Epistasis in natural populations of a predominantly selfing plant

Heredity

Volumn 106, Issue 2, 2011, Pages 300-309

  Volis, S ^a   Shulgina, I ^a   Zaretsky, M ^a   Koren, O ^b  

^a BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^b Institute of Biology and Soil Science   (Russian Federation)

Author keywords

Coadaptation; epistasis; fitness; heterosis; self pollination; wild barley

Indexed keywords

ADAPTIVE RADIATION; ALLELE; AUTOGAMY; BARLEY; EPISTASIS; EXPERIMENTAL STUDY; FITNESS; GENETIC ANALYSIS; GENETIC STRUCTURE; GENOTYPE; GERMINATION; HETEROZYGOSITY; KINSHIP; NUMERICAL MODEL; PERFORMANCE ASSESSMENT; POPULATION STRUCTURE; SEED; SELECTION; SPATIAL ANALYSIS; WILD POPULATION;

ARTICLE; BARLEY; CROSS BREEDING; GENETIC EPISTASIS; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; HETEROSIS; HETEROZYGOTE DETECTION; HISTOLOGY; INBREEDING; POLLINATION; REPRODUCTIVE FITNESS; SELF FERTILIZATION;

CROSSES, GENETIC; EPISTASIS, GENETIC; GENETIC FITNESS; GENETIC VARIATION; HETEROZYGOTE DETECTION; HORDEUM; HYBRID VIGOR; INBREEDING; POLLINATION; SELF-FERTILIZATION;

HORDEUM; HORDEUM VULGARE SUBSP. SPONTANEUM;

EID: 78751646178     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2010.79     Document Type: Article

References (76)

1. Agren J, Schemske DW (1993). Outcrossing rate and inbreeding depression in two annual monoecious herbs, Begonia hirsute and B. semiovata. Evolution 47: 125-135.
2. Allard RW (1975). The mating system and microevolution. Genetics 79: 115-126.
3. Allard RW, Barbel GR, Clegg MT, Kahler AL (1972). Evidence for coadaptation in Avena barbata. Proc Natl Acad Sci USA 69: 3043-3048.
4. Allard RW, Garcia P, Saenz-de-Miera LE, Perez de la Vega M (1993). Evolution of multilocus genetic structure in Avena hirtula and Avena barbata. Genetics 135: 1125-1139.
5. Barton NH, Otto SP (2005). Evolution of recombination due to random drift. Genetics 169: 2353-2370.
6. Bieri J, Kawecki TJ (2003). Genetic architecture of differences between populations of cowpea weevil (Callosobruchus maculatus) evolved in the same environment. Evolution 57: 274-287.
7. Bonnin I, Ronfort J, Wozniak F, Olivieri I (2001). Spatial effects and rare outcrossing events in Medicago truncatula (Fabaceae). Mol Ecol 10: 1371-1383.
8. Brown AHD, Zohary D, Nevo E (1978). Outcrossing rates and heterozygosity in natural populations of Hordeum spontaneum Koch in Israel. Heredity 41: 49-62.
9. Brown JH, Kodric-Brown A (1977). Turnover rates in insular biogeography: effect of immigration on extinction. Ecology 58: 445-449.
10. Campbell DR, Waser NM (1987). The evolution of plant mating systems-multilocus simulations of pollen dispersal. Am Natural 129: 593-609.
11. Campbell DR, Waser NM (2001). Genotype-by-environment interaction and the fitness of plant hybrids in the wild. Evolution 55: 669-676.
12. Charlesworth B (1990). Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet Res 55: 199-221.
13. Charlesworth D (2003). Effects of inbreeding on the genetic diversity of populations. Philos Trans R Soc London Ser B-Biol Sci 358: 1051-1070.
14. Edmands S (2007). Between a rock and a hard place: evaluating the relative risks of inbreeding and outbreeding for conservation and management. Mol Ecol 16: 463-475.
15. Epperson BK (1989). Spatial patterns of genetic variation within plant populations. In: Brown ADH, Clegg MT, Kahler AL and Weir BS (eds). Plant Population Genetics, Breeding and Genetic Resources. Sinauer: Sunderland, MA.
16. Felsenstein J (1974). The evolutionary advantage of recombination. Genetics 78: 737-756.
17. Fenster CB, Galloway LF, Chao L (1997). Epistasis and its consequencies for the evolution of natural populations. Trends Ecol Evol 12: 282-286.
18. Fisher RA (1918). The correlation between relatives on the supposition of Mendelian inheritance. Philos Trans R Soc Edinburgh 3: 399-433.
19. Fritsche F, Kaltz O (2000). Is the Prunella (Lamiaceae) hybrid zone structured by an environmental gradient? Evidence from a reciprocal transplant experiment. Am J Botany 87: 995-1003.
20. Garris AJ, McCouch SR, Kresovich S (2003). Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L. Genetics 165: 759-769.
21. Golenberg EM (1987). Estimation of gene flow and genetic neighborhood size by indirect methods in a selfing annual, Triticum dicoccoides. Evolution 41: 1326-1334.
22. Gutterman Y (1993). Seed Germination in Desert Plants. Springer Verlag: Berlin.
23. Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA et al. (2004). Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor. Genetics 167: 471-483.
24. Hamrick JL, Holden LR (1979). Influence of microhabitat heterogeneity on gene frequency distribution and gametic phase disequilibrium in Avena barbata. Evolution 33: 521-533.
25. Harlan RJ, Zohary D (1966). Distribution of wild wheats and barley. Science 153: 1074-1080.
26. Hedrick PW, Holden L (1979). Hitch-hiking: an alternative to coadaptation for the barley and slender wild oat examples. Heredity 43: 79-86.
27. Heywood JS (1991). Spatial analysis of genetic variation in plant populations. Ann Rev Ecol Syst 22: 335-355.
28. Hill WG, Robertson A (1966). The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
29. Huang Q, Beharav A, Kirzhner V, E N (2002). Mosaic microecological differential stress causes adaptive microsatellite divergence in wild barley, Hordeum spontaneum, at Neve Yaar, Israel. Genome 45: 1216-1229.
30. Hufford KM, Mazer SJ (2003). Plant ecotypes: genetic differentiation in the age of ecological restoration. Trends Ecol Evol 18: 147-155.
31. Johansen-Morris AD, Latta RG (2006). Fitness consequences of hybridization between ecotypes of Avena barbata: hybrid breakdown, hybrid vigor, and transgressive segregation. Evolution 60: 1585-1595.
32. Keller LF, Waller DM (2002). Inbreeding effects in wild populations. Trends Ecol Evol 17: 230-241.
33. Kondrashov AS (1988). Deleterious mutations and the evolution of sexual reproduction. Nature 336: 435-440.
34. Laine A-L (2006). Evolution of host resistance: looking for coevolutionary hotspots at small spatial scales. Proc R Soc B-Biol Sci 273: 267-273.
35. Latta RG, MacKenzie JL, Vats A, Schoen DJ (2004). Divergence and variation of quantitative traits between allozyme genotypes of Avena barbata from contrasting habitats. J Ecol 92: 57-71.
36. Lechowicz MJ, Bell G (1991). The ecology and genetics of fitness in forest plants. 2. Microspatial heterogeneity of the edaphic environment. J Ecol 79: 687-696.
37. Lenormand T, Otto SP (2000). The evolution of recombination in a heterogeneous environment. Genetics 156: 423-438.
38. Lonn M (1993). Genetic structure and allozyme-microhabitat associations in Bromus hordeaceus. Oikos 68: 99-106.
39. Lynch JM (1991). The genetic interpretation of inbreeding depression and outbreeding depression. Evolution 45: 622-629.
40. Martin G, Otto SP, Lenormand T (2006). Selection for recombination in structured populations. Genetics 172: 593-609.
41. Miller RE, Hoef JMV, Fowler NL (1995). Spatial heterogeneity in eight central Texas grasslands. J Ecol 83: 919-928.
42. Morrell PL, Lundy KE, Clegg MT (2003). Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration. Proc Natl Acad Sci USA 100: 10812-10817.
43. Morrell PL, Toleno DM, Lundy KE, Clegg MT (2005). Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. Proc Natl Acad Sci USA 102: 2442-2447.
44. Muller HJ (1932). Some genetic aspects of sex. Am Natural 66: 118-138.
45. Mulvaney RL (1996). Nitrogen-inorganic forms. In: Sparks DL (ed). Methods of Soil Analysis. Part 3. Chemical Methods. Soil Science Society of America: Madison, WI. pp 1123-1184.
46. Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR et al. (2005). Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biol J Linnean Soc 84: 205-224.
47. Nevo E, Beiles A, Kaplan D, Golenberg EM (1986). Natural selection of allozyme polymorphisms: a microsite test revealing ecological genetic differentiation in wild barley. Evolution 40: 13-20.
48. Nordborg M (2000). Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial selffertilization. Genetics 154: 923-929.
49. Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J et al. (2002). The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet 30: 190-193.
50. Parker MA (1992). Outbreeding depression in a selfing annual. Evolution 46: 837-841.
51. Peakall R, Smouse PE (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol 6: 288-295.
52. Price MV, Waser NM (1979). Pollen dispersal and optimal outcrossing in Delphinium nelsoni. Nature 277: 294-297.
53. Quilichini A, Debussche M, Thompson JD (2001). Evidence for local outbreeding depression in the Mediterranean island endemic Anchusa crispa Viv. (Boraginaceae). Heredity 87: 190-197.
54. Ramakrishnan AP, Meyer SE, Fairbanks DJ, Coleman CE (2006). Ecological significance of microsatellite variation in western North American populations of Bromus tectorum. Plant Species Biol 21: 61-73.
55. Ritland K (1996). Estimators for pairwise relatedness and individual inbreeding coefficients. Genet Res 67: 175-185.
56. Ronfort J, Couvet D (1995). A stochastic model of selection on selfing rates in structured populations. Genet Res 65: 209-222.
57. Roze D, Barton NH (2006). The Hill-Robertson effect and the evolution of recombination. Genetics 173: 1793-1811.
58. Schlesinger WH, Raikes JA, Hartley AE, Cross AE (1996). On the spatial pattern of soil nutrients in desert ecosystems. Ecology 77: 364-374.
59. Schuelke M (2000). An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18: 233-234.
60. Siol M, Bonnin I, Olivieri I, Prosperi JM, Ronfort J (2007). Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the selfing annual Medicago truncatula. J Evol Biol 20: 2349-2360.
61. Siol M, Prosperi J, Bonnin I, Ronfort J (2008). How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula. Heredity 100: 517-525.
62. StatSoft Inc (2004). STATISTICA (data analysis software system), version 7, www.statsoft.com.
63. Tallmon DA, Luikart G, Waples RS (2004). The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol 19: 489-496.
64. Verhoeven KJF, Vanhala TK, Biere A, Nevo E, Van Damme JMM (2004). The genetic basis of adaptive population differentiation: a quantitative trait locus analysis of fitness traits in two wild barley populations from contrasting habitats. Evolution 58: 270-283.
65. Volis S, Mendlinger S, Ward D (2002). Differentiation in populations of Hordeum spontaneum along a gradient of environmental productivity and predictability: life history and local adaptation. Biol J Linnean Soc 77: 479-490.
66. Volis S, Olsvig-Whittaker L, Anikster Y, Mendlinger S (2004a). The influence of space in genetic-environmental relationships when environmental heterogeneity and seed dispersal occurs at similar scale. Am Natural 163: 312-327.
67. Volis S, Verhoeven K, Mendlinger S, Ward D (2004b). Phenotypic selection and regulation of reproduction in different environments in wild barley. J Evol Biol 17: 1121-1131.
68. Volis S, Zaretsky M, Shulgina I (2010). Fine-scale spatial genetic structure in a predominantly selfing plant: role of seed and pollen dispersal. Heredity 105: 384-393.
69. Wagner DB, Allard RW (1991). Pollen migration in predominantly self-fertilizing plants: barley. J Hered 82: 302-304.
70. Whitlock MC, Phillips PC, Moore FBG, Tonsor SJ (1995). Multiple fitness peaks and epistasis. Ann Rev Ecol Syst 26: 601-629.
71. Williams CF (1994). Genetic consequences of seed dispersal in three sympatric forest herbs. II. Microspatial genetic structure within populations. Evolution 48: 1959-1972.
72. Wolf JD, Brodie ED, Wade MJ (eds) (2000). Epistasis and the Evolutionary Process. Oxford University Press: Oxford.
73. Wright S (1931). Evolution in Mendelian populations. Genetics 16: 97-159.
74. Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, Grimm DR et al. (2003). Single-nucleotide polymorphisms in soybean. Genetics 163: 1123-1134.
75. Zohary D (1964). Barley genetics I. Proceedings of 1st International Barley Genetics Symposium, Wageningen 1963. Pudoc: Wageningen, The Netherlands, 27-31.
76. Zohary D (1971). The fate of natural "hybrid swarms" between Hordeum spontaneum and H. vulgare. In: Barley Genetics II. Proceedings of 2nd International Barley Genetics Symposium. pp 63-64.