Shimizu 2005 Improvement of the fatty acid composition of an oil-producing filamentous fungus, Mortierella alpina 1 S-4, through RNA interference with delta12-desaturase gene expression Appl Environ Microbiol 71 5124 5128 1:CAS:528:DC%2BD2MXhtVahsbbL
99. P Tanguay S Bozza C Breuil 2006 Assessing RNAi frequency and efficiency in Ophiostoma floccosum and O. piceae Fungal Genet Biol 43 804 812 1:CAS:528:DC%2BD28Xht1Sgs7fF
100. MLP Tinoco BBA Dias RC Dall'Astta JA Pamphile FJL Aragão 2010 In vivo trans-specific gene silencing in fungal cells by in planta expression of a double-stranded RNA BMC Biol 8 27 10.1186/1741-7007-8-27
101. RV Ullán RP Godio F Teijeira I Vaca C Garcia-Estrada R Feltrer K Kosalkova JF Martin 2008 RNA-silencing in Penicillium chrysogenum and Acremonium chrysogenum: validation studies using beta-lactam genes expression J Microbiol Methods 75 209 218
102. AR van der Krol LA Mur M Beld JN Mol AR Stuitje 1990 Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression Plant Cell 2 291 299
103. P van West S Kamoun JW van't Klooster F Govers 1999 Internuclear gene silencing in Phytophthora infestans Mol Cell 3 339 348
104. S Vermout J Tabart A Baldo M Monod B Losson B Mignon 2007 RNA silencing in the dermatophyte Microsporum canis FEMS Microbiol Lett 275 38 45 1:CAS:528:DC%2BD2sXhtVyks7jN
105. A Viterbo U Landau S Kim L Chernin I Chet 2010 Characterization of ACC deaminase from the biocontrol and plant growth-promoting agent Trichoderma asperellum T203 FEMS Microbiol Lett 305 42 48 1:CAS:528:DC%2BC3cXktVSlt7k%3D
106. SH Wani 2010 Inducing fungus-resistance into plants through biotechnology Not Sci Biol 2 14 21 1:CAS:528:DC%2BC3cXhtFCru7bL
107. SC Whisson AO Avrova P Van West JT Jones 2005 A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans Mol Plant Pathol 6 153 163 1:CAS:528:DC%2BD2MXktFalsLs%3D
108. RA Wilson NJ Talbot 2009 Under pressure: investigating the biology of plant infection by Magnaporthe oryzae Nat Rev Microbiol 7 185 195 1:CAS:528:DC%2BD1MXhvFKisL8%3D
109. T Yamada S Morishita 2005 Accelerated off-target search algorithm for siRNA Bioinformatics 21 1316 1324 1:CAS:528:DC%2BD2MXjtlGhtr8%3D
110. O Yamada R Ikeda Y Ohkita R Hayashi K Sakamoto O Akita 2007 Gene silencing by RNA interference in the koji mold Aspergillus oryzae Biosci Biotechnol Biochem 71 138 144 1:CAS:528:DC%2BD2sXhs1WltL4%3D
111. PD Zamore T Tuschl PA Sharp DP Bartel 2000 RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals Cell 101 25 33 1:CAS:528:DC%2BD3cXisVaitbo%3D
112. XF Zheng Y Kobayashi M Takeuchi 1998 Construction of a low-serine-type-carboxypeptidase-producing mutant of Aspergillus oryzae by the expression of antisense RNA and its use as a host for heterologous protein secretion Appl Microbiol Biotechnol 49 39 44 1:CAS:528:DyaK1cXhtVantb0%3D
113. C Ziv O Yarden 2010 Gene silencing for functional analysis: assessing RNAi as a tool for manipulation of gene expression Methods Mol Biol 638 77 100 1:CAS:528:DC%2BC3cXos1CrsLg%3D